Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032255.1 Gossypioides kirkii chromosome KI_13
Parameters: 2 7 7 80 10 50 1000
Length:  42971368

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   

This is table  132  of  143  ( 17057 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
38824063--38824104
17
2.5
17
84
0
57
76
0
0
23
0.79
38824105--38824142
19
2.1
19
85
5
51
31
7
0
60
1.25
38829697--38829726
10
2.9
10
95
5
51
73
0
0
26
0.84
38834199--38834231
17
1.9
17
93
0
57
57
12
0
30
1.35
38834188--38834232
22
2.0
24
86
8
67
57
11
0
31
1.33
38836292--38836339
25
1.9
25
83
8
62
25
10
4
60
1.47
38846180--38846223
23
2.0
23
81
4
54
40
6
4
47
1.50
38853627--38853653
7
3.9
7
100
0
54
14
0
40
44
1.46
38854126--38854155
14
2.1
15
93
6
53
43
0
0
56
0.99
38854135--38854185
22
2.2
22
79
6
57
50
1
1
45
1.24
38861346--38861379
3
11.3
3
100
0
68
67
0
0
32
0.91
38872847--38872909
28
2.4
25
84
12
81
23
7
12
55
1.63
38872897--38872958
29
2.1
29
85
8
81
40
9
3
46
1.53
38884656--38884724
36
1.9
36
96
0
129
37
10
20
31
1.86
38900344--38900382
20
2.0
20
89
0
60
33
7
5
53
1.51
38902729--38902807
31
2.6
30
86
6
97
36
11
10
41
1.75
38906911--38906947
8
4.6
8
89
0
56
72
2
2
21
1.09
38913323--38913350
14
2.0
14
100
0
56
21
21
7
50
1.72
38914713--38914758
23
2.1
23
88
8
69
65
4
0
30
1.12
38920120--38920191
35
2.1
35
87
10
103
50
1
1
47
1.18
38922572--38922618
21
2.2
21
84
0
58
21
2
6
70
1.20
38922974--38923003
15
1.9
15
93
6
51
30
0
0
70
0.88
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
38922975--38923021
19
2.6
19
81
15
55
25
2
0
72
0.96
38925933--38925984
16
3.3
16
74
15
54
19
23
0
57
1.40
38929416--38929493
25
3.0
26
73
21
81
66
1
0
32
1.00
38929417--38929494
26
3.0
26
75
12
79
66
1
0
32
1.00
38929672--38929715
21
2.1
21
84
16
56
29
2
11
56
1.46
38929672--38929714
20
2.1
21
83
12
54
30
2
11
55
1.48
38931135--38931174
2
20.0
2
94
0
71
47
0
2
50
1.14
38931792--38931912
59
2.0
60
84
7
158
38
13
8
39
1.74
38933845--38933883
6
6.5
6
82
11
53
46
0
30
23
1.53
38938288--38938313
6
4.3
6
100
0
52
15
19
30
34
1.93
38953117--38953161
24
1.9
23
82
13
56
24
13
4
57
1.54
38954662--38954687
12
2.2
12
100
0
52
53
0
0
46
1.00
38969926--38969979
22
2.5
22
73
11
56
55
11
16
16
1.68
38972328--38972394
29
2.3
29
82
5
73
52
5
8
32
1.57
38972779--38972826
25
1.9
25
95
0
87
27
4
18
50
1.65
38974479--38974514
15
2.3
16
90
4
56
83
0
16
0
0.65
38991544--38991578
4
8.8
4
87
0
52
45
22
2
28
1.67
38999512--38999539
12
2.3
12
100
0
56
0
7
7
85
0.73
39007111--39007143
13
2.5
13
90
9
50
27
12
0
60
1.32
39008020--39008110
31
3.0
30
79
3
94
46
8
16
28
1.77
39008332--39008375
20
2.4
17
80
20
61
29
4
38
27
1.76
39008338--39008379
20
2.1
20
100
0
84
28
4
38
28
1.77
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
39014464--39014502
15
2.4
16
87
8
53
35
0
0
64
0.94
39016706--39016767
3
20.3
3
93
3
106
64
3
32
0
1.09
39017037--39017084
24
2.0
24
84
4
62
52
4
2
41
1.32
39017035--39017088
23
2.4
22
81
9
63
48
3
1
46
1.30
39018827--39018952
57
2.2
57
86
2
171
23
13
21
41
1.89
39018827--39018969
57
2.5
57
82
4
144
24
13
20
40
1.89
39021476--39021521
21
2.2
21
84
0
56
6
8
13
71
1.29
39030260--39030288
14
2.0
15
93
6
51
48
20
17
13
1.81
39039714--39039769
25
2.3
24
84
3
76
46
0
0
53
1.00
39040089--39040135
24
2.0
24
87
8
69
57
2
2
38
1.23
39051736--39051789
25
2.0
26
86
13
74
62
1
0
35
1.06
39051740--39051776
19
2.0
18
89
5
56
64
2
0
32
1.07
39051739--39051791
17
3.1
17
78
10
54
64
1
0
33
1.05
39051736--39051790
28
2.0
28
82
13
69
63
1
0
34
1.05
39053149--39053202
