genome.fa.s11.2.7.7.80.10.50.1000.85.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032255.1 Gossypioides kirkii chromosome KI_13
Parameters: 2 7 7 80 10 50 1000
Length:  42971368

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   

This is table  85  of  143  ( 17057 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26868083--26868178	16	5.4	16	67	22	57	11	18	29	40	1.86
26877717--26877798	21	4.0	21	75	13	73	28	14	25	31	1.95
26884062--26884097	3	12.3	3	94	5	65	36	0	0	63	0.94
26884222--26884308	27	3.3	27	80	4	97	19	27	28	24	1.98
26900118--26900285	7	24.0	7	75	1	104	45	25	1	28	1.61
26901114--26901213	43	2.3	43	91	0	164	47	14	10	29	1.76
26902136--26902175	19	2.1	19	95	0	71	42	15	5	37	1.68
26927168--26927218	24	2.1	24	92	0	84	21	9	9	58	1.58
26928218--26928482	118	2.3	118	78	3	277	37	7	24	30	1.83
26928289--26928487	59	3.4	59	71	9	147	37	8	25	29	1.84
26928470--26928580	29	3.8	30	78	12	106	32	5	26	36	1.79
26928487--26928630	29	4.9	29	80	9	112	30	4	25	39	1.76
26928507--26928630	30	4.2	29	81	6	124	29	4	23	42	1.72
26928523--26928651	60	2.2	60	81	0	150	31	3	26	38	1.74
26928522--26928670	60	2.5	60	76	3	147	30	4	25	39	1.76
26930736--26930876	6	24.2	6	69	11	87	49	2	2	45	1.28
26930772--26930857	41	2.1	41	91	0	136	54	0	3	41	1.17
26930742--26930822	17	4.7	17	85	7	101	51	2	1	44	1.22
26930813--26930857	17	2.6	18	85	3	65	53	0	4	42	1.21
26930772--26930869	41	2.4	41	87	0	124	53	1	3	42	1.23
26943086--26943125	17	2.4	17	82	0	53	52	15	15	17	1.75
26947255--26947313	21	2.8	21	78	0	64	38	25	11	23	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26947899--26947977	36	2.2	36	84	4	97	15	21	16	46	1.83
26953690--26953747	21	2.8	21	81	5	64	39	25	12	22	1.89
26954434--26954534	36	2.8	36	89	3	141	19	25	16	37	1.93
26955430--26955509	31	2.7	30	78	5	90	40	10	12	37	1.77
26956153--26956191	17	2.3	17	86	8	53	58	2	0	38	1.12
26961756--26961813	29	2.0	30	83	10	75	29	8	32	29	1.87
26961804--26962028	59	3.8	59	77	8	185	38	6	22	33	1.79
26961950--26962153	58	3.5	58	80	8	200	33	1	25	38	1.67
26961916--26962153	30	8.1	29	77	8	180	32	2	26	37	1.72
26962926--26963021	45	2.1	47	81	11	110	22	13	5	58	1.55
26963224--26963252	3	9.7	3	100	0	58	0	0	31	68	0.89
26963251--26963310	3	20.0	3	100	0	120	33	0	0	66	0.92
26963944--26963993	18	2.7	18	87	3	64	54	4	4	38	1.38
26963984--26964028	17	2.6	18	82	3	56	53	2	4	40	1.33
26964398--26965318	201	4.6	200	88	2	1243	24	23	18	33	1.96
26972463--26972504	20	2.1	20	100	0	84	14	35	23	26	1.93
26977345--26977770	59	7.4	58	76	11	242	37	2	24	35	1.70
26977342--26977544	30	6.9	29	68	11	110	40	2	23	33	1.70
26977342--26977770	29	14.9	29	69	17	102	37	2	24	35	1.70
26977437--26977780	30	12.0	29	71	13	196	35	2	25	36	1.68
26977540--26977589	20	2.5	19	84	15	57	34	0	28	38	1.57
26977568--26977776	59	3.5	58	86	6	269	33	2	25	37	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26979499--26979619	17	7.0	17	78	8	120	52	1	1	44	1.21
26979508--26979619	6	19.2	6	68	11	72	52	1	1	43	1.22
26979565--26979619	29	2.0	27	85	7	74	50	0	1	47	1.11
26987688--26987741	21	2.6	21	90	0	90	25	20	20	33	1.97
26993439--26993470	9	3.6	9	100	0	64	12	25	0	62	1.30
26993602--26993629	12	2.3	12	100	0	56	25	0	67	7	1.15
27005446--27005579	36	3.9	36	67	16	86	31	22	16	29	1.96
27005502--27005604	30	3.2	30	72	19	91	28	22	19	30	1.98
27005431--27005597	66	2.5	66	84	3	203	30	22	16	30	1.96
27005546--27005618	30	2.4	30	88	0	101	31	19	19	30	1.96
27007960--27008012	18	2.8	19	88	11	74	56	1	5	35	1.34
27010991--27011033	9	4.8	9	94	0	68	37	0	32	30	1.58
27010986--27011033	18	2.7	18	86	0	69	39	0	33	27	1.57
27022062--27022115	19	2.8	20	86	5	76	44	0	12	42	1.43
