genome.fa.s11.2.7.7.80.10.50.1000.34.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032255.1 Gossypioides kirkii chromosome KI_13
Parameters: 2 7 7 80 10 50 1000
Length:  42971368

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   

This is table  34  of  143  ( 17057 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10092151--10092270	50	2.4	50	81	5	136	33	19	23	24	1.97
10092296--10092425	39	3.3	40	74	8	133	34	21	14	29	1.93
10092987--10093011	4	6.2	4	100	0	50	24	0	0	76	0.80
10093920--10093984	30	2.2	29	88	2	94	41	18	1	38	1.60
10093963--10094162	30	6.6	30	75	7	138	40	18	4	37	1.71
10093948--10094138	90	2.1	91	80	6	228	40	17	4	37	1.69
10093968--10094177	60	3.5	59	77	7	183	39	17	5	38	1.72
10098878--10098908	15	2.1	15	100	0	62	45	12	6	35	1.68
10102518--10102551	17	2.0	17	94	0	59	52	14	17	14	1.74
10103607--10103662	21	2.7	21	88	0	76	37	26	10	25	1.88
10104345--10104528	53	3.5	53	84	0	235	35	20	15	28	1.93
10114281--10114498	116	1.9	116	94	1	384	34	22	17	24	1.96
10121912--10122578	334	2.0	333	96	0	1228	35	19	22	22	1.96
10123291--10123334	22	2.0	22	90	0	70	40	11	15	31	1.83
10130521--10130644	43	2.9	44	88	9	177	37	8	18	35	1.82
10131920--10131946	13	2.1	13	100	0	54	22	18	37	22	1.95
10137193--10137576	188	2.0	191	86	2	542	44	6	11	37	1.67
10137992--10138022	15	2.1	15	100	0	62	32	19	0	48	1.49
10138584--10138730	73	2.0	73	93	0	249	38	17	19	25	1.93
10141236--10141260	13	1.9	13	100	0	50	48	12	16	24	1.79
10144794--10144818	13	1.9	13	100	0	50	48	12	16	24	1.79
10145968--10146367	200	2.0	199	97	0	746	30	11	23	34	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10152976--10153023	25	2.0	24	84	12	62	47	6	20	25	1.73
10155985--10156023	21	1.9	21	89	5	62	12	12	7	66	1.43
10172446--10172728	30	9.5	30	85	4	331	37	3	23	35	1.72
10174600--10174671	37	1.9	37	82	0	90	26	20	18	34	1.95
10174552--10174728	85	2.1	85	82	3	212	22	20	17	39	1.92
10174432--10174929	208	2.4	208	87	4	695	23	21	16	38	1.93
10174751--10174977	48	5.0	47	76	13	188	23	23	15	37	1.93
10174760--10174926	85	2.0	85	83	4	212	25	22	15	36	1.94
10174647--10175185	256	2.1	256	89	1	821	23	21	16	38	1.93
10175214--10175308	48	2.0	48	87	0	136	23	18	14	43	1.87
10174901--10175298	208	1.9	208	85	4	552	23	21	16	39	1.92
10175102--10175427	122	2.7	124	83	3	419	23	18	16	40	1.91
10176509--10176589	41	2.0	41	85	2	108	13	23	18	44	1.85
10183616--10183878	30	8.8	30	83	4	264	36	3	24	35	1.72
10183616--10183898	89	3.2	89	82	3	300	36	3	24	35	1.73
10183596--10183907	60	5.2	60	77	4	265	36	3	24	36	1.71
10185129--10185188	26	2.3	27	85	5	79	26	21	16	35	1.95
10186493--10186538	16	2.8	17	78	18	60	47	15	23	13	1.80
10190379--10190410	16	2.0	16	93	0	55	18	21	0	59	1.38
10193642--10193666	13	1.9	13	100	0	50	24	16	12	48	1.79
10194136--10194167	16	2.0	16	93	0	55	18	21	0	59	1.38
10197295--10197319	10	2.5	10	100	0	50	72	0	0	28	0.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10200764--10200800	12	3.0	12	88	4	56	21	2	8	67	1.29
10209249--10209295	6	7.7	6	77	13	51	2	21	0	76	0.89
10209253--10209295	16	2.9	14	80	16	50	2	20	0	76	0.89
10219679--10219741	20	3.2	20	69	0	63	46	12	12	28	1.79
10223869--10223924	24	2.3	24	93	0	94	5	19	5	69	1.28
10225584--10225627	17	2.6	17	81	0	52	11	9	0	79	0.93
10225593--10225629	19	1.9	19	89	10	58	10	13	0	75	1.04
10231564--10232079	188	2.8	188	93	0	863	36	15	6	42	1.71
10245075--10245123	17	2.8	18	78	12	57	57	8	14	20	1.63
10250113--10250162	25	2.0	25	100	0	100	20	20	12	48	1.80
10254951--10255329	185	2.0	187	88	4	568	43	6	12	36	1.69
10270374--10270415	18	2.3	18	84	8	50	21	19	23	35	1.96
10272023--10272069	24	2.0	24	83	8	60	51	6	14	27	1.67
