genome.fa.s11.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032255.1 Gossypioides kirkii chromosome KI_13
Parameters: 2 7 7 80 10 50 1000
Length:  42971368

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   

This is table  2  of  143  ( 17057 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
475262--475296	14	2.5	15	86	13	56	77	5	17	0	0.96
475420--475461	12	3.5	12	93	0	75	42	0	9	47	1.36
478383--478436	24	2.3	24	83	3	65	44	16	16	22	1.86
478682--478804	41	3.0	41	100	0	246	63	9	12	14	1.52
492155--492212	24	2.5	22	77	5	62	41	17	12	29	1.85
495851--495910	30	2.0	30	100	0	120	6	16	26	50	1.70
498205--498284	25	3.2	24	76	15	74	53	5	1	40	1.31
498425--498495	29	2.3	30	76	11	74	32	4	9	53	1.53
498629--498665	19	1.9	19	88	0	56	59	2	0	37	1.12
503867--503910	23	2.0	24	82	13	58	31	13	0	54	1.39
504880--504932	21	2.5	22	81	3	63	33	0	5	60	1.20
505848--505920	31	2.4	30	80	13	78	60	0	0	39	0.97
511806--512295	244	2.0	244	100	0	980	28	17	16	37	1.91
512961--513039	38	2.1	38	85	4	106	53	1	5	40	1.31
512981--513049	21	3.5	21	67	18	58	55	1	2	40	1.24
513206--513256	27	2.0	27	84	7	70	37	0	7	54	1.29
517457--517491	1	35.0	1	88	0	52	0	2	2	94	0.37
521261--521287	1	27.0	1	100	0	54	0	0	100	0	0.00
530202--530259	30	2.0	29	83	10	73	37	0	6	55	1.27
531046--531106	22	2.8	22	85	7	72	14	13	1	70	1.24
538405--538443	19	2.0	21	85	10	55	35	2	20	41	1.66
538657--538688	17	1.9	16	93	6	55	59	0	0	40	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
538656--538688	8	4.1	8	88	11	50	60	0	0	39	0.97
545731--545762	15	2.1	15	94	0	55	34	28	15	21	1.94
547306--547334	6	4.8	6	100	0	58	17	65	0	17	1.27
550675--550721	21	2.2	20	82	10	58	36	0	0	63	0.94
550657--550715	29	2.0	29	87	6	84	38	0	1	59	1.08
550745--550795	27	1.9	27	88	4	77	45	3	1	49	1.32
552140--552179	15	2.5	16	84	12	55	42	30	5	22	1.75
556741--556918	82	2.1	88	84	8	233	36	35	5	22	1.76
560221--560259	17	2.3	17	86	0	51	15	10	25	48	1.76
560249--560344	41	2.3	41	92	0	156	31	5	27	36	1.79
563904--563937	2	17.0	2	100	0	68	50	0	0	50	1.00
564652--564719	31	2.2	31	84	10	86	50	14	2	32	1.58
589074--589239	58	2.8	59	82	7	210	25	17	10	45	1.81
589463--589554	32	2.9	32	82	7	91	51	8	14	26	1.71
593376--594237	140	6.0	142	83	8	1009	43	15	15	25	1.86
593377--594227	281	3.0	282	85	6	1094	43	15	15	25	1.86
593891--594185	152	1.9	153	88	4	452	43	15	15	25	1.86
594825--594868	22	2.0	22	81	4	52	54	4	9	31	1.52
595274--595353	32	2.5	32	79	2	88	27	18	10	43	1.82
595215--595353	61	2.3	59	80	9	145	25	16	10	46	1.79
595558--595691	60	2.2	62	81	2	155	44	13	18	23	1.85
596365--596438	20	3.7	20	65	13	53	60	6	2	29	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
597277--597306	14	2.2	14	94	5	53	40	10	0	50	1.36
597708--597752	17	2.6	17	78	0	54	60	11	2	26	1.42
602403--602446	16	2.9	14	86	10	52	70	2	2	25	1.10
602401--602448	15	3.1	16	81	3	55	72	2	2	22	1.05
603584--603629	20	2.3	20	88	3	67	60	4	0	34	1.16
605642--605673	16	2.0	16	100	0	64	25	31	6	37	1.81
605644--605679	16	2.2	16	90	0	54	33	30	5	30	1.81
613023--613061	17	2.3	17	86	8	53	56	0	2	41	1.13
613020--613065	20	2.4	19	82	13	58	54	0	4	41	1.20
615663--615712	24	2.0	25	84	3	66	50	16	2	32	1.56
627536--627576	18	2.2	20	86	8	59	48	12	7	31	1.68
628871--628913	18	2.2	20	88	8	63	53	0	0	46	1.00
632569--632845	138	2.0	138	99	0	545	35	14	13	35	1.86
634331--634381	16	3.1	15	78	18	50	43	1	5	49	1.38
