genome.fa.s11.2.7.7.80.10.50.1000.129.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032255.1 Gossypioides kirkii chromosome KI_13
Parameters: 2 7 7 80 10 50 1000
Length:  42971368

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   

This is table  129  of  143  ( 17057 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37796445--37796590	67	2.2	67	92	0	238	43	4	0	51	1.25
37796506--37796711	49	4.2	49	98	0	385	44	7	0	48	1.30
37796183--37796807	326	1.9	325	95	0	1115	44	5	2	47	1.38
37796761--37796812	18	2.8	18	79	2	68	50	0	1	48	1.12
37796659--37796813	56	2.8	56	71	19	142	45	5	3	45	1.41
37799664--37799696	6	5.5	6	96	0	57	3	36	45	15	1.61
37801266--37801773	41	12.3	41	78	7	431	23	26	25	24	2.00
37810652--37810732	23	3.5	23	87	1	108	11	25	19	43	1.84
37810650--37810773	46	2.7	47	80	8	132	11	26	23	38	1.88
37810717--37810789	23	3.2	22	88	3	101	12	21	30	35	1.90
37810746--37810796	23	2.3	23	89	3	77	15	19	27	37	1.92
37812539--37812727	97	1.9	97	86	2	263	38	14	16	30	1.89
37812571--37812750	97	1.9	97	80	8	215	39	13	16	30	1.87
37812942--37813259	29	10.9	29	70	10	157	33	6	25	34	1.81
37812969--37813227	59	4.4	58	75	2	223	32	6	26	35	1.81
37812969--37813259	59	5.0	59	73	7	218	33	5	26	34	1.80
37813153--37813290	30	4.6	31	76	11	110	36	2	24	36	1.68
37813873--37813899	9	3.0	9	100	0	54	11	33	0	55	1.35
37814402--37814455	20	2.7	20	82	11	65	46	1	0	51	1.11
37814406--37814471	9	6.7	9	72	17	51	46	1	1	50	1.20
37815018--37815094	12	6.6	12	72	11	61	54	5	1	38	1.31
37815051--37815093	18	2.4	17	88	7	59	55	4	0	39	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37815020--37815121	46	2.2	46	86	6	136	54	6	0	37	1.34
37820024--37820097	23	3.2	23	90	0	103	14	27	14	43	1.85
37820090--37820166	23	3.4	22	82	10	84	12	25	25	35	1.92
37820584--37820825	60	4.1	58	78	7	263	34	15	19	30	1.93
37820584--37820825	118	2.0	119	83	5	303	34	15	19	30	1.93
37820598--37820854	118	2.2	118	82	6	297	35	15	21	28	1.93
37821482--37821938	60	7.5	59	79	10	449	40	13	17	28	1.87
37821895--37821985	46	2.0	45	80	2	101	47	13	14	25	1.80
37821943--37822138	60	3.3	58	81	7	225	37	16	17	28	1.92
37840883--37842058	366	3.2	365	89	2	1775	40	9	11	39	1.74
37842590--37842802	60	3.8	56	80	8	227	31	17	14	36	1.90
37842592--37842802	114	1.8	115	85	3	300	31	18	14	36	1.91
37851860--37852996	571	2.0	571	97	0	2166	33	14	12	39	1.83
37855002--37855070	28	2.6	28	76	19	76	47	0	1	50	1.09
37855005--37855048	21	2.0	21	83	12	54	47	0	0	52	1.00
37859232--37859262	15	2.1	15	100	0	62	29	12	12	45	1.80
37859333--37859381	16	2.8	17	84	12	55	42	0	0	57	0.99
37863537--37863595	26	2.3	25	83	13	75	42	15	3	38	1.63
37871544--37871614	31	2.4	29	88	4	97	39	4	0	56	1.19
37871542--37871612	11	6.5	11	73	15	58	39	4	0	56	1.19
37871591--37871625	17	2.1	17	88	0	52	45	2	0	51	1.16
37871664--37871726	28	2.3	27	89	5	99	47	25	12	14	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37873055--37873364	161	1.9	162	86	3	446	26	17	13	43	1.85
37873451--37873628	30	5.9	30	86	5	200	39	23	3	33	1.71
37873460--37873628	90	1.9	89	86	3	241	39	23	2	33	1.70
37896967--37897024	28	2.0	28	86	3	80	48	3	5	43	1.42
37898621--37898681	28	2.2	28	85	8	81	63	1	19	14	1.38
37898927--37898995	29	2.4	28	83	11	95	33	1	1	63	1.12
37898940--37899024	37	2.4	36	82	7	93	34	2	1	62	1.16
37899086--37899143	30	1.9	30	96	0	107	44	15	18	20	1.86
37915368--37915411	3	15.0	3	90	4	72	31	0	2	65	1.05
37915989--37916032	22	2.0	22	82	8	54	43	4	2	50	1.35
37917750--37917815	20	3.3	20	74	20	66	62	3	0	34	1.11
37917761--37917826	19	3.4	18	74	19	53	60	1	1	36	1.15
37917758--37917844	38	2.2	40	82	9	101	59	3	1	35	1.22
