genome.fa.s11.2.7.7.80.10.50.1000.36.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032255.1 Gossypioides kirkii chromosome KI_13
Parameters: 2 7 7 80 10 50 1000
Length:  42971368

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   

This is table  36  of  143  ( 17057 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10926228--10926300	20	3.5	20	70	23	60	27	24	32	15	1.95
10958863--10958919	3	19.0	3	75	13	55	1	29	1	66	1.12
10958861--10958919	24	2.5	24	83	5	75	3	28	1	66	1.18
10958863--10958914	15	3.4	16	79	15	65	1	28	0	69	0.99
10966519--10966551	15	2.2	15	94	0	57	60	21	0	18	1.36
10973990--10974073	40	2.1	41	82	10	111	33	5	11	48	1.64
10974023--10974141	60	2.0	60	83	6	152	33	4	13	48	1.62
10975405--10975465	31	2.0	31	93	0	104	44	6	11	37	1.67
10983300--10983455	77	2.0	77	97	0	294	48	6	2	42	1.42
10983634--10983666	13	2.6	13	90	4	50	45	0	0	54	0.99
10996754--10996813	21	2.9	20	70	20	52	40	25	16	18	1.91
11011711--11011749	21	2.0	20	85	14	55	76	0	17	5	0.96
11021543--11021594	9	5.9	9	77	18	56	1	15	11	71	1.23
11021538--11021602	18	3.6	18	89	0	103	1	13	13	70	1.24
11023872--11024122	37	6.8	37	80	4	256	16	21	32	29	1.96
11023872--11024123	74	3.4	74	87	1	310	17	21	32	28	1.96
11024413--11024451	20	2.0	20	85	10	53	17	5	28	48	1.68
11031056--11031102	21	2.2	21	92	0	76	14	19	31	34	1.92
11031077--11031237	37	4.3	37	81	5	164	15	21	31	31	1.94
11031097--11031235	74	1.9	75	86	1	199	15	22	31	30	1.95
11031898--11032018	60	2.0	60	98	0	233	25	5	24	43	1.76
11037955--11037984	15	2.0	15	93	0	51	20	16	6	56	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11038172--11038235	14	4.8	13	73	16	51	45	6	0	48	1.27
11043366--11043408	24	1.9	22	86	13	61	53	4	13	27	1.60
11045129--11045176	24	2.0	24	84	4	62	62	25	2	10	1.38
11045950--11046158	113	1.8	113	87	0	310	34	24	21	19	1.96
11047484--11047526	17	2.5	17	81	7	52	16	2	4	76	1.05
11049413--11049494	42	2.0	42	100	0	164	29	14	34	21	1.93
11049613--11049684	32	2.4	30	80	13	76	45	11	4	38	1.59
11062396--11062477	24	3.4	24	87	0	119	25	28	24	21	1.99
11062463--11062539	27	2.8	27	92	2	118	35	22	18	24	1.96
11066099--11066232	24	5.6	24	83	0	160	26	23	26	23	2.00
11066226--11066313	27	3.3	27	86	0	122	34	20	18	27	1.96
11068970--11069003	17	2.1	16	88	5	50	17	5	2	73	1.16
11073405--11073446	21	2.0	22	85	4	59	64	4	19	11	1.44
11075289--11075322	17	2.1	16	94	5	59	17	5	0	76	0.98
11079941--11080003	32	2.0	32	93	0	108	31	11	19	38	1.86
11081038--11081073	14	2.6	14	95	4	65	63	5	11	19	1.46
11083159--11083198	21	1.9	21	89	0	62	62	0	32	5	1.17
11083186--11083272	11	7.7	11	67	19	54	71	1	22	4	1.11
11083210--11083265	29	2.0	28	82	10	69	67	1	26	3	1.16
11086497--11086559	32	2.0	32	87	0	90	33	9	15	41	1.80
11089338--11089372	13	2.8	12	87	8	52	65	8	0	25	1.21
11090999--11091525	137	3.9	136	89	4	764	41	7	5	45	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11096002--11096061	24	2.5	24	100	0	120	36	23	11	28	1.90
11096636--11096720	25	3.4	25	85	1	116	32	28	16	22	1.95
11105447--11105501	26	2.1	26	93	0	92	27	23	25	23	2.00
11105451--11105517	26	2.6	26	87	0	89	25	26	23	23	2.00
11120629--11120876	126	2.0	126	91	3	410	32	28	16	22	1.96
11121157--11121198	17	2.5	17	92	3	68	54	28	4	11	1.57
11121627--11121723	28	3.4	29	83	11	130	46	17	14	21	1.84
11121913--11122038	43	2.9	43	77	2	137	36	20	10	32	1.87
11128869--11128922	26	2.2	26	90	6	85	33	1	3	61	1.25
11128872--11128929	26	2.2	26	85	14	84	32	1	3	62	1.22
11131291--11131325	12	2.8	13	87	12	56	68	0	0	31	0.90
11132909--11132971	31	2.0	31	100	0	126	36	15	3	44	1.63
11134126--11134181	22	2.5	22	82	0	67	41	10	10	37	1.75
11149050--11149084	16	2.2	16	89	0	52	71	0	8	20	1.11
