genome.fa.s11.2.7.7.80.10.50.1000.116.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032255.1 Gossypioides kirkii chromosome KI_13
Parameters: 2 7 7 80 10 50 1000
Length:  42971368

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   

This is table  116  of  143  ( 17057 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35352010--35352620	76	8.0	76	90	2	906	34	15	18	31	1.92
35352108--35352615	38	13.4	36	66	19	171	35	14	18	31	1.91
35353740--35353777	16	2.4	16	86	8	51	47	0	2	50	1.15
35353737--35353775	19	2.0	20	90	5	62	46	0	2	51	1.14
35354726--35355568	59	14.4	58	84	4	966	33	28	2	35	1.72
35354726--35355568	117	7.2	116	83	4	955	33	28	2	35	1.72
35354726--35355568	176	4.8	177	84	4	1030	33	28	2	35	1.72
35355199--35355557	29	12.3	30	65	19	91	32	27	3	35	1.75
35355548--35355609	28	2.2	29	78	18	69	38	29	6	25	1.81
35358563--35358599	2	18.5	2	94	0	65	45	0	2	51	1.15
35359416--35359474	26	2.2	26	78	3	64	20	15	40	23	1.90
35359588--35359622	6	6.0	6	86	6	54	54	0	0	45	0.99
35359590--35359622	11	2.8	12	90	4	50	57	0	0	42	0.98
35359596--35359681	17	5.1	17	75	2	84	54	4	3	37	1.38
35360247--35360406	78	2.1	77	81	5	180	26	16	30	26	1.97
35360479--35360834	92	3.9	92	96	0	626	31	17	17	33	1.93
35360954--35361299	50	7.0	49	81	2	381	10	23	26	39	1.86
35366571--35366845	147	1.9	146	86	3	392	42	8	20	28	1.80
35366571--35366884	147	2.1	146	84	4	391	41	7	21	29	1.80
35366842--35367149	29	10.5	29	77	11	267	36	1	23	38	1.65
35366871--35367162	59	4.9	59	81	7	303	36	1	22	39	1.62
35369091--35369217	6	21.5	6	69	8	82	51	3	3	42	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35369091--35369156	17	3.8	17	90	6	96	53	3	3	40	1.32
35369075--35369156	35	2.3	36	81	10	98	51	2	2	43	1.28
35369106--35369191	41	2.1	41	88	0	127	53	0	4	41	1.21
35369172--35369217	23	2.0	23	83	12	58	50	4	2	43	1.34
35369106--35369217	41	2.7	41	83	1	116	51	1	3	42	1.29
35371749--35371855	17	6.3	17	77	7	101	36	1	5	56	1.34
35371798--35371856	11	5.3	11	71	4	55	37	0	5	57	1.21
35371777--35371855	6	13.8	6	74	10	58	37	1	3	56	1.25
35371794--35371854	23	2.7	23	85	7	81	36	0	4	59	1.19
35371816--35371873	28	2.1	28	83	6	73	39	0	6	53	1.28
35373136--35373193	30	1.9	30	82	6	73	36	1	41	20	1.63
35373721--35373921	29	6.9	27	65	21	86	32	29	3	34	1.76
35373721--35373803	29	2.9	29	75	10	89	33	27	2	36	1.70
35373719--35374068	59	5.9	59	85	5	422	32	28	3	35	1.74
35373784--35373992	29	7.1	28	65	23	92	33	29	4	33	1.77
35373784--35374052	30	9.1	28	66	15	123	33	28	3	34	1.75
35373719--35374072	118	3.0	119	85	4	477	32	28	3	35	1.75
35386283--35386918	199	3.2	200	91	1	1008	35	21	23	19	1.96
35387255--35387361	17	6.3	17	77	7	101	36	1	5	56	1.34
35387304--35387362	11	5.3	11	71	4	55	37	0	5	57	1.21
35387283--35387361	6	13.8	6	74	10	58	37	1	3	56	1.25
35387300--35387360	23	2.7	23	85	7	81	36	0	4	59	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35387322--35387379	28	2.1	28	83	6	73	39	0	6	53	1.28
35388069--35388112	16	2.7	16	82	13	54	52	0	0	47	1.00
35388423--35388457	18	1.9	18	94	0	61	40	17	17	25	1.90
35389232--35389664	59	7.3	59	85	2	541	33	29	3	34	1.73
35389232--35389664	177	2.5	177	86	4	599	33	29	3	34	1.73
35389232--35389663	30	14.7	29	66	23	158	33	29	3	34	1.73
35395020--35395080	26	2.3	27	82	2	70	18	16	39	26	1.91
35395196--35395281	17	5.1	17	78	2	93	54	3	3	38	1.34
35397128--35397184	29	1.9	29	89	3	87	54	10	1	33	1.45
35402234--35402343	55	2.0	55	94	3	195	36	11	7	44	1.69
35406907--35406953	21	2.2	21	78	14	53	40	4	8	46	1.54
35411165--35411206	4	10.5	4	80	10	50	26	0	2	71	0.98
35411165--35411206	16	2.6	16	88	7	59	26	0	2	71	0.98
35411205--35411229	11	2.3	11	100	0	50	72	0	0	28	0.86
