genome.fa.s11.2.7.7.80.10.50.1000.115.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032255.1 Gossypioides kirkii chromosome KI_13
Parameters: 2 7 7 80 10 50 1000
Length:  42971368

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   

This is table  115  of  143  ( 17057 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35124103--35124136	3	11.3	3	100	0	68	35	0	0	64	0.94
35124249--35124298	24	2.2	22	80	20	59	48	0	0	52	1.00
35134789--35134856	34	2.0	34	91	0	109	17	14	25	42	1.87
35135257--35135309	15	3.6	14	80	12	54	56	1	1	39	1.21
35143967--35144362	199	2.0	199	94	0	693	29	18	19	32	1.96
35153839--35153918	30	2.6	31	74	5	74	40	12	15	32	1.84
35157091--35157137	25	1.9	25	82	4	60	6	17	2	74	1.12
35158314--35158346	16	2.0	17	88	5	50	54	0	3	42	1.15
35159111--35159164	26	2.1	26	89	0	81	48	0	5	46	1.25
35159512--35159545	17	2.0	17	88	0	50	64	2	2	29	1.22
35169581--35169646	32	2.1	32	94	0	114	33	12	24	30	1.91
35170650--35170704	28	2.0	28	82	7	67	36	1	5	56	1.33
35170678--35170768	6	15.0	6	74	11	69	48	3	1	47	1.25
35170684--35170743	31	1.9	31	89	0	93	41	3	1	53	1.27
35170669--35170742	17	4.6	16	80	11	80	39	2	1	56	1.22
35171781--35171837	26	2.4	23	76	23	64	63	5	14	17	1.48
35171820--35171867	21	2.3	22	86	10	66	72	4	12	10	1.24
35172286--35172597	162	1.9	162	88	3	468	25	15	12	45	1.82
35172694--35172841	60	2.5	59	91	1	233	39	22	2	35	1.68
35172696--35172863	30	5.7	29	83	1	174	38	24	2	35	1.69
35172813--35172945	59	2.3	59	85	6	182	33	28	2	35	1.70
35172850--35172945	30	3.2	30	73	18	110	30	29	3	37	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35172854--35172945	29	3.1	29	72	18	100	30	28	3	38	1.73
35185096--35185752	68	9.8	68	87	4	942	33	17	22	27	1.96
35185096--35185752	137	4.9	137	91	4	1018	33	17	22	27	1.96
35185570--35185752	37	5.3	36	68	15	143	32	17	22	26	1.96
35185347--35185732	192	2.0	193	94	0	684	34	17	22	25	1.96
35186095--35186185	6	15.0	6	72	11	60	48	4	1	46	1.29
35186086--35186159	17	4.6	16	77	11	71	39	4	1	55	1.27
35187212--35187268	26	2.4	23	76	23	64	63	5	14	17	1.48
35187251--35187298	21	2.3	22	86	10	66	72	4	12	10	1.24
35187724--35188020	161	1.8	162	88	2	454	25	16	13	44	1.83
35188130--35188370	30	8.0	30	90	3	324	38	22	2	36	1.68
35188143--35188417	60	4.6	58	80	10	202	37	23	2	37	1.67
35188379--35188474	30	3.2	30	72	22	103	30	27	4	38	1.75
35188383--35188474	29	3.1	29	71	23	93	30	26	4	39	1.75
35190812--35190876	17	4.0	17	78	11	73	53	0	4	41	1.21
35190825--35190895	11	6.5	11	72	15	58	56	0	4	39	1.19
35190823--35190893	31	2.4	29	88	4	97	56	0	4	39	1.19
35191132--35191253	38	3.2	38	67	17	108	31	20	14	32	1.93
35191191--35191664	68	6.9	68	94	1	799	28	20	16	34	1.94
35201885--35202168	59	4.8	59	91	2	439	36	4	27	31	1.77
35201885--35202168	117	2.4	117	88	4	437	36	4	27	31	1.77
35201892--35202168	30	9.4	29	69	12	181	37	3	26	32	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35202173--35202489	30	10.6	30	90	1	467	35	2	24	37	1.68
35203328--35203360	15	2.2	15	100	0	66	45	18	18	18	1.86
35204387--35204451	17	4.0	17	78	11	73	53	0	4	41	1.21
35204400--35204470	11	6.5	11	72	15	58	56	0	4	39	1.19
35204398--35204468	31	2.4	29	88	4	97	56	0	4	39	1.19
35211634--35211845	106	2.1	100	87	5	298	27	16	16	39	1.90
35220013--35220056	23	1.9	23	90	0	70	61	4	2	31	1.28
35220017--35220059	11	3.8	11	80	17	52	65	2	2	30	1.18
35220014--35220091	27	2.9	27	75	16	74	58	5	1	34	1.28
35220562--35220619	28	2.2	28	79	17	70	63	0	0	36	0.94
35222129--35222171	22	1.9	23	90	4	70	9	30	16	44	1.79
35224948--35225022	29	2.6	30	91	4	111	49	0	9	41	1.35
35233028--35233078	20	2.5	19	84	12	57	35	0	7	56	1.28
