genome.fa.s11.2.7.7.80.10.50.1000.130.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032255.1 Gossypioides kirkii chromosome KI_13
Parameters: 2 7 7 80 10 50 1000
Length:  42971368

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   

This is table  130  of  143  ( 17057 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38105713--38105764	25	2.1	25	92	0	86	67	5	0	26	1.13
38107474--38107534	30	2.1	29	84	9	79	54	8	3	34	1.47
38113161--38113290	57	2.3	57	83	4	163	33	0	16	50	1.45
38113969--38113993	10	2.5	10	100	0	50	64	0	0	36	0.94
38114918--38114963	21	2.2	21	88	0	65	8	28	36	26	1.86
38118913--38118965	20	2.8	20	88	11	76	18	5	0	75	0.99
38118913--38118965	10	5.5	10	82	10	58	18	5	0	75	0.99
38121945--38121969	12	2.1	12	100	0	50	48	8	16	28	1.74
38123908--38123981	38	1.9	38	81	5	87	31	16	6	45	1.73
38124537--38124574	18	2.1	18	100	0	76	52	0	0	47	1.00
38124964--38125670	377	1.9	369	83	5	929	30	14	9	45	1.77
38124873--38125743	372	2.3	373	81	6	966	31	13	9	45	1.76
38133525--38133610	43	2.0	43	100	0	172	37	11	16	34	1.85
38137081--38137111	10	3.1	10	100	0	62	51	38	0	9	1.35
38146683--38146717	18	1.9	18	88	0	52	20	14	8	57	1.63
38152046--38152111	31	2.1	30	83	8	87	46	15	9	28	1.76
38152746--38152778	16	2.1	16	88	11	50	66	3	0	30	1.06
38154562--38154592	4	7.5	4	92	7	53	45	0	0	54	0.99
38154555--38154592	12	3.0	13	88	7	60	44	0	2	52	1.14
38176620--38176685	31	2.2	29	83	5	78	48	7	0	43	1.31
38177927--38177990	30	2.1	30	85	0	83	32	15	9	42	1.79
38183579--38183704	46	2.7	48	78	8	134	11	21	19	46	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38183578--38183704	23	5.4	23	75	5	103	11	21	20	46	1.82
38185071--38185115	23	2.0	23	82	8	56	40	2	0	57	1.11
38185097--38185158	31	2.0	30	84	9	81	30	1	1	66	1.11
38187062--38187107	18	2.8	16	84	12	65	47	8	21	21	1.77
38188940--38188969	14	2.1	15	93	6	53	56	0	0	43	0.99
38197851--38197893	20	2.2	19	87	4	59	34	6	9	48	1.62
38217115--38217161	21	2.2	21	88	0	67	40	0	2	57	1.11
38233442--38233498	27	2.1	27	93	0	96	42	1	1	54	1.21
38233535--38233584	13	3.4	15	70	13	50	44	4	2	50	1.32
38242969--38243114	73	2.0	73	98	0	283	37	13	8	39	1.76
38243187--38243434	127	2.0	127	87	1	363	35	10	14	39	1.81
38247387--38247532	78	1.9	78	88	1	222	29	21	17	31	1.96
38253897--38253968	30	2.4	29	83	4	81	37	9	5	47	1.60
38267442--38267609	45	3.7	45	87	1	239	29	19	26	25	1.98
38268884--38269074	100	1.9	101	87	6	282	43	10	4	41	1.59
38271940--38272221	141	2.0	141	86	4	399	23	18	17	40	1.91
38279163--38279201	15	2.5	16	83	8	53	56	7	2	33	1.41
38296407--38296431	12	2.1	12	100	0	50	44	0	8	48	1.32
38297743--38297856	55	2.1	55	100	0	228	28	8	7	55	1.57
38300123--38300329	29	7.0	29	66	23	105	31	2	32	32	1.73
38300125--38300476	59	6.2	59	82	8	408	34	2	31	31	1.71
38300321--38300422	50	2.1	49	87	7	145	37	2	31	28	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38300262--38300476	108	2.0	107	88	2	324	35	2	31	30	1.72
38300370--38300487	58	2.0	59	83	6	152	36	3	27	32	1.74
38300775--38300838	32	2.0	32	84	9	85	59	6	14	20	1.56
38302350--38302414	6	10.8	6	74	12	62	55	0	4	40	1.21
38302351--38302425	17	4.6	17	83	9	102	57	1	4	37	1.26
38309092--38309122	3	10.3	3	100	0	62	67	0	0	32	0.91
38309473--38309563	43	2.1	43	100	0	182	23	27	19	29	1.98
38318759--38318818	31	1.9	32	86	3	86	38	3	11	46	1.57
38319526--38319566	21	2.0	21	85	9	57	36	21	9	31	1.86
38320817--38320855	18	2.2	18	100	0	78	51	10	5	33	1.58
38331545--38331597	25	2.1	25	82	6	63	50	1	20	26	1.58
38331675--38331781	22	4.7	22	69	7	70	23	3	6	66	1.32
38331675--38331731	11	5.2	11	80	0	60	21	1	5	71	1.14
38332460--38332518	29	2.0	31	86	6	86	32	3	15	49	1.61