35411763--35411906	39	3.6	39	75	7	146	25	16	25	32	1.96
35411963--35412187	99	2.3	100	88	0	335	18	24	18	39	1.92
35411962--35412187	50	4.6	49	81	3	238	18	24	18	39	1.92
35420303--35420341	8	4.8	8	96	3	69	41	12	23	23	1.88
35423008--35423043	18	2.1	18	90	10	58	66	16	0	16	1.25
35424937--35424978	16	2.6	16	81	7	50	23	2	2	71	1.10
35428380--35428445	14	4.4	15	72	12	55	46	3	3	46	1.33
35433007--35433197	23	8.5	23	69	16	105	41	20	25	12	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35433100--35433197	23	4.2	23	81	10	126	38	22	25	13	1.90
35434220--35434285	33	1.9	36	84	9	93	9	31	6	53	1.57
35436132--35436182	23	2.4	22	75	12	52	39	1	5	52	1.37
35436789--35436852	11	5.7	11	78	10	58	40	1	0	57	1.08
35436800--35436852	12	4.6	12	83	6	74	37	1	0	60	1.08
35438132--35438174	18	2.3	19	80	4	52	60	2	32	4	1.30
35441665--35441827	23	7.3	23	74	14	153	42	22	23	11	1.86
35441671--35441745	39	1.9	39	91	0	123	44	21	22	12	1.85
35441710--35441827	48	2.5	46	88	8	175	40	22	24	11	1.88
35448100--35448262	23	7.3	23	74	14	153	42	22	23	11	1.86
35448106--35448180	39	1.9	39	91	0	123	44	21	22	12	1.85
35448145--35448262	48	2.5	46	88	8	175	40	22	24	11	1.88
35452266--35452543	92	3.0	92	93	0	475	32	14	18	34	1.91
35452721--35452787	22	3.0	22	79	10	64	38	1	2	56	1.24
35452722--35452795	23	3.3	23	84	1	87	40	1	2	55	1.22
35452734--35452794	6	10.7	6	84	10	74	42	0	1	55	1.09
35452734--35452812	17	4.7	16	86	12	97	43	0	1	55	1.07
35453221--35453315	44	2.2	44	92	1	156	45	18	8	27	1.78
35453625--35453666	21	2.0	20	90	4	66	54	0	0	45	0.99
35453624--35453672	12	4.1	12	74	10	55	55	0	0	44	0.99
35453728--35453770	21	2.3	19	84	15	54	60	0	0	39	0.97
35454905--35455088	30	6.1	30	75	13	137	34	26	4	34	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35454904--35455095	90	2.1	90	81	11	216	34	26	4	33	1.77
35454950--35455092	60	2.4	59	81	9	164	35	25	3	34	1.73
35455124--35455346	117	1.9	117	86	3	315	29	25	7	37	1.84
35457196--35457674	161	3.0	161	88	1	699	33	13	15	37	1.87
35459745--35459801	29	2.0	29	82	0	69	36	7	24	31	1.82
35459855--35459971	28	4.1	28	81	7	155	29	2	29	37	1.71
35459855--35459993	57	2.4	58	81	8	167	32	3	28	35	1.75
35459811--35459997	29	6.6	28	77	4	160	32	3	27	36	1.75
35466847--35466881	18	1.9	18	88	11	54	34	5	11	48	1.63
35467524--35467555	16	2.0	16	100	0	64	18	50	12	18	1.78
35468503--35468553	24	2.1	24	85	0	66	27	11	7	52	1.65
35483570--35483636	21	3.2	21	68	19	68	55	8	17	17	1.67
35483552--35483636	41	2.1	41	100	0	170	54	9	18	17	1.70
35483564--35483628	20	3.2	20	66	12	60	53	10	16	18	1.71
35484227--35484251	6	4.2	6	100	0	50	52	0	32	16	1.44
35485811--35485854	21	2.1	21	86	0	61	9	2	13	75	1.14
35485804--35485865	32	1.9	32	84	12	83	11	4	14	69	1.34
35495117--35495143	7	3.9	7	100	0	54	14	29	40	14	1.86
35496815--35496900	6	15.0	6	72	13	74	47	1	3	47	1.26
35496818--35496882	16	4.0	15	80	11	67	52	1	3	43	1.26
35496871--35496905	18	1.9	18	94	0	61	42	0	2	54	1.15
35497080--35497104	13	1.9	13	100	0	50	24	40	24	12	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35515672--35515701	9	3.3	9	90	0	51	56	0	0	43	0.99
35516812--35516949	30	4.7	30	73	14	126	35	22	5	36	1.78
35516782--35516996	29	7.5	29	73	13	153	36	23	4	35	1.75
35516768--35517008	59	4.2	58	71	12	176	34	24	4	35	1.76
35516991--35517070	29	2.8	27	77	17	81	27	23	10	38	1.87
35517018--35517100	29	2.9	29	71	20	82	26	21	9	42	1.84
35516991--35517100	58	1.9	57	84	1	148	26	23	10	40	1.86
35524042--35524337	50	5.9	49	72	10	183	40	20	25	13	1.89
35524034--35524351	150	2.1	150	88	0	465	40	18	26	14	1.89
35524183--35524386	100	2.0	101	80	2	232	38	18	26	16	1.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143