27022392--27022426	16	2.1	18	89	10	56	14	0	31	54	1.40
27022475--27022503	2	14.5	2	100	0	58	48	0	0	51	1.00
27032148--27032182	17	2.1	16	89	5	52	20	5	0	74	1.02
27034763--27034855	45	2.1	45	97	0	177	43	13	6	36	1.71
27037552--27037633	20	3.8	20	73	19	74	8	3	15	71	1.24
27037565--27037665	17	6.4	16	73	19	70	6	4	14	73	1.22
27037597--27037644	20	2.4	20	78	0	60	4	4	18	72	1.17
27037580--27037672	32	3.1	30	79	10	91	5	4	17	73	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
27037636--27037720	21	4.0	21	77	8	73	3	4	22	69	1.23
27037645--27037719	24	3.2	23	84	3	87	4	5	22	68	1.28
27039229--27039255	7	3.9	7	100	0	54	85	0	14	0	0.61
27039509--27039533	3	8.3	3	100	0	50	0	36	0	64	0.94
27041988--27042046	17	3.4	17	88	4	82	20	32	22	25	1.98
27042039--27042084	19	2.6	17	83	12	65	15	15	21	47	1.81
27042046--27042086	19	2.2	19	95	0	73	14	12	19	53	1.72
27043010--27043073	32	2.0	32	93	6	112	25	17	18	39	1.92
27043928--27044158	36	6.4	36	85	0	309	29	9	24	35	1.87
27044408--27044544	66	2.1	66	87	2	195	19	11	25	43	1.85
27044614--27044686	10	7.4	10	87	1	85	36	1	19	42	1.60
27044677--27044791	23	5.0	23	89	1	142	32	3	14	49	1.60
27049580--27049682	23	4.5	23	85	0	125	32	3	16	47	1.65
27049580--27049682	46	2.2	46	85	0	152	32	3	16	47	1.65
27055163--27055222	21	2.9	21	82	0	75	33	26	13	26	1.93
27056573--27056622	20	2.5	20	81	15	50	42	14	0	44	1.44
27056884--27057000	23	5.1	23	86	2	155	34	4	12	48	1.61
27056884--27057000	45	2.6	46	88	1	164	34	4	12	48	1.61
27065570--27065610	20	2.0	21	90	4	66	58	9	9	21	1.59
27067765--27067807	14	3.0	14	80	6	59	44	23	0	32	1.54
27067765--27067810	15	3.1	15	79	14	60	45	21	0	32	1.52
27070254--27070284	16	1.9	16	93	0	53	61	0	16	22	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
27071082--27071138	26	2.2	26	81	9	64	31	22	17	28	1.97
27071131--27071204	37	2.0	38	84	7	98	31	12	21	35	1.90
27071142--27071216	38	2.0	37	86	2	105	32	10	22	34	1.89
27072035--27072104	33	2.1	33	97	0	131	14	28	5	51	1.65
27080275--27080692	37	11.1	37	76	5	254	33	28	21	16	1.95
27080275--27080692	38	11.1	37	77	3	309	33	28	21	16	1.95
27080275--27080693	75	5.6	74	76	6	362	33	28	21	16	1.95
27080413--27080693	113	2.5	113	82	1	348	33	29	20	15	1.94
27080373--27080692	151	2.1	150	84	1	408	33	28	21	16	1.95
27080787--27080817	12	2.6	12	100	0	62	41	0	16	41	1.48
27097416--27097460	6	7.5	6	85	9	56	77	0	22	0	0.76
27097410--27097460	11	4.3	12	85	9	70	78	0	21	0	0.75
27097914--27097956	19	2.2	20	88	12	63	53	2	2	41	1.26
27101463--27101546	24	3.5	24	90	0	114	47	7	17	27	1.74
27106464--27106496	7	4.9	7	88	7	50	33	12	24	30	1.91
27107806--27107858	24	2.2	24	82	0	61	28	1	7	62	1.33
27112765--27112809	22	2.0	23	82	4	56	40	0	2	57	1.11
27118481--27118595	60	1.9	60	87	5	171	51	3	3	41	1.36
27120653--27120710	26	2.2	27	79	14	68	50	5	1	43	1.35
27124919--27125026	50	2.2	50	84	3	137	46	1	0	50	1.18
27141305--27141448	71	2.0	71	97	0	270	27	18	7	47	1.75
27151121--27151154	8	4.2	8	84	0	50	73	5	0	20	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
27152704--27152734	16	2.0	15	93	6	53	19	3	0	77	0.90
27152948--27153512	39	14.2	39	81	4	556	24	16	29	29	1.97
27152948--27153512	81	7.1	78	79	6	557	24	16	29	29	1.97
27152948--27153520	120	4.8	120	80	5	601	23	16	29	29	1.96
27167369--27167429	22	2.7	24	78	12	67	42	18	24	14	1.88
27174477--27174528	18	3.1	17	80	5	52	34	0	1	63	1.06
27174611--27174670	16	3.7	16	76	12	52	66	0	0	33	0.92
27174609--27174680	25	3.0	24	78	11	67	66	0	0	33	0.92
27174625--27174671	16	2.9	16	81	6	60	65	0	0	34	0.93
27175000--27175044	23	1.9	23	86	13	65	37	0	4	57	1.19

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143