genome.fa.s11.2.7.7.80.10.50.1000.126.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032255.1 Gossypioides kirkii chromosome KI_13
Parameters: 2 7 7 80 10 50 1000
Length:  42971368

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   

This is table  126  of  143  ( 17057 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36984856--36985767	473	1.9	480	90	3	1448	41	12	13	32	1.82
36986688--36986736	24	2.1	24	92	3	82	16	8	12	63	1.51
36987817--36987888	30	2.4	29	82	11	83	44	4	4	47	1.41
36987847--36987887	22	1.9	21	90	5	64	48	2	2	46	1.28
36994224--36994266	18	2.3	19	84	11	54	20	4	2	72	1.14
36997684--36997733	6	8.3	6	90	0	82	2	62	0	36	1.07
36997793--36997875	41	2.0	41	97	0	157	20	25	9	44	1.82
37007656--37008048	196	2.0	196	97	0	750	20	20	21	37	1.95
37016867--37016894	7	4.0	7	100	0	56	42	0	42	14	1.45
37017451--37017505	14	3.9	14	79	15	51	40	0	0	60	0.97
37017685--37017730	18	2.6	18	92	0	74	30	8	17	43	1.79
37018386--37018432	17	2.5	20	80	13	55	36	2	6	55	1.37
37022415--37022444	15	2.0	15	93	0	51	23	13	16	46	1.82
37030482--37030510	14	2.1	14	100	0	58	37	6	41	13	1.72
37042056--37042089	17	1.9	18	88	5	52	32	17	2	47	1.63
37050619--37050784	30	5.7	29	73	18	146	31	1	33	34	1.66
37050616--37050792	58	3.0	58	94	1	300	31	1	32	34	1.68
37050647--37050823	30	6.1	28	73	17	128	32	1	29	35	1.68
37050619--37050815	58	3.4	58	92	2	297	31	1	31	34	1.67
37051259--37051295	19	1.9	19	88	0	56	10	10	0	78	0.97
37051876--37051971	3	31.0	3	71	6	57	35	3	4	57	1.34
37053291--37053418	62	2.0	63	90	1	204	29	10	21	38	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37067111--37067445	30	11.4	29	67	15	136	36	24	3	35	1.74
37067225--37067561	58	5.8	56	79	10	297	35	27	2	34	1.71
37067226--37067591	59	6.3	56	77	9	317	35	27	2	34	1.71
37067294--37067561	29	9.2	28	70	19	142	34	27	2	35	1.70
37067220--37067561	30	11.8	28	68	16	114	35	27	2	33	1.71
37067209--37067591	175	2.2	174	85	4	495	35	27	2	34	1.72
37067297--37067591	30	10.1	29	70	13	133	34	26	2	36	1.70
37067294--37067591	29	10.2	29	70	17	131	34	27	2	35	1.70
37079595--37080034	200	2.2	201	88	2	643	36	20	22	20	1.95
37080400--37080459	17	3.5	17	79	0	66	40	3	5	51	1.40
37081216--37081248	16	2.1	16	94	0	57	48	3	0	48	1.17
37082386--37082555	30	5.8	29	74	8	128	40	24	2	32	1.70
37082501--37082691	57	3.3	56	79	5	197	34	26	1	37	1.66
37082445--37082654	57	3.6	58	78	6	194	38	24	1	35	1.65
37088156--37088232	30	2.6	30	91	0	118	53	7	10	28	1.63
37093561--37095008	405	3.6	399	82	4	1610	32	17	24	25	1.97
37107477--37107546	32	2.2	32	92	0	113	38	11	12	37	1.80
37109702--37109746	22	2.0	22	86	0	63	42	2	2	53	1.25
37115580--37115636	29	2.0	29	82	0	69	43	12	14	29	1.81
37116705--37116747	22	2.0	22	81	9	52	34	2	2	60	1.22
37126391--37126442	26	2.1	24	83	16	63	28	0	7	63	1.22
37127634--37127667	16	2.1	17	94	5	61	64	0	5	29	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37131176--37131209	9	3.7	9	88	7	50	85	2	0	11	0.71
37131779--37131838	17	3.6	16	74	12	50	28	3	1	66	1.17
37138917--37138978	28	2.3	27	80	2	70	54	0	0	45	0.99
37139111--37139181	37	1.9	37	100	0	142	36	5	7	50	1.53
37140696--37140741	23	2.0	23	100	0	92	30	13	17	39	1.87
37142554--37142640	31	2.7	32	82	3	104	35	16	17	31	1.92
37142896--37142969	26	2.8	25	70	14	60	66	0	1	32	1.00
37142874--37143105	9	24.7	9	65	17	71	58	3	2	35	1.27
37142872--37142994	19	6.8	17	67	19	52	63	2	2	31	1.20
37143057--37143095	20	2.0	20	85	10	53	61	7	0	30	1.24
37144079--37144121	22	2.0	22	86	9	61	20	2	11	65	1.36
37148049--37148090	22	2.0	22	85	4	59	40	16	2	40	1.62
37151546--37151583	12	3.2	12	85	3	51	13	13	10	63	1.53
