genome.fa.s11.2.7.7.80.10.50.1000.35.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032255.1 Gossypioides kirkii chromosome KI_13
Parameters: 2 7 7 80 10 50 1000
Length:  42971368

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   

This is table  35  of  143  ( 17057 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10499278--10499560	43	6.6	43	79	4	284	33	16	24	26	1.96
10499310--10499547	128	1.9	129	81	4	293	32	15	24	27	1.96
10499814--10500124	35	8.9	35	81	0	318	27	4	33	35	1.76
10502107--10502164	29	1.9	30	83	13	75	34	3	8	53	1.49
10524580--10524621	17	2.4	17	88	4	57	21	28	2	47	1.63
10524560--10524607	24	2.0	24	83	0	60	18	35	2	43	1.62
10530604--10530688	5	17.6	5	79	18	60	22	1	1	75	0.94
10530622--10530699	4	19.2	4	73	19	56	24	1	1	73	0.99
10530631--10530686	23	2.5	24	82	11	73	26	0	0	73	0.84
10530604--10530703	10	9.1	11	68	25	61	22	1	2	75	0.97
10530605--10530703	53	1.9	51	82	11	123	22	1	2	74	0.98
10537582--10538069	100	4.9	100	74	8	382	36	16	18	28	1.93
10537582--10538031	201	2.2	201	81	2	492	35	16	19	28	1.94
10538604--10538645	16	2.6	16	82	17	52	78	14	0	7	0.95
10539985--10540076	4	22.8	4	69	22	59	20	2	3	73	1.07
10539991--10540077	13	7.3	12	73	21	67	20	2	3	73	1.09
10540003--10540076	35	2.1	35	85	7	98	21	2	2	72	1.09
10539985--10540109	15	8.6	14	67	20	53	19	4	4	72	1.16
10541401--10541459	24	2.3	26	83	11	70	57	1	3	37	1.25
10544441--10544640	42	4.7	42	85	2	258	26	16	28	28	1.97
10544441--10544640	83	2.3	86	87	5	300	26	16	28	28	1.97
10544658--10545002	42	8.1	42	88	1	476	20	15	31	33	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10544595--10544724	63	2.1	63	84	5	165	17	18	29	34	1.94
10544512--10544792	147	1.9	146	84	2	375	20	16	30	32	1.95
10545527--10545565	21	1.9	21	94	5	71	25	15	15	43	1.86
10554829--10554886	17	3.4	17	79	13	64	13	22	12	51	1.74
10557567--10557619	17	2.8	20	72	16	58	47	15	16	20	1.83
10557918--10557950	11	3.2	11	91	8	52	0	21	0	78	0.75
10580447--10580523	17	4.5	17	77	8	75	19	22	12	45	1.84
10584319--10584358	20	2.0	20	90	0	62	25	10	12	52	1.70
10585042--10585732	50	13.8	50	68	10	234	35	18	18	26	1.94
10585042--10585530	201	2.4	202	83	4	578	34	18	19	26	1.95
10585042--10585519	101	4.8	100	80	4	523	34	19	19	27	1.96
10586053--10586089	17	2.2	17	90	4	58	81	16	0	2	0.81
10587257--10587355	29	3.4	28	68	13	74	21	11	6	61	1.50
10587364--10587439	30	2.4	29	77	16	71	21	3	3	71	1.19
10588527--10588582	23	2.4	24	79	8	62	75	3	3	17	1.10
10590804--10590847	22	2.0	23	90	4	72	47	0	0	52	1.00
10590807--10590881	31	2.4	31	93	4	125	52	0	0	48	1.00
10591987--10592016	15	1.9	16	93	6	53	46	10	6	36	1.64
10596334--10596373	19	2.0	20	85	4	55	62	12	5	20	1.48
10601476--10601513	16	2.4	17	86	8	53	15	2	0	81	0.80
10610411--10610454	15	2.8	16	87	12	65	2	25	0	72	0.96
10611499--10611541	3	14.7	3	90	4	70	0	30	0	69	0.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10624732--10624811	35	2.3	35	80	6	90	66	6	2	25	1.28
10624770--10624841	27	2.6	27	88	2	99	65	8	2	23	1.34
10624712--10624834	62	2.0	61	84	4	158	63	6	5	24	1.40
10624765--10624861	27	3.6	27	82	9	94	64	9	2	23	1.33
10626413--10626600	49	3.8	49	80	2	144	20	26	16	36	1.94
10626485--10626597	49	2.3	49	86	3	147	20	27	14	38	1.91
10626583--10626616	15	2.3	15	100	0	68	17	38	0	44	1.49
10626602--10626910	49	6.3	49	75	3	228	19	23	16	40	1.91
10626602--10626910	98	3.2	98	80	3	354	19	23	16	40	1.91
10630922--10631232	155	2.0	155	98	0	595	27	17	25	29	1.97
10640894--10640919	13	2.0	13	100	0	52	84	0	0	15	0.62
10641003--10641116	31	3.6	31	82	11	149	64	8	3	23	1.38
10641010--10641115	35	3.2	34	80	14	139	63	8	3	24	1.40
10647316--10647369	5	10.2	5	88	4	54	14	5	0	79	0.90
