genome.fa.s11.2.7.7.80.10.50.1000.79.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032255.1 Gossypioides kirkii chromosome KI_13
Parameters: 2 7 7 80 10 50 1000
Length:  42971368

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   

This is table  79  of  143  ( 17057 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25363411--25363459	24	2.0	24	84	7	64	51	8	22	18	1.72
25365461--25365543	26	3.2	26	76	6	71	28	27	18	25	1.98
25365527--25365563	19	1.9	19	88	0	56	24	27	18	29	1.98
25365554--25365604	18	2.7	18	84	6	57	29	23	23	23	1.99
25366874--25366907	16	2.0	18	88	11	54	23	8	5	61	1.47
25366873--25366913	18	2.3	19	80	20	52	24	9	4	60	1.47
25369260--25369284	7	3.6	7	100	0	50	44	0	0	56	0.99
25369268--25369323	17	3.3	17	87	5	78	37	1	1	58	1.19
25369268--25369352	35	2.5	33	86	7	116	35	1	4	58	1.26
25369277--25369354	17	4.6	17	79	7	88	34	1	5	58	1.28
25371026--25371344	29	11.0	29	77	11	235	37	23	2	36	1.67
25371024--25371380	30	12.2	29	75	12	270	36	24	2	36	1.69
25371024--25371380	59	6.1	59	78	11	324	36	24	2	36	1.69
25371069--25371327	115	2.2	116	82	8	321	37	23	2	36	1.68
25375945--25375993	15	3.4	14	83	13	64	73	0	0	26	0.83
25375967--25375995	5	5.8	5	100	0	58	79	0	0	20	0.74
25378475--25378519	20	2.1	22	84	8	58	31	2	0	66	1.04
25379002--25379044	19	2.2	19	84	12	52	39	2	0	58	1.11
25379013--25379065	20	2.7	20	85	11	74	43	0	1	54	1.11
25380449--25380682	30	7.9	30	75	8	158	41	5	19	33	1.75
25380782--25380845	33	2.0	32	84	9	85	64	7	12	15	1.49
25381107--25381164	22	2.6	22	83	0	71	15	50	17	17	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25381428--25381487	2	31.0	2	90	6	97	50	0	0	50	1.00
25381432--25381534	14	7.0	14	80	10	57	49	0	3	46	1.20
25381436--25381534	28	3.4	28	76	10	85	49	0	4	46	1.20
25388089--25388484	30	13.4	29	78	9	276	33	1	26	38	1.66
25388089--25388484	59	6.7	59	78	9	350	33	1	26	38	1.66
25388104--25388506	89	4.5	88	77	9	329	32	1	27	38	1.68
25388040--25388505	59	7.9	58	76	9	340	33	2	25	38	1.69
25390706--25390865	49	3.5	46	70	22	142	25	25	15	34	1.94
25390756--25390901	37	3.6	37	74	19	148	23	25	17	33	1.96
25390696--25390901	86	2.4	86	90	1	315	23	24	16	35	1.95
25390782--25391235	209	2.2	209	88	0	667	22	21	17	37	1.94
25391077--25391357	123	2.3	123	93	1	483	22	19	18	38	1.93
25403572--25403643	28	2.5	29	84	6	85	36	2	22	38	1.69
25403648--25403967	30	10.8	30	77	9	241	35	2	26	35	1.70
25403731--25403968	89	2.7	88	78	8	250	36	1	25	36	1.66
25409441--25409519	31	2.5	31	80	10	81	51	8	17	21	1.72
25409963--25410005	22	2.0	22	95	4	79	18	13	13	53	1.73
25411464--25411808	59	5.9	59	83	6	258	32	2	31	33	1.73
25411525--25411807	29	9.6	30	69	21	147	33	1	31	33	1.68
25411500--25411808	59	5.3	59	85	4	419	33	1	31	33	1.69
25413565--25413629	17	3.8	17	79	0	76	53	7	1	36	1.39
25416301--25416371	31	2.2	32	80	11	83	52	9	18	19	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25416310--25416384	31	2.4	31	82	8	80	50	9	17	22	1.74
25416524--25416555	16	2.0	16	100	0	64	12	31	6	50	1.65
25418417--25418464	22	2.2	22	92	0	78	29	35	6	29	1.82
25419432--25419503	17	4.3	17	72	10	58	54	6	11	27	1.61
25419406--25419490	32	2.6	32	87	7	127	49	7	9	34	1.62
25419467--25419505	16	2.4	17	82	4	53	51	10	10	28	1.68
25420555--25420595	20	2.0	20	95	0	73	34	7	19	39	1.80
25420825--25420874	24	2.1	24	88	0	73	54	18	4	24	1.61
25421234--25421266	17	2.0	17	94	5	59	60	30	3	6	1.36
25432113--25432137	8	3.1	8	100	0	50	52	0	12	36	1.39
25432462--25432526	23	2.8	23	79	9	62	27	15	26	30	1.96
25432492--25432536	23	2.0	23	86	0	63	26	11	31	31	1.91
25434375--25434420	24	1.9	23	86	8	65	56	4	4	34	1.39
25435475--25435509	13	2.7	13	87	12	54	11	14	0	74	1.08
