genome.fa.s11.2.7.7.80.10.50.1000.112.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032255.1 Gossypioides kirkii chromosome KI_13
Parameters: 2 7 7 80 10 50 1000
Length:  42971368

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   

This is table  112  of  143  ( 17057 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34178993--34179279	117	2.4	116	85	5	373	20	15	34	29	1.94
34181798--34181832	18	1.9	18	100	0	70	45	20	5	28	1.73
34182508--34182532	4	6.2	4	100	0	50	0	24	52	24	1.48
34184427--34184457	16	1.9	16	93	0	53	54	3	0	41	1.16
34185161--34185207	24	1.9	25	91	4	78	36	14	10	38	1.81
34198167--34198244	15	5.1	15	73	16	70	74	6	0	19	1.03
34198173--34198231	17	3.5	18	76	19	65	76	8	0	15	1.01
34198158--34198238	32	2.6	31	88	5	119	72	6	0	20	1.05
34203721--34203782	23	2.7	23	94	0	106	32	17	38	11	1.85
34203721--34204106	28	13.2	28	70	18	189	31	20	34	13	1.91
34203744--34203815	33	2.2	33	97	0	135	33	16	40	9	1.81
34203777--34204157	23	16.7	23	71	19	205	31	20	34	13	1.91
34203777--34204157	51	8.3	46	67	20	173	31	20	34	13	1.91
34203721--34203876	5	28.2	5	69	15	78	32	19	37	10	1.85
34203989--34204162	5	31.2	5	67	19	60	32	20	35	12	1.89
34204096--34204170	28	2.7	28	100	0	150	30	21	36	12	1.90
34204581--34204614	16	2.1	17	88	5	52	29	23	0	47	1.52
34208525--34208566	19	2.3	18	84	8	50	54	2	9	33	1.46
34208561--34208602	16	2.4	18	80	15	52	59	2	0	38	1.10
34213799--34213829	2	15.5	2	93	0	53	48	0	0	51	1.00
34214902--34214971	2	35.0	2	100	0	140	50	0	0	50	1.00
34217524--34217567	18	2.2	21	84	11	58	68	0	0	31	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34217494--34217567	22	3.5	22	68	22	59	62	1	2	33	1.18
34217928--34217953	6	4.3	6	100	0	52	80	0	0	19	0.71
34221255--34221297	18	2.4	18	80	0	50	27	6	32	32	1.84
34227295--34227355	28	2.2	28	81	0	77	42	19	21	16	1.89
34229250--34229415	23	7.5	23	75	14	134	10	24	23	41	1.86
34229332--34229410	39	2.0	39	87	0	113	12	17	22	46	1.82
34230615--34230717	29	3.6	29	81	7	111	49	25	5	19	1.70
34230608--34230783	58	3.0	58	76	4	160	46	26	7	19	1.77
34230622--34230734	29	3.9	29	77	11	88	47	24	7	19	1.76
34230610--34230782	29	6.0	29	75	7	82	47	26	8	18	1.76
34234969--34235092	58	2.2	57	80	4	133	28	15	8	47	1.75
34236377--34236806	59	7.4	59	81	7	414	36	3	28	31	1.74
34236436--34236689	29	8.8	28	67	18	119	35	4	30	30	1.77
34236564--34236661	30	3.3	30	66	18	87	32	5	32	29	1.79
34236524--34236804	29	9.6	27	70	16	152	36	3	30	30	1.73
34238590--34238634	11	4.1	11	85	0	54	55	2	0	42	1.12
34238587--34238634	17	2.8	18	75	12	57	54	2	0	43	1.12
34241326--34241358	16	2.0	17	94	5	59	54	0	0	45	0.99
34243150--34243611	178	2.6	176	93	2	782	36	4	28	30	1.78
34243150--34243611	59	7.8	59	94	0	784	36	4	28	30	1.78
34243756--34244062	161	1.9	162	87	2	456	46	15	14	23	1.82
34243784--34244136	161	2.2	161	81	4	399	48	14	15	22	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34244478--34244522	12	3.8	12	88	5	65	0	31	0	68	0.89
34244487--34244522	11	3.2	11	92	7	63	0	27	0	72	0.85
34244478--34244522	23	2.0	23	90	0	72	0	31	0	68	0.89
34244823--34244855	2	16.5	2	100	0	66	48	0	0	51	1.00
34245564--34245630	6	11.2	6	80	12	75	52	2	0	44	1.16
34245605--34245654	27	1.9	25	84	15	66	60	6	2	32	1.32
34246668--34246700	14	2.4	14	94	0	57	45	0	0	54	0.99
34247852--34247876	3	8.3	3	100	0	50	32	0	0	68	0.90
34248086--34248125	19	2.1	19	100	0	80	25	5	32	37	1.77
34255468--34255517	20	2.5	20	83	3	57	46	2	2	50	1.24
34257506--34257543	20	1.9	20	88	0	58	71	2	0	26	1.00
34257495--34257545	15	3.6	14	78	10	59	68	1	0	29	1.00
34264978--34265028	22	2.4	21	81	9	59	58	0	0	41	0.98
34266950--34267022	30	2.4	29	78	14	76	30	4	6	58	1.43
