genome.fa.s11.2.7.7.80.10.50.1000.15.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032255.1 Gossypioides kirkii chromosome KI_13
Parameters: 2 7 7 80 10 50 1000
Length:  42971368

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   

This is table  15  of  143  ( 17057 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4627615--4627663	22	2.2	23	85	10	66	8	14	18	59	1.59
4632252--4632286	16	2.2	16	89	0	52	57	20	2	20	1.54
4645450--4645510	16	3.8	16	76	8	61	31	19	3	45	1.66
4646054--4646087	17	2.0	17	88	0	50	17	5	0	76	0.98
4651789--4652226	220	2.0	220	95	0	786	34	20	17	28	1.95
4654519--4654612	29	3.2	28	74	16	84	59	2	5	32	1.32
4655499--4655536	19	2.0	20	84	5	51	57	2	5	34	1.35
4661845--4661884	15	2.9	13	82	13	53	37	0	0	62	0.95
4665358--4665409	20	2.8	18	75	11	52	34	3	0	61	1.14
4665617--4665659	14	2.9	15	75	6	52	34	2	0	62	1.08
4668237--4668300	18	3.6	18	76	0	56	34	21	23	20	1.97
4668525--4668569	14	2.9	16	69	24	51	42	0	0	57	0.98
4668530--4668575	24	2.0	23	86	4	65	43	0	2	54	1.12
4682860--4682918	24	2.6	23	83	5	75	44	0	0	55	0.99
4683400--4683438	9	4.2	9	86	3	51	28	2	0	69	1.02
4689948--4690004	28	2.0	28	100	0	114	26	28	17	28	1.98
4690270--4690334	28	2.2	29	86	10	89	32	7	6	53	1.54
4693199--4693253	24	2.3	24	90	0	92	30	21	20	27	1.98
4698246--4698297	12	4.1	13	78	9	54	57	3	0	38	1.17
4698251--4698303	19	2.8	19	80	11	63	54	3	0	41	1.18
4699894--4699978	11	7.6	11	76	9	57	69	5	1	23	1.17
4699905--4699978	3	25.3	3	80	10	73	68	4	1	25	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4699891--4699976	9	9.2	9	75	16	50	69	6	1	22	1.19
4722036--4722107	35	2.1	35	100	0	144	36	22	18	23	1.95
4731250--4731289	21	1.9	21	89	0	62	25	60	10	5	1.49
4735249--4736295	418	2.5	421	80	7	1192	34	21	15	28	1.94
4739740--4739847	22	4.9	22	73	8	85	17	25	16	40	1.90
4739738--4739847	44	2.5	44	77	5	132	17	24	17	40	1.90
4741883--4741923	17	2.4	18	84	15	61	17	46	19	17	1.85
4750800--4750881	29	2.8	30	77	1	85	26	15	18	39	1.91
4753432--4753691	97	2.7	97	88	0	367	35	17	14	32	1.90
4756096--4756211	59	2.0	59	86	3	162	39	21	10	28	1.86
4760420--4760460	21	2.0	21	95	0	73	48	12	7	31	1.68
4769415--4769463	24	2.0	24	100	0	98	22	16	16	44	1.86
4782138--4782493	178	2.0	178	99	0	703	43	5	20	30	1.74
4782731--4782872	23	6.1	23	76	9	126	13	23	21	41	1.88
4782747--4782872	48	2.7	48	78	7	132	11	23	21	42	1.86
4784242--4784383	16	7.9	17	71	14	54	64	2	0	33	1.11
4784279--4784361	19	4.4	19	71	18	66	57	2	1	38	1.19
4784282--4784371	37	2.3	38	82	16	98	60	3	1	35	1.21
4784260--4784362	19	5.2	20	72	18	65	60	1	0	36	1.15
4784320--4784371	20	2.6	20	77	19	63	63	3	1	30	1.23
4784320--4784383	21	3.1	21	78	14	71	65	3	1	29	1.17
4784310--4784382	19	3.7	19	70	20	51	64	4	1	30	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4784567--4784625	19	3.2	19	76	9	68	27	3	3	66	1.24
4784600--4784663	29	2.1	28	86	11	83	29	4	1	64	1.23
4784567--4784640	37	2.0	37	82	10	89	28	2	2	66	1.19
4784659--4784711	27	2.0	27	85	7	72	32	3	0	64	1.12
4784695--4784745	10	5.1	10	74	9	50	47	0	0	52	1.00
4784668--4784758	30	3.3	27	76	8	76	37	1	0	61	1.03
4786010--4786052	2	21.5	2	100	0	86	51	0	0	48	1.00
4787413--4787489	35	2.3	35	88	4	113	40	12	5	41	1.66
4787421--4787490	35	2.0	35	94	0	122	38	12	5	42	1.67
4791994--4792040	21	2.2	22	88	3	69	42	0	10	46	1.38
4798272--4798300	12	2.5	12	94	5	51	48	10	3	37	1.54
4800949--4800990	17	2.7	15	77	22	50	38	0	0	61	0.96
4800917--4801086	84	2.0	82	80	9	184	49	1	1	47	1.19
4803624--4803661	20	1.9	20	88	0	58	39	5	0	55	1.23