37155537--37155631	23	4.0	23	72	18	70	16	1	10	71	1.19
37155536--37155604	17	4.2	16	81	7	59	15	0	11	72	1.12
37155645--37155678	17	1.9	18	88	5	52	14	5	11	67	1.39
37163652--37163685	16	2.3	14	90	10	50	0	5	11	82	0.83
37163654--37163701	12	3.8	12	75	20	53	2	6	10	81	0.95
37164722--37164991	30	9.2	30	79	7	252	38	1	21	39	1.61
37164722--37164991	59	4.6	57	79	8	247	38	1	21	39	1.61
37175816--37175868	14	3.6	15	78	17	58	71	0	3	24	1.02
37175859--37175908	24	2.0	25	81	11	59	50	2	2	46	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37178438--37178478	3	13.7	3	100	0	82	65	0	0	34	0.93
37182315--37182348	18	1.9	18	88	5	52	29	0	5	64	1.17
37184616--37184669	6	8.5	6	76	11	54	44	20	1	33	1.62
37188488--37188543	28	2.0	28	100	0	112	28	25	25	21	1.99
37188976--37189005	3	10.0	3	100	0	60	66	33	0	0	0.92
37191151--37191528	191	2.0	191	95	1	686	38	24	9	27	1.86
37201823--37201872	15	3.5	15	79	17	61	56	0	0	44	0.99
37202977--37203327	59	6.0	59	89	2	526	33	29	1	35	1.69
37202977--37203327	176	2.0	177	88	3	530	33	29	1	35	1.69
37210400--37210438	10	3.8	10	86	6	51	46	0	2	51	1.14
37210399--37210438	21	1.9	21	89	0	62	47	0	2	50	1.14
37210399--37210433	11	3.3	11	88	8	54	51	0	0	48	1.00
37220989--37221083	43	2.2	43	100	0	190	22	22	25	30	1.99
37223320--37223354	17	1.9	19	88	11	56	74	2	0	22	0.95
37223317--37223374	26	2.4	25	83	13	68	70	5	0	24	1.07
37223394--37223426	2	16.5	2	100	0	66	51	0	0	48	1.00
37247365--37247400	18	2.1	18	90	10	58	30	0	5	63	1.17
37247744--37247856	41	2.8	41	79	1	129	23	19	11	45	1.83
37252383--37252431	20	2.7	18	76	14	55	48	0	0	51	1.00
37252673--37252729	25	2.2	25	84	12	71	63	0	3	33	1.12
37252681--37252744	25	2.5	24	73	12	56	59	1	7	31	1.35
37272514--37272713	86	2.3	84	81	9	228	39	15	9	35	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37272782--37272838	30	1.9	30	89	3	89	61	1	0	36	1.07
37273137--37273245	41	2.8	40	81	10	111	39	2	0	56	1.20
37273213--37273283	9	7.9	9	75	10	56	30	0	0	69	0.89
37273149--37273260	19	5.8	20	67	20	58	40	2	0	56	1.20
37273858--37273896	20	2.0	20	85	5	53	48	12	17	20	1.80
37280978--37281038	31	2.0	31	90	6	97	31	24	9	34	1.88
37284367--37284416	19	2.6	20	81	6	59	30	2	0	68	1.01
37284345--37284422	19	4.2	19	71	14	56	35	2	1	60	1.19
37284492--37284537	17	2.7	17	90	6	67	73	2	0	23	0.94
37291569--37291613	22	2.0	23	86	4	65	28	13	8	48	1.72
37293211--37293243	17	1.9	17	93	0	57	69	0	24	6	1.10
37293211--37293270	20	3.2	19	80	15	54	66	1	23	8	1.28
37294111--37294146	17	2.1	18	89	5	56	44	2	2	50	1.31
37300406--37300569	57	2.8	57	91	5	247	26	21	35	15	1.93
37305748--37305790	10	4.5	10	80	19	56	72	2	0	25	0.97
37305737--37305781	18	2.6	18	92	3	74	66	0	0	33	0.92
37309681--37309721	17	2.3	18	80	12	50	29	0	7	63	1.21
37314285--37314323	17	2.3	18	86	8	55	25	0	2	71	0.98
37315314--37315352	17	2.3	17	86	0	51	48	0	2	48	1.15
37317353--37317400	20	2.6	19	87	9	64	54	0	0	45	0.99
37322307--37322375	33	2.1	33	97	0	129	31	5	10	52	1.59
37335257--37335292	15	2.4	15	95	0	63	63	5	8	22	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37335377--37335437	29	2.1	29	87	3	88	26	13	32	27	1.93
37335419--37335644	30	7.7	29	66	24	100	34	3	29	31	1.76
37335416--37335732	59	5.4	60	90	3	484	35	3	29	31	1.75
37335573--37335732	29	5.5	28	68	24	98	37	1	27	33	1.68
37337615--37337692	6	13.7	6	69	15	58	50	2	1	46	1.23
37337617--37337692	17	4.5	17	76	5	82	51	2	1	44	1.23
37343613--37343661	18	2.9	18	82	11	59	51	0	0	48	1.00
37344086--37344110	2	12.5	2	100	0	50	0	48	0	52	1.00
37345775--37345863	24	3.5	24	73	19	72	42	3	2	51	1.30
37345795--37345915	6	21.0	6	69	14	67	44	2	2	50	1.28

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143