genome.fa.s11.2.7.7.80.10.50.1000.23.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032255.1 Gossypioides kirkii chromosome KI_13
Parameters: 2 7 7 80 10 50 1000
Length:  42971368

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   

This is table  23  of  143  ( 17057 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6837520--6837572	17	3.1	17	83	8	54	60	0	1	37	1.08
6837534--6837585	16	3.1	18	82	17	60	65	0	0	34	0.93
6841820--6841852	16	2.0	17	88	5	50	57	0	0	42	0.98
6843689--6843741	25	2.1	26	92	3	90	22	16	35	24	1.95
6846401--6846555	79	2.0	79	96	0	283	32	21	13	31	1.92
6852105--6852157	24	2.3	22	83	6	70	35	1	0	62	1.06
6854975--6855066	45	2.0	45	95	0	166	32	6	22	38	1.80
6857156--6857202	4	11.8	4	100	0	94	48	25	0	25	1.51
6867934--6867971	5	7.6	5	100	0	76	0	18	0	81	0.69
6878250--6878308	10	6.2	9	77	16	57	59	0	5	35	1.20
6879401--6879445	23	2.0	22	87	12	65	26	0	2	71	0.98
6881069--6881123	21	2.5	22	85	8	69	58	1	5	34	1.32
6881277--6881328	14	3.4	14	74	25	52	38	5	0	55	1.24
6883490--6883534	21	2.1	21	84	8	56	28	0	2	68	1.01
6886814--6886865	22	2.4	21	75	9	50	15	23	15	46	1.83
6891668--6891737	36	2.0	33	83	8	86	21	8	11	58	1.59
6902535--6902571	2	19.0	2	94	5	67	48	0	0	51	1.00
6905807--6905848	14	2.9	14	82	10	50	28	9	0	61	1.27
6906061--6906135	37	2.0	37	94	0	132	30	9	6	53	1.59
6906560--6906598	21	1.9	20	89	5	60	51	0	2	46	1.14
6910955--6911175	72	3.1	72	89	0	325	29	18	27	24	1.98
6911274--6911409	39	3.5	39	87	0	191	39	22	16	21	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6916192--6916227	16	2.2	17	90	5	56	50	0	8	41	1.33
6918117--6918156	21	2.0	20	90	5	62	67	5	5	22	1.30
6923338--6923384	14	3.5	14	88	5	71	57	4	10	27	1.51
6926972--6927185	39	5.5	39	85	2	142	24	17	20	37	1.93
6926949--6927185	78	3.0	78	79	0	240	24	18	20	37	1.94
6927438--6927703	128	2.1	128	85	2	356	25	28	23	22	1.99
6927479--6927709	128	1.8	128	91	0	381	25	27	22	24	2.00
6935093--6935153	28	2.2	28	93	0	104	50	8	4	36	1.54
6935323--6935360	2	19.0	2	100	0	76	50	0	0	50	1.00
6940876--6940923	25	2.0	24	84	11	64	79	10	4	6	1.05
6941114--6941182	27	2.6	27	77	9	70	69	2	7	20	1.25
6944757--6944805	17	2.9	16	78	6	53	61	12	0	26	1.31
6944836--6944868	12	2.6	13	85	9	50	63	6	9	21	1.45
6947894--6947935	21	2.0	22	85	4	59	35	16	16	30	1.92
6949849--6950066	40	5.4	40	84	5	235	29	16	16	37	1.91
6952089--6952170	18	4.4	18	66	16	51	41	0	1	57	1.06
6955245--6955296	21	2.5	21	81	6	61	32	17	15	34	1.91
6955763--6955986	114	2.0	114	98	0	430	29	12	12	45	1.78
6956449--6956494	23	2.0	23	95	0	83	28	21	13	36	1.91
6956768--6956807	13	2.9	14	85	14	57	52	0	0	47	1.00
6956768--6956810	12	3.4	12	84	15	52	48	0	0	51	1.00
6957268--6957338	33	2.2	33	82	7	83	50	14	2	32	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6960045--6960079	18	1.9	18	94	0	61	48	0	51	0	1.00
6960615--6960648	18	1.9	18	88	5	52	58	0	0	41	0.98
6962431--6962485	7	7.9	7	78	8	58	41	30	1	25	1.66
6962460--6962484	13	1.9	13	100	0	50	44	32	0	24	1.54
6962437--6962501	20	3.2	20	72	12	60	46	24	3	26	1.67
6962646--6962679	17	1.9	18	88	5	52	50	0	2	47	1.16
6962646--6962679	18	1.9	17	88	5	50	50	0	2	47	1.16
6971591--6971639	16	3.0	17	85	14	68	42	0	0	57	0.99
6974119--6974154	17	2.2	16	90	5	54	36	5	16	41	1.72
6976767--6976812	25	1.9	23	86	8	65	34	4	6	54	1.46
6980720--6980766	11	4.6	10	82	12	60	74	2	8	14	1.15
6980720--6980766	22	2.2	20	88	7	67	74	2	8	14	1.15
6980784--6980888	6	17.3	6	89	3	86	17	6	4	71	1.25
6982910--6982955	25	1.9	23	86	8	65	34	4	4	56	1.39
