genome.fa.s11.2.7.7.80.10.50.1000.102.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032255.1 Gossypioides kirkii chromosome KI_13
Parameters: 2 7 7 80 10 50 1000
Length:  42971368

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   

This is table  102  of  143  ( 17057 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31378339--31378551	117	1.8	117	87	4	322	24	19	31	23	1.98
31378811--31378974	49	3.3	49	86	1	168	15	27	17	39	1.90
31378928--31379116	51	3.7	51	79	6	188	11	25	22	40	1.87
31378928--31379116	101	1.9	100	81	8	231	11	25	22	40	1.87
31385511--31385937	58	7.3	58	79	10	324	35	6	24	34	1.80
31385569--31385937	117	3.2	114	82	6	420	34	6	24	34	1.80
31385655--31385932	29	9.4	30	70	16	163	33	5	24	35	1.79
31386665--31386798	70	1.9	68	86	3	187	33	10	11	44	1.76
31387632--31387689	20	3.0	19	75	10	55	27	5	15	51	1.64
31387685--31387771	6	15.2	6	70	16	60	49	3	1	45	1.26
31387705--31387782	17	4.6	17	86	0	102	55	3	1	39	1.26
31388269--31388490	113	2.0	113	84	2	293	42	18	12	26	1.86
31389264--31389315	22	2.4	22	77	3	61	13	9	5	71	1.30
31390624--31391093	98	4.8	97	86	3	618	18	25	17	38	1.92
31390634--31391093	196	2.3	196	89	0	697	18	25	17	38	1.93
31390606--31391085	49	9.8	49	70	3	302	18	24	18	38	1.93
31398489--31398532	23	1.9	23	81	9	54	40	11	25	22	1.87
31401799--31402119	112	2.8	113	92	2	520	41	20	12	25	1.87
31402903--31402954	22	2.4	22	77	3	61	13	11	5	69	1.35
31410507--31410865	193	1.9	194	87	1	533	27	25	18	29	1.98
31414591--31414638	21	2.3	21	85	0	60	33	22	12	31	1.91
31421316--31421353	15	2.5	15	91	8	60	31	0	0	68	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31421316--31421361	16	3.0	15	84	9	58	32	0	0	67	0.91
31421740--31421768	10	2.9	10	100	0	58	68	0	31	0	0.89
31429597--31429651	11	5.0	11	78	12	51	41	0	32	25	1.56
31429587--31429651	22	3.0	22	76	12	64	41	0	32	26	1.56
31433447--31433510	24	2.6	23	82	2	65	51	10	12	25	1.72
31450581--31450629	20	2.5	19	87	12	73	59	2	4	34	1.28
31455707--31455765	30	2.0	30	96	0	109	18	25	0	55	1.42
31459681--31459705	13	1.9	13	100	0	50	12	0	16	72	1.13
31462875--31462943	34	2.0	34	94	0	120	40	13	17	28	1.87
31463056--31463130	10	7.8	9	77	14	69	26	0	9	64	1.24
31463056--31463141	10	8.9	9	74	14	64	30	0	8	61	1.25
31463085--31463141	19	3.0	19	74	5	53	33	0	5	61	1.18
31468602--31468648	25	1.9	24	95	4	85	38	0	2	59	1.09
31474723--31474749	13	2.1	13	100	0	54	33	0	0	66	0.92
31478165--31478233	33	2.1	33	97	0	129	20	14	23	42	1.89
31484690--31484751	20	3.3	19	76	14	58	64	1	1	32	1.13
31484724--31484760	17	2.2	17	86	13	51	62	0	2	35	1.10
31485035--31485069	17	2.1	16	89	5	52	62	0	0	37	0.95
31485964--31486012	10	4.8	10	76	2	53	36	4	0	59	1.17
31485970--31486012	20	2.1	20	86	4	59	32	4	0	62	1.15
31485953--31486012	22	2.8	21	78	12	52	36	5	0	58	1.20
31487884--31487931	20	2.5	19	77	9	53	39	0	4	56	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31487889--31487927	20	2.0	20	89	0	60	35	0	5	58	1.20
31488706--31488738	17	2.0	17	88	5	50	57	0	3	39	1.14
31489486--31489530	19	2.5	18	80	19	58	60	2	0	37	1.09
31497660--31497697	16	2.5	15	84	12	51	34	0	2	63	1.09
31500425--31500476	26	2.0	26	84	0	68	32	0	7	59	1.26
31500621--31500782	7	22.6	7	72	13	100	27	0	26	45	1.58
31500613--31500675	22	2.9	22	74	9	56	26	1	22	49	1.59
31500641--31500781	29	4.9	29	71	11	110	26	0	28	45	1.54
31501799--31501895	43	2.3	43	90	0	149	43	13	12	30	1.81
31503363--31503399	17	2.2	17	86	13	51	62	0	2	35	1.10
31506528--31506575	20	2.5	19	77	9	53	39	0	4	56	1.19
31506533--31506571	20	2.0	20	89	0	60	35	0	5	58	1.20
31507357--31507389	17	1.9	17	100	0	66	48	0	3	48	1.17
31508621--31508666	6	8.2	6	79	13	53	45	0	2	52	1.13