10647330--10647356	6	4.5	6	100	0	54	14	0	0	85	0.61
10653765--10654206	62	7.3	61	83	6	503	28	17	17	36	1.92
10653765--10654206	123	3.6	120	86	7	522	28	17	17	36	1.92
10658057--10658105	12	3.8	12	75	19	53	51	0	8	40	1.32
10658209--10659020	84	9.6	84	91	3	1256	43	4	4	47	1.43
10658219--10659020	253	3.2	252	92	1	1324	43	4	4	47	1.43
10659163--10659203	10	4.1	10	80	0	55	17	36	21	24	1.94
10660448--10660773	29	11.2	28	70	16	175	30	4	32	31	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10660448--10660759	59	5.4	58	85	6	384	31	4	31	32	1.79
10662799--10662877	6	13.5	6	76	10	74	49	3	2	44	1.34
10662799--10662916	17	6.9	16	72	12	83	50	5	1	43	1.34
10665097--10665188	30	3.1	30	87	0	121	27	6	2	64	1.30
10665143--10665194	17	3.3	17	74	20	58	26	11	0	61	1.30
10666061--10666261	110	1.8	108	85	9	275	38	11	15	33	1.84
10666761--10666836	40	1.9	40	88	0	116	17	28	3	50	1.64
10667880--10667917	16	2.4	16	95	0	67	39	0	26	34	1.57
10668088--10668197	57	1.9	57	90	3	175	50	1	0	46	1.18
10669640--10669698	31	1.9	31	85	0	82	32	11	15	40	1.83
10670049--10670119	31	2.3	31	85	4	90	42	8	25	23	1.82
10672049--10672129	29	2.7	30	82	5	101	53	14	1	30	1.49
10675686--10675735	24	2.0	23	85	11	64	56	8	0	36	1.29
10675813--10675865	22	2.5	21	78	3	61	66	9	9	15	1.45
10677908--10677950	7	6.0	7	86	2	59	0	34	0	65	0.93
10677911--10677957	14	3.4	13	85	11	58	0	36	0	63	0.94
10689699--10689755	28	2.0	29	89	3	89	49	12	19	19	1.79
10689949--10690073	43	2.9	43	89	0	187	35	22	10	32	1.88
10693771--10693838	22	3.1	22	93	0	118	32	14	8	44	1.76
10731800--10731838	20	2.0	20	85	10	53	28	30	7	33	1.85
10732039--10732099	20	3.0	20	95	0	104	31	29	8	31	1.86
10732039--10732114	20	3.8	20	91	0	98	34	27	7	30	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10733003--10733035	17	2.0	17	88	5	50	15	6	0	78	0.93
10736296--10736337	16	2.6	16	80	20	52	52	11	7	28	1.64
10741304--10741420	45	2.6	45	81	5	130	22	20	19	37	1.94
10741354--10741599	45	5.6	43	78	5	215	23	19	15	40	1.90
10741686--10741719	16	2.0	18	88	11	54	64	8	0	26	1.22
10747401--10748226	4	206.5	4	83	3	624	39	30	2	27	1.70
10758592--10758631	17	2.4	17	82	0	53	82	0	12	5	0.82
10800555--10800606	24	2.2	24	85	0	68	32	19	19	28	1.96
10823094--10823153	3	20.0	3	80	13	70	66	0	33	0	0.92
10823554--10823595	17	2.4	17	84	11	50	14	14	11	59	1.61
10827287--10827372	20	4.7	20	72	21	98	34	24	16	24	1.95
10827306--10827335	15	2.0	15	100	0	60	33	26	13	26	1.93
10827472--10827528	24	2.5	22	86	8	71	36	24	10	28	1.88
10828082--10828486	53	7.6	53	87	0	542	35	20	16	28	1.94
10833766--10833806	20	2.0	20	86	9	57	58	14	9	17	1.62
10833823--10833881	21	2.8	21	79	5	66	38	32	13	15	1.86
10847953--10848004	15	3.5	14	82	17	61	73	0	25	1	0.94
10847951--10848002	18	2.9	17	88	5	68	73	0	25	1	0.94
10867875--10867907	12	2.7	12	95	4	57	57	0	0	42	0.98
10874994--10875044	24	2.2	22	79	6	57	66	5	21	5	1.35
10875000--10875043	22	2.0	21	86	9	52	63	6	22	6	1.43
10878188--10878434	53	4.6	53	90	1	377	36	22	15	26	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10878188--10878434	107	2.3	106	90	1	395	36	22	15	26	1.94
10878896--10878926	16	1.9	16	93	0	53	25	16	0	58	1.38
10885759--10885949	53	3.6	53	90	1	296	35	21	14	28	1.93
10888756--10888809	17	3.1	17	76	5	54	53	11	11	24	1.68
10888766--10888809	18	2.5	18	81	3	54	54	13	11	20	1.69
10894521--10894571	21	2.4	21	100	0	102	33	21	13	31	1.92
10896253--10896626	186	2.0	187	96	0	687	31	14	9	45	1.76
10903072--10903137	20	3.3	20	71	12	73	36	19	1	42	1.61
10918213--10918260	18	2.6	19	81	18	66	54	0	41	4	1.20
10924935--10924981	18	2.6	19	83	6	62	12	25	12	48	1.77

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143