6984170--6984199	15	2.0	15	93	0	51	70	0	0	30	0.88
6986023--6986057	17	2.1	17	94	0	61	14	20	22	42	1.88
6987693--6987896	92	2.2	92	88	3	297	22	20	8	48	1.77
6990481--6990625	43	3.4	43	86	1	184	28	23	8	39	1.85
6994024--6994063	22	1.9	21	85	10	55	30	12	5	52	1.60
7004132--7004164	15	2.1	16	88	5	50	69	21	9	0	1.15
7009726--7009792	29	2.3	29	92	0	107	38	0	11	49	1.40
7011124--7011179	13	4.3	13	71	8	51	37	0	0	62	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7012322--7012367	23	2.0	24	86	4	67	65	0	0	34	0.93
7013097--7013144	23	2.1	23	84	7	62	20	14	2	62	1.42
7015440--7015490	22	2.3	22	96	0	93	35	5	11	47	1.65
7018845--7018885	18	2.2	20	86	8	59	65	0	0	34	0.93
7018825--7018890	25	2.5	26	75	18	66	65	0	0	34	0.93
7018947--7018982	18	2.0	18	94	0	63	52	2	0	44	1.15
7018997--7019023	13	2.1	13	100	0	54	62	7	0	29	1.22
7018991--7019260	94	2.9	94	87	2	391	47	8	8	34	1.66
7019058--7019119	25	2.7	23	73	11	65	56	0	0	43	0.99
7019511--7019567	28	2.0	29	86	3	80	54	3	1	40	1.28
7021251--7021324	26	2.9	25	71	15	62	63	8	1	27	1.30
7023411--7023486	22	3.2	23	71	16	57	40	0	1	57	1.07
7027067--7027106	21	2.0	21	90	5	64	32	0	0	67	0.91
7029255--7029299	22	2.0	22	84	16	58	28	2	4	64	1.25
7030758--7030791	14	2.3	15	90	5	52	44	0	0	55	0.99
7032384--7032426	21	2.1	20	83	12	52	62	11	4	20	1.46
7032513--7032556	18	2.4	19	84	3	54	75	2	4	18	1.09
7032603--7032827	122	1.9	121	83	5	285	48	8	6	36	1.60
7040321--7040413	35	2.7	35	86	3	116	22	18	6	52	1.68
7058032--7058106	37	2.0	37	94	0	132	32	18	13	36	1.90
7064745--7064812	22	3.1	22	95	2	120	17	25	4	52	1.63
7064897--7064968	31	2.4	30	83	4	101	36	0	6	56	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7071723--7071765	21	1.9	23	86	13	63	55	11	6	25	1.60
7073405--7073451	16	3.1	16	84	6	62	34	2	0	63	1.06
7073976--7074038	31	2.0	31	84	6	83	36	7	11	44	1.69
7074251--7074428	85	2.1	86	89	2	270	51	9	5	33	1.58
7078435--7078531	31	3.2	29	79	5	77	46	11	9	32	1.72
7090778--7090831	21	2.6	21	88	5	74	31	25	11	31	1.91
7093184--7093294	29	3.9	29	89	2	152	38	16	19	25	1.92
7095617--7095672	19	2.9	19	84	7	69	71	1	1	25	1.05
7095635--7095677	11	4.1	11	79	11	54	67	0	2	30	1.03
7095600--7095676	20	3.9	20	81	6	77	68	2	1	27	1.10
7095600--7095675	39	1.9	39	81	5	91	69	2	1	26	1.09
7098437--7098470	14	2.4	14	85	0	50	67	8	0	23	1.18
7099782--7099827	24	1.9	24	86	0	65	43	10	30	15	1.81
7103439--7103487	24	2.0	24	92	7	82	28	12	24	34	1.91
7105220--7105274	21	2.6	21	80	11	76	34	18	16	30	1.93
7105920--7106017	40	2.4	41	78	8	103	29	21	5	43	1.74
7107659--7107756	42	2.3	42	92	0	160	26	25	7	40	1.81
7111270--7111421	23	6.5	22	84	7	133	11	23	21	43	1.85
7111271--7111395	46	2.7	47	83	6	155	11	23	21	44	1.84
7111294--7111439	69	2.1	71	87	10	212	12	22	20	44	1.85
7111291--7111439	46	3.2	44	79	12	140	12	22	21	44	1.85
7118632--7118735	23	4.4	23	84	7	138	10	24	22	43	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7118632--7118781	23	6.5	20	76	18	93	12	24	20	42	1.86
7123612--7123680	18	4.1	16	75	18	61	57	1	7	33	1.35
7123645--7123707	33	2.0	31	87	6	90	58	3	9	28	1.45
7123644--7123717	33	2.5	31	79	16	86	56	2	10	29	1.47
7123816--7123852	15	2.4	16	82	17	51	59	0	0	40	0.97
7123893--7123967	31	2.4	31	93	0	132	53	1	10	34	1.44
7123915--7123967	17	3.3	17	71	15	58	54	0	11	33	1.36
7131489--7131526	2	19.0	2	100	0	76	50	0	0	50	1.00
7132597--7132680	20	4.1	21	75	24	65	11	8	17	61	1.54
7132607--7132676	22	3.2	21	76	13	70	10	8	18	62	1.51

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143