25436382--25436431	11	4.5	11	74	18	50	78	4	2	16	1.00
25443041--25443086	24	1.9	23	86	8	65	54	6	4	34	1.46
25447752--25447797	17	2.7	17	79	0	56	23	34	21	19	1.96
25450046--25450101	28	2.0	28	100	0	112	32	7	10	50	1.64
25452838--25452865	12	2.3	12	100	0	56	42	0	7	50	1.30
25459631--25459742	26	4.3	26	90	0	170	25	25	16	32	1.97
25464470--25464494	9	2.8	9	100	0	50	44	0	0	56	0.99
25464457--25464499	22	2.0	22	81	9	52	39	2	2	55	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25474036--25474164	46	2.8	46	82	4	152	24	17	26	31	1.97
25475679--25475967	52	5.6	52	80	6	275	33	21	15	29	1.94
25475679--25475967	156	1.9	156	81	5	361	33	21	15	29	1.94
25476279--25476710	212	2.0	211	93	0	729	34	27	5	32	1.80
25478747--25478824	33	2.3	34	86	6	106	66	6	5	21	1.34
25479533--25480222	43	15.8	43	81	3	675	25	13	27	33	1.93
25479538--25480222	88	7.9	86	81	4	667	25	13	27	33	1.93
25481226--25481287	22	2.8	23	77	20	69	0	22	0	77	0.77
25481232--25481272	17	2.3	18	83	12	57	0	21	0	78	0.76
25483656--25483702	21	2.2	21	84	0	58	36	21	4	38	1.73
25490157--25490231	22	3.3	22	80	14	73	65	6	2	25	1.30
25490494--25490581	26	3.5	25	73	13	74	71	3	1	23	1.08
25491997--25492105	20	5.9	18	69	16	71	42	0	1	55	1.17
25496050--25496094	23	2.0	23	86	8	65	42	26	6	24	1.79
25497739--25497806	23	3.0	23	76	2	66	17	13	36	32	1.89
25497753--25497819	22	3.0	23	80	2	73	16	11	38	32	1.85
25502300--25502777	239	2.0	237	92	3	798	41	16	6	35	1.74
25503820--25504125	171	1.8	168	87	6	465	40	9	4	45	1.57
25504115--25504157	22	2.0	22	86	4	61	41	11	4	41	1.62
25505015--25505639	42	14.9	42	84	2	788	35	24	18	20	1.96
25506041--25506067	8	3.4	8	100	0	54	11	11	0	77	0.99
25514271--25514324	4	13.5	4	88	0	81	48	1	27	22	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25517616--25518082	236	2.0	236	90	2	740	42	14	6	36	1.72
25519117--25519486	152	2.4	153	84	9	481	42	11	5	40	1.62
25519117--25519518	153	2.6	152	81	10	460	42	11	4	41	1.63
25519955--25519979	11	2.3	11	100	0	50	84	0	8	8	0.79
25523043--25523087	23	2.0	23	90	0	72	11	15	44	28	1.81
25523081--25523126	18	2.4	20	76	20	53	15	6	34	43	1.72
25524494--25524611	56	2.1	56	83	1	146	33	13	10	43	1.78
25525850--25525965	29	4.0	29	84	3	126	37	18	17	26	1.92
25528193--25528230	2	19.0	2	100	0	76	50	0	0	50	1.00
25528838--25528880	16	2.8	15	82	3	50	62	11	2	23	1.40
25531181--25531429	58	4.3	59	81	7	251	33	3	25	36	1.74
25531169--25531429	29	9.0	29	78	10	214	32	4	26	36	1.76
25533038--25533094	25	2.3	25	84	0	69	19	10	49	21	1.78
25533306--25533371	5	12.4	5	74	17	53	54	3	0	42	1.15
25533308--25533389	11	7.4	11	71	15	53	57	2	0	40	1.12
25533299--25533387	6	16.0	6	72	15	66	53	2	1	42	1.20
25533282--25533369	11	8.0	11	73	15	67	53	2	1	43	1.20
25533283--25533387	17	6.3	16	81	6	104	53	1	0	43	1.18
25533780--25534228	206	2.2	201	86	3	632	20	22	20	35	1.96
25545683--25545872	95	2.0	94	82	11	228	36	13	20	30	1.90
25546099--25546205	28	3.8	28	68	17	67	36	3	24	35	1.73
25546267--25546469	30	6.9	29	79	8	169	34	3	22	38	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25546250--25546459	59	3.6	58	78	6	203	35	4	23	37	1.75
25546250--25546469	29	7.4	30	77	9	184	34	4	23	38	1.74
25547639--25547688	26	1.9	26	87	0	73	46	6	0	48	1.27
25548360--25548479	17	7.3	17	80	11	135	55	2	0	42	1.13
25548360--25548479	6	21.8	6	73	20	102	55	2	0	42	1.13
25548361--25548479	32	3.7	32	91	5	186	55	2	0	42	1.13
25549122--25549147	2	13.0	2	100	0	52	50	0	0	50	1.00
25550540--25550585	21	2.2	21	88	3	67	60	0	0	39	0.97
25550578--25550611	9	3.7	9	84	7	50	76	0	8	14	1.01
25550578--25550610	10	3.5	10	88	12	52	75	0	9	15	1.03

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143