4805647--4805692	19	2.4	19	88	0	65	39	26	4	30	1.75
4809225--4809264	21	1.9	21	84	0	53	27	35	7	30	1.84
4810226--4810271	19	2.4	19	88	0	65	39	26	4	30	1.75
4810298--4810327	16	1.9	15	93	6	51	53	10	20	16	1.71
4810802--4811060	127	2.0	127	99	0	509	36	27	7	27	1.84
4811094--4811123	16	1.9	15	93	6	51	46	0	20	33	1.51
4815598--4815669	33	2.2	31	82	7	81	33	6	1	58	1.33
4818605--4818790	84	2.2	84	85	0	246	22	39	15	22	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4823845--4823875	13	2.4	13	94	0	53	22	3	12	61	1.46
4824142--4824183	19	2.3	18	84	8	50	61	2	0	35	1.09
4832211--4832247	16	2.3	15	86	13	56	78	2	5	13	1.03
4833044--4833111	27	2.5	28	71	23	72	55	5	4	33	1.44
4851149--4851213	21	3.2	19	77	18	60	38	3	1	56	1.24
4851171--4851220	20	2.5	20	83	3	57	36	8	2	54	1.42
4855406--4855450	17	2.6	18	82	3	56	60	2	0	37	1.09
4855422--4855485	18	3.2	20	78	10	60	53	1	0	45	1.10
4855405--4855473	18	3.9	17	79	7	66	57	1	0	40	1.07
4855400--4855477	19	4.3	18	71	16	54	55	1	0	43	1.08
4855447--4855494	21	2.3	21	85	7	62	58	2	0	39	1.10
4856962--4857343	29	13.1	28	65	18	122	35	3	29	31	1.73
4856962--4857362	58	6.9	58	82	6	411	35	3	29	31	1.74
4856962--4857354	116	3.4	115	83	5	461	35	3	29	31	1.73
4857072--4857354	29	9.7	27	68	15	129	36	4	29	30	1.77
4858920--4859038	38	3.1	38	68	18	102	26	17	28	26	1.98
4858920--4859076	77	2.0	77	83	2	199	26	20	28	25	1.99
4865907--4866055	29	5.1	29	67	23	73	35	2	28	33	1.71
4865839--4866088	117	2.1	117	84	6	321	36	2	29	32	1.70
4865934--4866086	29	5.2	28	68	20	91	35	3	28	32	1.74
4865836--4866115	58	4.8	58	78	7	282	35	2	28	33	1.71
4867943--4867982	17	2.4	17	87	4	64	57	2	2	37	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4867947--4867998	27	1.9	27	84	7	70	57	7	1	32	1.38
4869082--4869114	16	2.1	16	100	0	66	51	0	0	48	1.00
4869885--4869924	16	2.4	16	83	8	53	30	12	5	52	1.60
4871335--4871724	57	6.8	58	70	4	238	36	16	11	35	1.85
4871361--4871739	114	3.3	114	87	0	515	36	17	11	35	1.86
4873446--4874426	329	3.0	329	90	0	1532	39	13	12	33	1.83
4884647--4884694	17	2.6	19	78	18	57	37	4	0	58	1.18
4891678--4891923	129	1.9	125	87	4	359	31	18	23	26	1.97
4893438--4893471	16	2.2	15	89	5	50	32	0	5	61	1.20
4893558--4893919	62	6.0	62	80	7	352	28	16	15	38	1.90
4894723--4894828	30	3.5	29	82	6	97	66	2	5	24	1.26
4894746--4894828	30	2.8	30	85	3	105	63	2	7	26	1.32
4896481--4897291	84	9.6	84	88	3	1159	47	4	5	42	1.46
4896481--4897291	167	4.8	168	91	2	1211	47	4	5	42	1.46
4897395--4897429	17	2.1	16	89	5	52	48	8	0	42	1.33
4897388--4897450	28	2.3	27	83	2	72	41	11	0	47	1.39
4901110--4901564	62	7.5	61	81	7	398	38	16	17	27	1.90
4901158--4901597	124	3.6	123	80	9	451	37	15	18	27	1.91
4902112--4902177	34	1.9	34	81	9	80	62	1	1	34	1.14
4903719--4903752	17	2.0	17	88	0	50	23	0	0	76	0.79
4904086--4904149	31	2.2	31	86	8	89	42	3	0	54	1.16
4904341--4904383	21	2.0	22	82	13	54	55	0	6	37	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4904594--4904904	140	2.2	141	88	3	457	31	18	21	27	1.97
4907869--4907921	26	2.1	26	82	10	65	35	0	0	64	0.94
4907893--4907932	14	2.9	14	78	14	55	32	0	0	67	0.91
4912623--4912708	32	2.8	30	80	13	86	33	9	4	52	1.54
4912749--4912815	32	2.1	31	83	2	80	41	13	4	40	1.64
4914171--4914202	2	16.0	2	100	0	64	50	0	0	50	1.00
4917753--4917784	3	10.7	3	93	0	55	37	0	28	34	1.57
4920950--4921314	182	2.0	182	98	0	712	27	17	17	37	1.92
4923258--4923296	19	2.1	19	85	0	51	69	2	5	23	1.21
4923815--4923839	13	1.9	13	100	0	50	72	0	0	28	0.86

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143