35233045--35233087	20	2.2	19	83	4	50	39	4	2	53	1.34
35233858--35233916	30	2.0	29	87	9	84	52	0	1	45	1.10
35234385--35234452	26	2.6	26	92	2	109	35	5	1	57	1.32
35236061--35236123	31	2.1	31	93	3	110	41	23	12	22	1.88
35240136--35240163	13	2.2	13	100	0	56	39	0	0	60	0.97
35240133--35240164	16	2.0	16	93	0	55	40	0	0	59	0.97
35242250--35242312	31	2.0	31	87	0	90	31	12	12	42	1.81
35247405--35247434	3	10.0	3	100	0	60	33	33	0	33	1.58
35248610--35248643	17	2.0	17	88	0	50	70	5	11	11	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35253498--35253773	134	2.0	136	86	4	385	31	19	14	35	1.91
35263136--35263185	4	12.8	4	83	12	68	76	0	24	0	0.80
35263136--35263195	7	8.4	7	85	7	68	73	0	25	1	0.93
35263131--35263204	29	2.5	28	79	12	78	68	0	28	2	1.03
35263391--35263416	13	2.0	13	100	0	52	46	0	0	53	1.00
35263571--35263613	21	2.1	21	86	4	61	25	2	13	58	1.48
35265777--35265818	21	2.0	21	95	4	77	19	38	16	26	1.92
35266058--35266133	14	5.4	14	71	22	61	46	23	1	28	1.61
35266065--35266133	28	2.5	27	83	6	93	46	23	1	28	1.61
35269124--35269168	4	10.8	4	81	9	54	0	31	0	68	0.89
35269122--35269169	17	2.8	18	81	12	64	0	33	0	66	0.92
35269471--35269499	8	3.8	8	95	4	51	86	0	0	13	0.58
35269939--35269992	26	2.0	28	85	7	76	48	3	0	48	1.19
35269988--35270030	16	2.6	17	82	10	63	62	0	0	37	0.95
35269983--35270029	24	1.9	25	83	12	62	59	0	0	40	0.97
35269988--35270029	8	5.2	8	77	11	50	64	0	0	35	0.94
35270198--35270240	21	2.0	21	86	0	59	74	4	0	20	1.00
35270188--35270240	11	4.6	11	81	11	54	73	3	0	22	0.99
35277406--35277522	11	10.7	11	70	10	53	68	19	5	5	1.32
35277404--35277459	23	2.4	23	85	5	69	73	19	3	3	1.13
35277433--35277506	31	2.4	31	81	4	96	67	18	6	6	1.36
35277475--35277522	22	2.1	22	84	3	60	68	16	6	8	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35277813--35277856	22	2.0	22	100	0	88	50	13	13	22	1.77
35293622--35293665	20	2.3	19	84	11	54	31	4	4	59	1.38
35294289--35294341	10	5.6	9	78	10	52	71	1	0	26	0.96
35294290--35294341	19	2.7	19	90	3	77	71	1	0	26	0.97
35294291--35294349	19	3.2	19	83	9	68	67	1	0	30	1.00
35294290--35294345	9	6.0	9	77	8	58	67	1	0	30	1.01
35294695--35294779	31	2.7	31	78	5	100	30	2	8	58	1.40
35294695--35294779	30	2.7	31	80	5	100	30	2	8	58	1.40
35303272--35303313	19	2.3	19	87	4	59	38	2	2	57	1.25
35306280--35306322	20	2.0	20	86	8	59	25	6	0	67	1.15
35306583--35306633	24	2.1	25	88	3	77	5	37	13	43	1.69
35317485--35317594	55	2.0	55	94	0	193	35	14	7	42	1.73
35318067--35318226	60	2.6	60	80	10	166	36	13	5	44	1.67
35320206--35320256	24	2.1	24	96	0	93	56	9	11	21	1.63
35322188--35322245	24	2.4	24	88	0	89	50	12	13	24	1.76
35323590--35323618	14	2.0	15	93	6	51	65	6	0	27	1.18
35323943--35324061	62	1.9	61	81	8	143	43	16	4	35	1.68
35326381--35326643	60	4.4	60	82	2	291	33	22	2	41	1.66
35326353--35326643	30	9.8	30	77	7	231	33	21	2	41	1.66
35330103--35330140	18	2.1	18	100	0	76	44	13	15	26	1.83
35330109--35330146	9	4.2	9	86	0	58	47	10	18	23	1.79
35331114--35331143	11	2.7	11	94	0	51	16	6	0	76	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35334016--35334059	22	2.0	22	82	8	54	29	11	4	54	1.56
35337221--35337310	6	15.0	6	74	16	62	46	4	0	48	1.22
35337221--35337293	17	4.5	17	80	13	82	41	5	0	53	1.24
35337211--35337302	11	8.5	11	71	7	53	44	4	1	50	1.29
35337233--35337333	17	6.1	17	69	14	50	50	5	0	43	1.26
35337392--35337460	27	2.6	27	88	2	104	42	31	11	14	1.82
35339088--35339866	59	13.3	58	84	5	939	32	28	3	35	1.76
35339088--35339872	176	4.5	176	84	4	989	32	28	4	35	1.76
35339088--35339871	235	3.3	232	85	5	1019	32	28	4	35	1.76
35339088--35339866	294	2.7	292	87	5	1092	32	28	3	35	1.76

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143