37919041--37919101	31	1.9	32	83	3	79	54	8	0	37	1.31
37919564--37919630	20	3.4	19	76	14	57	62	4	0	32	1.15
37919562--37919623	32	1.9	32	83	0	79	59	6	0	33	1.23
37928495--37928533	20	2.0	20	85	10	53	48	5	10	35	1.59
37931665--37931700	16	2.3	16	90	4	56	66	5	0	27	1.13
37931664--37931700	15	2.3	17	81	13	51	67	5	0	27	1.12
37934261--37934301	15	2.5	17	80	11	59	65	0	0	34	0.93
37940383--37940455	33	2.3	33	90	4	114	43	16	5	34	1.71
37950731--37950788	29	2.0	29	90	6	91	44	6	0	48	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37956948--37957119	23	7.5	22	86	5	141	39	25	23	11	1.88
37956948--37957050	45	2.3	45	85	6	136	36	28	21	13	1.91
37957039--37957138	23	4.3	23	93	0	164	42	23	26	9	1.83
37966904--37966941	15	2.5	15	91	0	58	26	5	39	28	1.78
37967187--37967223	19	1.9	19	94	0	65	16	0	16	67	1.23
37967310--37967362	13	3.9	13	73	9	52	69	0	30	0	0.88
37967333--37967370	20	1.9	20	88	0	58	60	0	36	2	1.11
37967484--37967531	16	3.1	16	71	17	55	31	4	6	58	1.42
37970747--37970792	21	2.2	21	92	0	74	26	17	34	21	1.95
37970785--37970873	45	2.0	45	93	0	151	22	22	23	31	1.98
37971117--37971148	15	2.1	16	88	11	50	18	28	28	25	1.98
37972758--37972803	23	2.0	23	95	0	83	56	10	8	23	1.61
37973762--37973839	23	3.3	22	71	20	59	65	10	0	24	1.23
37974031--37974085	24	2.2	24	87	9	76	1	36	0	61	1.06
37976625--37976676	18	3.0	18	81	10	56	51	0	1	46	1.12
37987658--37987690	2	16.5	2	100	0	66	48	0	0	51	1.00
37989563--37989588	7	3.7	7	100	0	52	88	0	11	0	0.52
37995767--37995793	3	9.0	3	100	0	54	66	0	0	33	0.92
38023734--38023779	22	2.1	21	84	4	56	34	2	2	60	1.21
38031465--38031565	50	2.0	53	80	9	120	46	0	5	47	1.27
38046114--38046548	178	2.5	177	92	3	725	33	3	28	33	1.76
38046442--38046540	28	3.4	29	69	21	73	33	2	33	31	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38046161--38046556	30	13.4	30	63	28	131	33	4	28	33	1.76
38046117--38046548	59	7.3	59	86	4	570	34	3	28	33	1.76
38046280--38046591	30	10.6	29	65	25	104	33	3	28	33	1.73
38047618--38047668	18	2.7	19	79	14	61	39	3	0	56	1.18
38047624--38047691	30	2.3	30	82	5	84	44	5	0	50	1.26
38048311--38048351	13	3.0	14	82	7	57	14	14	29	41	1.86
38048308--38048350	14	3.1	14	83	6	61	13	13	27	44	1.83
38048362--38048400	20	2.0	20	85	10	53	28	2	2	66	1.18
38048381--38048417	17	2.2	17	90	0	56	37	0	0	62	0.96
38052315--38052357	22	1.9	23	90	4	70	34	0	4	60	1.17
38052553--38052579	14	1.9	14	100	0	54	18	7	7	66	1.40
38053478--38053528	19	2.5	19	84	9	57	43	0	3	52	1.19
38053483--38053542	20	3.0	20	80	14	61	45	0	5	50	1.23
38056243--38056274	16	2.0	16	93	0	55	50	0	9	40	1.35
38062713--38062754	18	2.3	18	91	0	66	23	7	45	23	1.78
38062727--38062778	24	2.2	24	86	13	72	21	5	51	21	1.68
38071603--38071672	31	2.3	31	85	7	90	25	12	17	44	1.84
38072845--38072899	21	2.7	20	83	8	65	38	7	21	32	1.81
38080416--38080451	14	2.6	14	90	0	54	58	0	11	30	1.33
38081203--38081272	35	2.0	35	97	2	133	52	17	7	22	1.68
38081622--38081681	31	2.0	31	87	9	88	43	15	5	36	1.68
38087100--38087154	17	3.2	17	85	7	76	43	0	7	49	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38087099--38087156	11	5.2	11	78	15	57	41	0	6	51	1.28
38088860--38089228	29	12.6	28	78	11	341	39	24	2	34	1.68
38088860--38089224	88	4.1	89	81	10	391	39	24	2	34	1.67
38088889--38089256	59	6.3	57	81	7	400	38	24	2	33	1.71
38092040--38092134	17	5.8	17	68	16	56	46	2	2	49	1.25
38093502--38093692	23	8.5	23	69	16	114	42	21	24	12	1.86
38096483--38096787	30	10.2	30	80	4	314	37	21	4	36	1.74
38096483--38096799	60	5.3	59	82	5	377	36	22	4	36	1.74
38096482--38096807	120	2.7	119	88	3	458	36	22	4	36	1.74
38105722--38105764	13	3.4	13	77	6	52	72	4	0	23	1.04

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143