11151114--11151160	18	2.6	18	86	0	67	44	10	27	17	1.81
11156711--11156742	10	3.4	10	83	16	50	71	0	0	28	0.86
11159988--11160028	21	2.0	21	90	0	64	21	2	21	53	1.57
11159989--11160042	7	7.7	7	85	0	54	25	1	20	51	1.57
11160058--11160085	12	2.3	12	100	0	56	42	7	7	42	1.59
11160902--11160931	12	2.5	12	94	0	51	40	13	6	40	1.71
11161124--11161202	35	2.2	38	88	6	119	46	29	1	22	1.60
11161175--11161217	22	2.0	22	90	0	68	44	34	4	16	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11161150--11161214	7	9.1	7	73	9	51	44	33	1	20	1.61
11161216--11161346	26	5.0	26	82	5	147	55	12	0	31	1.42
11164121--11164169	20	2.5	20	86	6	64	30	14	8	46	1.73
11164206--11164273	27	2.5	27	97	0	127	20	35	22	22	1.96
11165133--11165298	35	4.7	35	88	1	251	35	26	15	22	1.94
11165133--11165298	71	2.4	70	89	1	251	35	26	15	22	1.94
11167919--11167964	2	23.0	2	100	0	92	50	0	0	50	1.00
11169760--11169937	43	4.2	43	89	1	277	21	30	20	26	1.98
11170220--11170272	21	2.5	21	87	0	70	1	47	16	33	1.58
11170268--11170414	66	2.2	66	91	1	242	16	24	16	42	1.87
11175900--11176748	112	7.7	108	86	6	987	48	4	2	45	1.36
11176001--11176393	18	21.6	18	67	13	101	47	4	2	45	1.36
11175899--11176088	12	15.7	12	67	19	74	50	3	1	44	1.29
11176316--11176389	10	7.7	10	69	18	50	50	5	0	44	1.25
11176266--11176708	113	4.0	112	90	3	646	47	4	2	45	1.36
11176452--11176496	18	2.4	19	82	14	58	46	2	2	48	1.26
11176565--11176602	18	2.1	18	85	9	51	42	0	5	52	1.24
11176566--11176636	14	5.6	12	76	17	54	43	2	2	50	1.31
11176661--11176749	8	10.0	9	68	17	53	57	2	0	40	1.11
11176619--11176750	62	2.1	61	83	8	160	54	2	0	42	1.18
11176661--11176750	18	5.6	18	70	22	74	56	2	0	41	1.11
11176672--11176771	26	3.7	26	78	16	96	54	2	0	44	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11176600--11176772	44	3.8	44	77	10	168	51	3	0	44	1.22
11175970--11176819	330	2.6	329	88	4	1121	47	4	2	45	1.38
11177038--11177087	18	2.8	18	81	0	73	50	2	0	48	1.12
11177074--11177588	76	7.2	76	73	17	478	48	5	1	44	1.34
11177220--11177595	135	2.8	135	95	0	664	48	5	1	44	1.34
11177549--11177606	8	7.2	8	74	14	57	58	1	0	39	1.08
11177489--11177689	94	2.1	94	96	0	366	52	4	0	41	1.30
11177519--11177684	32	5.3	31	73	18	105	52	4	1	41	1.30
11180205--11180230	13	2.0	13	100	0	52	15	7	23	53	1.67
11180370--11180402	16	2.1	17	88	11	52	30	6	0	63	1.18
11181503--11181702	41	4.9	42	84	5	239	25	27	20	27	1.99
11182312--11182544	36	6.5	36	88	1	344	36	29	13	20	1.91
11185568--11185771	35	5.9	35	84	5	254	36	30	10	21	1.88
11186195--11186227	17	1.9	17	100	0	66	51	18	6	24	1.68
11186396--11186559	35	4.7	35	87	0	211	38	29	10	21	1.87
11187155--11187210	20	2.6	22	83	5	71	66	28	3	1	1.19
11187176--11187222	12	4.1	12	76	20	55	68	29	0	2	1.02
11189884--11189930	20	2.3	20	85	0	67	36	21	31	10	1.88
11189884--11189940	20	2.9	21	79	10	66	38	19	31	10	1.86
11192472--11192614	60	2.4	57	80	8	162	51	11	10	26	1.69
11192604--11192644	19	2.1	19	90	9	64	68	0	0	31	0.90
11195945--11196164	108	2.0	108	86	0	305	35	18	19	26	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11196135--11196197	34	1.9	32	87	6	90	38	20	17	23	1.93
11197674--11197726	18	2.8	18	78	15	63	49	1	1	47	1.23
11198800--11198845	21	2.0	21	84	12	56	52	2	6	39	1.40
11200617--11200657	21	2.0	21	90	0	64	53	14	12	19	1.72
11201626--11201715	20	4.6	20	75	6	76	31	7	14	46	1.73
11208089--11208113	13	1.9	13	100	0	50	24	16	12	48	1.79
11223734--11223776	19	2.3	19	84	8	52	58	4	0	37	1.19
11225754--11225841	45	2.0	45	97	0	167	28	26	15	29	1.96
11228960--11229002	19	2.3	19	84	8	52	58	4	0	37	1.19
11233544--11233585	18	2.3	18	80	8	50	14	19	30	35	1.91

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143