31508606--31508657	23	2.3	23	74	16	54	36	0	3	59	1.16
31508612--31508666	16	3.4	16	85	5	74	41	0	3	54	1.18
31508617--31508688	33	2.2	33	82	0	81	43	2	4	50	1.36
31509498--31509533	6	5.8	6	90	6	54	52	2	0	44	1.15
31509855--31509902	21	2.3	21	85	7	71	75	4	12	8	1.18
31510580--31510945	60	6.1	60	86	2	443	36	24	3	35	1.73
31510580--31510908	30	10.9	30	88	0	433	36	23	3	35	1.73
31510580--31510945	30	12.2	29	85	4	333	36	24	3	35	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31510580--31510945	90	4.1	88	85	5	466	36	24	3	35	1.73
31521084--31521745	68	9.6	68	88	3	964	34	16	19	29	1.94
31521084--31521745	205	3.2	205	89	3	979	34	16	19	29	1.94
31521084--31521745	273	2.4	279	90	2	1050	34	16	19	29	1.94
31522081--31522114	17	2.0	17	88	0	50	35	0	11	52	1.38
31522102--31522164	17	3.8	16	79	6	63	42	0	4	52	1.22
31522104--31522186	33	2.5	33	82	2	94	40	2	6	50	1.40
31522990--31523031	22	1.9	22	85	0	57	59	2	0	38	1.10
31523349--31523396	21	2.3	21	85	7	71	75	4	12	8	1.18
31524078--31524342	30	8.8	30	86	0	341	36	22	3	36	1.72
31524078--31524342	90	2.9	90	87	0	377	36	22	3	36	1.72
31524098--31524388	90	3.3	87	83	5	327	35	24	3	37	1.73
31535916--31536090	51	3.4	50	81	4	201	32	21	12	34	1.90
31542318--31542401	7	11.6	7	75	12	71	25	1	26	47	1.59
31542318--31542393	15	5.1	15	73	17	61	25	1	25	48	1.59
31542318--31542409	22	4.2	21	81	9	96	26	1	27	45	1.60
31542318--31542403	44	2.0	44	88	4	129	25	1	26	46	1.60
31542333--31542459	7	17.7	7	70	16	52	26	1	28	43	1.64
31542976--31543010	6	5.8	6	96	0	61	0	48	2	48	1.16
31542977--31543034	18	3.2	18	85	0	62	0	41	15	43	1.47
31543001--31543040	6	6.7	6	94	0	62	2	35	25	37	1.69
31543494--31543590	43	2.3	43	90	0	149	44	12	9	34	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31545337--31545376	21	1.9	21	89	0	62	52	12	2	32	1.52
31545430--31545485	25	2.2	27	78	18	75	73	7	0	19	1.06
31546521--31546567	20	2.5	19	80	10	60	42	0	2	55	1.12
31546518--31546580	20	3.0	21	75	13	58	41	0	3	55	1.16
31546526--31546564	20	2.0	20	94	0	69	38	0	2	58	1.12
31548932--31548983	2	26.0	2	100	0	104	0	50	0	50	1.00
31550839--31550894	2	28.0	2	100	0	112	50	0	0	50	1.00
31555704--31555731	5	5.6	5	100	0	56	17	0	0	82	0.68
31561844--31561904	32	1.9	32	89	0	95	49	0	1	49	1.10
31561865--31561907	23	1.9	22	86	13	61	51	0	2	46	1.13
31574503--31574552	24	2.1	23	82	10	57	34	6	4	56	1.43
31574526--31574690	58	2.8	59	81	10	203	44	1	3	51	1.24
31574860--31574905	16	2.9	16	87	6	58	26	21	8	43	1.81
31586268--31586299	16	1.9	17	93	6	57	34	0	3	62	1.11
31586440--31586526	41	2.1	40	81	8	95	54	5	12	27	1.61
31588153--31588204	9	5.6	9	75	8	50	55	0	1	42	1.10
31588151--31588190	20	2.0	20	90	0	62	57	0	2	40	1.12
31589625--31589651	12	2.2	12	100	0	54	40	0	0	59	0.98
31593868--31593903	16	2.2	16	95	0	63	30	44	5	19	1.73
31594042--31594211	93	1.8	93	85	2	243	35	8	17	38	1.79
31594042--31594230	93	2.0	92	81	6	220	34	7	16	40	1.78
31604187--31604216	15	2.0	15	100	0	60	26	13	26	33	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31608640--31608666	6	4.5	6	100	0	54	51	0	0	48	1.00
31614272--31614325	28	1.9	28	88	0	81	57	1	1	38	1.20
31615475--31615822	29	11.9	29	73	15	152	36	24	3	36	1.71
31615687--31615831	57	2.5	57	80	9	136	38	24	2	34	1.67
31615752--31615850	28	3.5	28	81	10	85	40	22	0	37	1.54
31615752--31615851	29	3.5	30	80	9	93	40	22	0	38	1.54
31616126--31616159	17	2.0	17	94	0	59	17	5	14	61	1.52
31616143--31616317	97	1.8	97	84	1	244	28	17	13	40	1.88
31620688--31620741	21	2.5	22	80	13	60	75	0	9	14	1.03
31620711--31620801	7	12.6	7	78	12	69	79	0	16	4	0.89

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143