Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032255.1 Gossypioides kirkii chromosome KI_13
Parameters: 2 7 7 80 10 50 1000
Length:  42971368

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   

This is table  143  of  143  ( 17057 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
42941966--42941990
6
4.2
6
100
0
50
48
52
0
0
1.00
42942046--42942087
20
2.1
20
86
0
57
19
19
21
40
1.92
42944491--42944533
18
2.4
18
92
0
68
9
11
25
53
1.67
42947247--42947283
12
3.1
12
85
14
58
24
27
0
48
1.51
42951955--42951987
13
2.5
13
95
5
57
15
21
24
39
1.91
42953388--42953461
6
12.0
6
80
5
58
21
2
1
74
1.02
42953377--42953461
18
4.7
18
76
5
73
23
2
1
72
1.03
42953491--42953526
16
2.3
15
90
4
54
13
5
2
77
1.05
42954808--42954870
30
2.1
30
100
0
126
31
9
19
39
1.83
42957459--42957567
30
3.5
31
79
12
100
50
7
0
41
1.36
42957486--42957544
14
4.2
14
71
14
50
50
10
1
37
1.46
42958842--42958887
2
23.0
2
100
0
92
50
0
50
0
1.00
42961843--42961887
20
2.2
21
88
4
65
37
2
0
60
1.09
42966330--42966359
15
2.0
15
100
0
60
53
6
6
33
1.53
42970409--42971048
7
93.7
7
94
5
1010
0
27
56
16
1.41
42970943--42971368
7
62.6
7
89
9
544
0
3
56
39
1.16
42970776--42971368
21
28.9
21
90
5
421
0
10
56
32
1.34

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143

The End!