641701--641745	17	2.6	17	100	0	90	33	24	11	31	1.90
652390--652455	32	2.1	31	82	2	78	30	10	15	43	1.80
653831--653962	51	2.6	51	80	7	160	40	3	17	38	1.68
659458--659891	30	14.4	30	91	2	676	34	3	25	36	1.74
661860--661959	6	16.8	6	76	13	91	51	1	1	47	1.14
661886--661964	17	4.9	16	81	10	90	56	2	1	39	1.21
661885--661964	31	2.5	32	85	4	108	56	2	1	40	1.21
661886--661982	31	3.4	28	85	7	97	54	4	1	40	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
661923--661987	27	2.4	27	84	5	69	56	4	1	36	1.29
666112--666167	26	2.2	25	81	6	76	25	7	12	55	1.62
666127--666185	28	2.2	26	81	6	64	33	8	8	49	1.64
667987--668156	83	2.0	83	100	0	340	34	10	18	36	1.85
669557--669623	29	2.3	29	94	0	116	23	13	14	47	1.80
671630--671716	29	3.0	30	72	8	81	33	9	9	48	1.67
671622--671706	29	2.8	30	75	8	84	36	9	8	45	1.66
681105--681146	21	2.0	21	100	0	84	38	9	23	28	1.86
682160--682195	16	2.1	17	90	10	56	50	0	5	44	1.25
682160--682210	18	2.9	18	86	11	63	49	0	3	47	1.20
683129--683370	97	2.5	98	96	0	441	30	11	11	47	1.75
687595--687666	36	2.0	36	91	0	117	19	16	20	43	1.89
687869--687943	31	2.4	31	84	8	91	30	5	14	49	1.66
688992--689029	15	2.4	17	86	8	53	78	2	0	18	0.86
696025--696086	27	2.3	28	83	5	83	50	14	9	25	1.73
697474--697517	20	2.2	20	87	0	61	63	0	0	36	0.95
700085--700125	21	2.0	21	85	0	55	9	9	17	63	1.51
702788--702830	22	2.0	21	86	9	59	23	9	6	60	1.51
710578--710646	34	2.0	34	100	0	138	44	8	20	26	1.80
714347--714391	18	2.5	17	79	10	54	64	2	0	33	1.06
718299--718323	4	6.2	4	100	0	50	76	0	0	24	0.80
722149--722179	16	1.9	16	93	0	53	74	3	0	22	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
726238--726263	2	13.0	2	100	0	52	50	0	0	50	1.00
727679--727742	3	21.7	3	90	3	103	62	3	0	34	1.11
729578--729644	31	2.2	31	83	5	91	46	11	8	32	1.72
730255--730291	19	1.9	19	89	10	58	51	2	0	45	1.15
730295--730336	21	2.0	21	86	9	59	54	0	2	42	1.13
730408--730434	14	1.9	14	100	0	54	37	0	0	62	0.95
733303--733404	51	2.0	51	94	0	177	30	30	5	33	1.81
739270--739336	29	2.2	30	82	10	75	49	2	4	43	1.38
742300--742406	31	3.5	30	75	12	94	37	10	12	40	1.77
745090--745158	31	2.2	31	87	5	95	30	18	24	26	1.98
763105--763175	24	3.0	23	78	15	74	38	0	4	57	1.18
763170--763196	6	4.5	6	100	0	54	51	0	0	48	1.00
768419--768539	59	2.1	55	80	7	136	49	15	13	21	1.78
768920--769020	31	3.4	30	70	18	86	51	15	7	24	1.70
771766--771790	5	5.0	5	100	0	50	20	0	40	40	1.52
778024--778077	23	2.4	23	81	3	56	35	3	7	53	1.47
778531--778565	18	1.9	18	88	0	52	71	2	2	22	1.13
779366--779429	27	2.4	28	74	12	71	37	0	1	60	1.06
791314--791357	22	2.0	22	81	0	52	59	0	6	34	1.24
791590--791665	33	2.4	33	85	10	104	43	1	15	39	1.55
793970--794029	31	1.9	31	90	6	95	40	5	10	45	1.60
795588--795644	27	2.1	28	80	9	64	33	0	8	57	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
797335--797364	3	10.0	3	100	0	60	0	33	0	66	0.92
800360--800454	42	2.3	42	94	0	172	32	18	22	26	1.97
803882--803951	28	2.5	27	84	9	86	60	1	1	37	1.15
804593--804658	29	2.3	31	82	10	77	36	3	3	57	1.29
813856--813897	22	1.9	22	90	0	66	47	7	2	42	1.43
816265--816326	17	3.5	17	81	16	65	30	0	1	67	1.00
816262--816315	19	2.8	19	78	18	58	29	0	1	68	1.00
816933--816958	2	13.0	2	100	0	52	50	0	0	50	1.00
822800--822836	2	18.5	2	94	0	65	48	0	2	48	1.15
826428--826456	14	2.0	15	93	6	51	37	0	0	62	0.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143