38332688--38332768	29	2.7	30	81	9	94	51	9	4	33	1.56
38334733--38334775	18	2.4	18	80	7	52	51	0	2	46	1.13
38339837--38339893	29	2.0	29	96	0	105	35	17	14	33	1.90
38341709--38341781	36	2.0	36	94	0	128	23	16	21	38	1.93
38343452--38343492	20	2.0	20	95	0	73	51	0	26	21	1.48
38351206--38351243	18	2.2	18	85	4	51	57	10	2	28	1.45
38355110--38355136	5	5.4	5	100	0	54	40	18	22	18	1.91
38361450--38361542	24	3.9	24	82	1	116	44	19	11	24	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38361628--38361663	12	3.0	12	91	0	54	50	13	13	22	1.77
38364234--38364277	16	2.6	17	86	13	65	56	0	0	43	0.99
38364245--38364286	18	2.3	18	88	8	59	57	2	0	40	1.12
38365749--38365792	18	2.4	18	85	7	54	50	2	0	47	1.13
38365759--38365848	44	2.1	44	82	2	110	42	7	2	47	1.44
38366335--38366383	10	5.0	9	80	11	53	69	4	2	24	1.17
38366335--38366383	19	2.5	20	86	6	64	69	4	2	24	1.17
38367657--38367714	18	3.2	18	95	0	98	36	6	8	48	1.61
38374503--38374552	2	25.0	2	83	0	55	54	6	0	40	1.25
38374503--38374552	24	2.1	24	96	0	91	54	6	0	40	1.25
38380440--38380474	17	2.0	17	88	5	52	62	5	2	28	1.32
38382885--38382958	2	37.0	2	100	0	148	0	50	0	50	1.00
38384640--38384711	30	2.4	31	88	6	103	19	13	19	47	1.83
38387330--38387378	22	2.5	18	77	22	62	40	4	20	34	1.71
38387338--38387383	22	2.1	22	100	0	92	45	4	17	32	1.68
38387652--38387754	37	2.7	38	72	6	91	23	19	26	31	1.98
38398797--38398837	22	1.9	22	85	5	57	36	0	7	56	1.27
38417731--38417838	58	1.9	58	83	7	141	44	10	2	42	1.52
38420208--38420297	17	5.3	16	75	7	63	47	2	2	47	1.26
38420208--38420297	6	15.8	6	69	19	59	47	2	2	47	1.26
38420219--38420297	34	2.3	33	81	10	97	49	2	1	46	1.23
38422204--38422300	28	3.4	28	74	17	101	31	29	1	37	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38422223--38422313	28	3.2	28	71	17	80	35	27	2	35	1.69
38422232--38422625	29	13.4	30	66	22	135	30	29	4	35	1.76
38422193--38422594	59	6.8	58	86	4	515	32	29	3	35	1.74
38422282--38422594	30	10.6	29	67	20	114	31	29	4	35	1.76
38422193--38422623	119	3.7	115	83	7	532	31	29	3	35	1.74
38423995--38424019	6	4.2	6	100	0	50	16	16	16	52	1.76
38431564--38431612	20	2.6	19	81	12	66	44	2	4	48	1.33
38432363--38432409	18	2.6	19	80	12	55	46	4	0	48	1.21
38434028--38434077	25	1.9	25	84	8	64	62	4	0	34	1.14
38445900--38445946	21	2.2	22	81	11	53	48	0	0	51	1.00
38447338--38447394	25	2.2	25	78	9	62	75	1	17	5	1.07
38447410--38447475	28	2.3	28	86	2	87	57	0	1	40	1.08
38447389--38447475	28	3.1	29	80	9	83	57	0	4	37	1.19
38449579--38449620	14	3.2	13	77	16	50	33	0	4	61	1.17
38451834--38451877	18	2.5	17	82	17	54	34	2	2	61	1.21
38452014--38452067	26	2.1	25	86	10	74	31	20	0	48	1.50
38461382--38461485	27	3.7	27	68	20	77	26	15	10	47	1.78
38461381--38461521	59	2.4	59	86	4	196	24	14	10	49	1.75
38461746--38461819	31	2.4	31	86	4	96	43	12	17	27	1.84
38461688--38461865	90	2.0	90	82	2	214	45	12	17	24	1.83
38463654--38463707	22	2.5	22	85	8	67	61	7	5	25	1.45
38472668--38472717	27	1.9	26	84	8	66	50	6	4	40	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38472968--38473005	16	2.2	18	86	9	53	47	2	2	47	1.30
38474609--38474737	32	4.0	32	94	0	213	21	31	6	40	1.78
38476432--38476492	29	2.1	30	87	3	88	34	21	19	24	1.96
38496666--38496694	3	9.7	3	100	0	58	0	31	0	68	0.89
38503489--38503829	170	2.0	170	100	0	682	44	11	17	26	1.82
38505055--38505101	24	2.0	24	95	0	85	25	8	6	59	1.50
38511323--38511360	15	2.4	17	82	13	53	34	0	0	65	0.93
38523781--38523824	22	2.0	22	95	0	79	47	13	11	27	1.77
38527966--38528017	22	2.3	23	90	6	88	50	15	19	15	1.79
38536639--38536689	7	7.3	7	93	0	84	13	0	54	31	1.39

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143