34267175--34267258	29	3.0	28	80	13	100	65	4	1	28	1.20
34267361--34267401	15	2.7	15	100	0	82	29	34	4	31	1.79
34271353--34271388	12	2.9	12	91	4	54	33	5	0	61	1.19
34271440--34271502	28	2.3	27	91	5	108	46	25	14	14	1.82
34272693--34273002	161	1.9	162	86	3	437	26	17	13	43	1.85
34273099--34273415	30	10.7	29	80	5	303	38	23	1	35	1.65
34273365--34273560	59	3.4	57	76	6	216	29	29	4	37	1.76
34276137--34276168	12	2.5	13	95	5	57	43	0	3	53	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34276480--34276557	29	2.5	32	76	13	76	53	0	3	42	1.19
34276528--34276579	18	3.0	18	84	13	65	53	0	0	46	1.00
34276581--34276624	18	2.4	19	81	14	56	56	0	2	40	1.11
34280627--34280667	21	2.0	21	95	0	73	36	17	21	24	1.94
34281982--34282037	15	3.5	15	69	21	51	46	0	3	50	1.19
34282065--34282104	15	2.8	16	82	17	52	47	0	0	52	1.00
34282546--34282751	104	2.0	104	99	0	403	17	16	17	48	1.82
34286068--34286122	23	2.7	20	81	18	60	38	5	14	41	1.69
34291319--34291682	30	12.1	29	72	13	103	37	2	25	35	1.68
34291304--34291365	29	2.1	30	82	8	74	38	3	25	32	1.72
34291387--34291652	59	4.5	59	79	10	281	35	1	27	35	1.66
34291385--34291696	60	5.2	57	80	10	295	35	1	27	34	1.67
34291384--34291663	120	2.3	120	84	5	336	36	1	27	35	1.66
34293075--34293168	48	2.0	48	82	0	116	24	22	15	37	1.93
34293087--34293708	209	3.0	208	88	1	879	25	21	16	36	1.94
34293510--34293879	172	2.2	171	92	1	607	25	23	15	35	1.94
34293807--34293964	85	1.9	85	85	5	221	27	22	13	36	1.92
34303476--34303553	29	2.7	29	79	2	84	42	2	20	34	1.66
34303479--34303789	30	10.5	30	77	5	276	37	1	24	36	1.66
34306168--34306192	4	6.2	4	100	0	50	48	0	0	52	1.00
34306339--34306444	48	2.2	48	85	6	144	38	0	7	53	1.29
34317211--34317240	14	2.1	15	93	6	53	50	6	13	30	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34321287--34321317	3	10.3	3	92	0	53	64	0	32	3	1.09
34326876--34326930	23	2.4	23	79	8	60	41	3	0	54	1.18
34340509--34340621	9	12.6	9	81	3	102	15	7	37	40	1.74
34342058--34342095	14	2.7	15	80	19	55	36	5	0	57	1.21
34344171--34344359	94	2.0	94	100	0	378	28	19	23	29	1.98
34345367--34345409	7	6.1	7	83	0	50	48	0	0	51	1.00
34345371--34345430	28	2.1	28	84	6	77	36	1	3	58	1.25
34345818--34345867	26	1.9	26	83	0	64	34	8	0	58	1.28
34349546--34349604	24	2.5	24	85	0	82	49	10	13	27	1.74
34353914--34353954	21	2.0	21	85	0	55	36	14	36	12	1.84
34376531--34376574	2	22.0	2	100	0	88	0	50	0	50	1.00
34378503--34378536	16	2.1	17	88	5	52	35	0	2	61	1.11
34379238--34379304	30	2.3	28	78	14	73	53	5	13	26	1.62
34382276--34382446	85	2.0	85	97	0	324	34	10	6	48	1.63
34383389--34383431	18	2.3	19	80	4	52	48	4	6	39	1.51
34383435--34383478	9	4.6	9	83	8	52	75	2	2	20	1.03
34387813--34387860	3	16.3	3	95	4	89	68	0	0	31	0.90
34390395--34390482	23	3.8	23	75	4	70	39	20	11	28	1.87
34390499--34390523	4	6.2	4	100	0	50	76	24	0	0	0.80
34391877--34391909	16	2.1	17	88	11	52	18	0	0	81	0.68
34391877--34391909	14	2.2	16	89	10	52	18	0	0	81	0.68
34392347--34392371	2	12.5	2	100	0	50	52	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34393414--34393457	17	2.7	15	80	19	52	43	4	2	50	1.35
34395288--34395596	58	5.3	58	79	8	299	33	29	2	33	1.73
34395327--34395478	29	5.3	29	70	13	116	32	30	3	33	1.76
34395353--34395453	28	3.5	26	71	20	78	30	32	4	31	1.79
34395287--34395596	115	2.7	116	81	5	333	33	29	2	33	1.73
34397815--34397858	18	2.4	19	84	3	54	65	11	0	22	1.24
34404533--34404573	12	3.8	11	84	15	50	51	12	26	9	1.70
34407945--34407973	14	2.0	15	93	6	51	34	0	17	48	1.47
34408020--34408044	12	2.1	12	100	0	50	44	0	16	40	1.47
34417608--34417648	20	2.0	20	95	0	73	24	12	21	41	1.87

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143