10273623--10273679	20	2.8	20	79	10	62	28	17	12	42	1.85
10273647--10273688	20	2.1	20	86	0	57	21	14	19	45	1.85
10274514--10274540	13	2.1	13	100	0	54	14	7	0	77	0.97
10274660--10274705	23	2.0	23	86	0	65	65	2	4	28	1.23
10275264--10275339	30	2.6	28	84	10	98	39	30	0	30	1.57
10282051--10282661	39	15.9	38	71	12	318	22	28	22	26	1.99
10282052--10282313	77	3.4	78	83	2	305	23	28	21	26	1.99
10282249--10282620	78	4.8	78	84	2	432	22	28	22	26	1.99
10282091--10282508	194	2.1	194	82	3	518	23	29	22	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10282176--10282620	117	3.9	116	76	8	356	22	28	22	26	1.99
10284541--10284833	29	10.0	29	78	9	222	37	25	1	34	1.67
10294782--10296126	684	2.0	675	86	3	1871	32	12	12	42	1.80
10297730--10297769	14	2.9	14	80	0	53	7	27	0	65	1.20
10301332--10301379	16	2.9	16	84	6	60	75	2	20	2	1.02
10309256--10309298	20	2.2	20	83	8	52	9	9	4	76	1.14
10309256--10309311	28	2.0	28	96	0	103	10	8	3	76	1.12
10309262--10309311	20	2.5	19	81	12	55	12	8	2	78	1.05
10326029--10326058	14	2.2	14	94	5	53	30	23	10	36	1.87
10341176--10341219	15	3.0	15	90	6	72	40	25	0	34	1.56
10341176--10341219	7	6.0	7	89	5	61	40	25	0	34	1.56
10341177--10341219	22	2.0	22	86	9	61	41	25	0	32	1.56
10355683--10355723	16	2.5	16	92	4	64	85	0	12	2	0.70
10355683--10355728	17	2.7	17	86	10	67	80	0	15	4	0.86
10355711--10355772	31	2.1	31	85	11	85	59	9	16	14	1.60
10390957--10390989	17	1.9	17	88	11	50	66	0	33	0	0.92
10391931--10391978	19	2.4	20	86	6	62	14	8	12	64	1.49
10395570--10395599	15	1.9	16	93	6	53	23	6	23	46	1.75
10396216--10396251	15	2.4	15	95	0	63	86	0	13	0	0.58
10396215--10396252	8	4.9	8	87	6	60	86	0	13	0	0.56
10403271--10403310	17	2.3	18	80	20	50	45	15	22	17	1.85
10411292--10411328	17	2.1	19	85	10	51	64	8	13	13	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10436662--10436759	49	2.0	50	91	2	162	47	8	15	28	1.73
10438612--10438674	25	2.5	26	86	2	83	22	19	26	31	1.97
10439539--10439571	17	1.9	17	88	11	50	30	0	15	54	1.41
10445083--10445135	22	2.3	23	78	9	56	54	1	5	37	1.35
10445862--10445936	38	1.9	38	83	2	96	41	14	13	30	1.84
10445910--10445945	17	2.1	17	90	10	56	55	16	0	27	1.42
10449331--10449391	29	2.1	29	93	0	104	34	8	13	44	1.73
10450132--10450196	27	2.4	27	84	0	85	12	16	38	32	1.86
10459183--10459263	33	2.5	33	89	0	126	7	23	1	67	1.23
10459195--10459248	17	3.2	17	71	5	56	9	16	0	74	1.07
10459183--10459275	33	2.8	31	81	12	105	6	23	1	68	1.19
10466864--10467305	41	10.8	41	88	4	588	16	32	21	29	1.95
10466871--10467305	124	3.5	123	85	4	592	16	31	21	29	1.96
10466871--10467312	165	2.7	164	86	4	606	16	31	22	29	1.96
10471183--10471344	75	2.1	76	85	6	220	41	2	14	41	1.59
10471453--10471560	39	2.7	38	82	7	108	40	22	19	17	1.91
10471492--10471628	41	3.4	41	78	7	136	45	16	21	17	1.86
10472594--10472624	3	10.0	3	93	6	53	32	0	0	67	0.91
10472934--10473027	40	2.3	40	88	0	134	40	19	19	21	1.92
10474173--10474214	17	2.4	17	88	4	57	21	28	2	47	1.63
10474153--10474200	24	2.0	24	83	0	60	18	35	2	43	1.62
10478690--10478734	15	2.9	15	83	3	54	51	4	20	24	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10479528--10479570	17	2.5	17	88	3	59	20	27	2	48	1.62
10481242--10481393	58	3.0	48	78	17	187	49	7	0	42	1.35
10481253--10481369	58	2.0	58	93	3	200	47	5	0	45	1.33
10481359--10481414	26	2.2	26	100	0	112	51	14	0	33	1.42
10481637--10481669	6	5.5	6	100	0	66	54	15	0	30	1.41
10493187--10493226	18	2.2	19	86	13	57	52	7	32	7	1.58
10493486--10493525	21	1.9	21	85	10	55	67	5	27	0	1.11
10493603--10493646	18	2.5	18	88	3	63	15	11	13	59	1.62
10494239--10494271	17	1.9	17	93	0	57	75	3	21	0	0.93
10494229--10494282	22	2.4	22	81	12	65	77	3	18	0	0.91

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143