11
4.5
11
75
20
54
18
1
7
72
1.17
39053152--39053204
26
2.0
25
89
7
79
20
1
7
69
1.22
39056479--39056520
22
1.9
22
85
9
59
33
2
7
57
1.39
39056967--39056999
8
4.0
8
96
4
57
48
0
0
51
1.00
39060925--39060954
2
15.0
2
100
0
60
0
50
0
50
1.00
39063730--39063896
83
2.0
83
100
0
334
23
15
17
42
1.88
39066882--39066985
12
8.1
12
70
14
64
66
18
4
10
1.39
39066943--39066994
24
2.2
24
82
0
59
71
15
5
7
1.29
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
39073516--39073575
30
2.0
30
96
0
111
26
18
8
46
1.77
39087545--39087599
22
2.4
22
84
6
65
38
0
3
58
1.16
39092707--39092777
37
1.9
36
83
8
90
36
0
8
54
1.31
39096138--39096183
2
23.0
2
91
8
76
50
0
2
47
1.13
39098074--39098130
28
2.0
28
83
6
71
40
0
1
57
1.09
39099762--39099901
69
2.0
70
92
1
237
32
17
10
40
1.82
39102342--39102385
15
2.7
15
82
10
52
65
0
2
31
1.05
39108860--39108884
9
2.8
9
100
0
50
32
0
12
56
1.36
39117286--39117322
19
2.0
18
89
5
56
64
0
0
35
0.94
39120503--39120566
31
2.1
31
87
0
92
35
14
9
40
1.78
39131918--39131975
19
3.1
19
80
9
57
60
0
3
36
1.14
39132919--39132949
2
15.5
2
100
0
62
0
48
0
51
1.00
39134557--39134583
12
2.2
12
100
0
54
51
25
7
14
1.68
39150008--39150050
9
4.8
9
82
0
50
32
9
41
16
1.80
39150053--39150094
15
2.8
15
88
0
66
50
0
47
2
1.14
39150056--39150094
18
2.2
18
85
0
51
51
0
46
2
1.14
39158695--39158756
23
2.7
23
87
2
88
41
0
1
56
1.09
39159277--39159366
45
2.0
45
100
0
180
48
8
8
33
1.65
39159563--39159595
14
2.4
14
100
0
66
48
0
6
45
1.27
39164461--39164500
4
10.0
4
91
0
53
30
27
17
25
1.97
39167476--39167525
18
2.7
19
87
6
68
46
4
6
44
1.47
39174821--39174887
32
2.1
31
86
2
89
29
16
10
43
1.81
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
39178154--39178225
35
2.1
35
100
0
144
27
5
30
36
1.80
39183575--39183599
6
4.2
6
100
0
50
68
0
32
0
0.90
39184165--39184203
17
2.4
16
84
12
53
51
17
0
30
1.46
39186359--39186592
112
2.1
108
89
3
351
44
14
14
26
1.83
39196506--39196557
2
27.0
2
92
7
90
50
0
0
50
1.00
39199983--39200029
4
11.8
4
95
0
76
19
0
4
76
0.95
39208926--39208989
29
2.2
29
86
8
85
45
14
9
31
1.76
39208935--39208993
29
2.0
30
93
3
102
45
16
8
28
1.77
39209616--39209660
21
2.1
22
88
12
67
64
4
2
28
1.25
39213101--39213151
3
17.0
3
100
0
102
33
0
33
33
1.58
39215827--39215851
3
8.3
3
100
0
50
0
32
0
68
0.90
39217737--39217763
2
13.5
2
100
0
54
48
0
0
51
1.00
39219757--39219795
17
2.3
17
81
0
51
51
0
2
46
1.14
39222084--39222111
3
9.3
3
100
0
56
0
35
0
64
0.94
39236333--39236389
30
1.9
30
85
3
80
47
10
1
40
1.48
39246318--39246376
11
5.4
11
75
0
55
16
5
10
67
1.37
39254121--39254163
18
2.4
18
88
7
61
53
0
0
46
1.00
39255262--39255294
15
2.1
17
88
11
52
30
3
0
66
1.06
39255610--39255641
15
2.1
16
94
5
57
28
0
3
68
1.04
39257535--39257559
6
4.2
6
100
0
50
52
16
0
32
1.44
39265553--39265665
45
2.5
45
88
4
158
23
57
7
12
1.59
39279054--39279118
16
4.1
15
72
18
51
43
6
4
46
1.49
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
39280233--39280292
30
2.0
30
100
0
120
43
3
6
46
1.46
39282040--39282074
14
2.5
14
95
0
61
68
5
0
25
1.11
39286416--39286457
18
2.5
18
85
11
54
26
2
2
69
1.13
39289601--39289640
18
2.3
18
87
8
57
47
5
0
47
1.24
39290180--39290243
24
3.1
19
76
22
65
67
21
3
7
1.31
39290194--39290318
12
10.8
12
65
10
55
67
17
5
9
1.38
39290197--39290382
55
3.6
53
75
14
174
66
18
6
8
1.40
39290251--39290350
23
4.4
24
77
6
84
67
16
8
9
1.41
39290240--39290330
47
2.0
45
84
4
119
68
14
6
10
1.39
39290201--39290382
99
1.8
102
86
5
273
66
18
6
8
1.41

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143