genome.fa.s11.2.7.7.80.10.50.1000.73.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032255.1 Gossypioides kirkii chromosome KI_13
Parameters: 2 7 7 80 10 50 1000
Length:  42971368

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   

This is table  73  of  143  ( 17057 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23713255--23713322	33	2.1	33	97	0	127	29	19	19	32	1.96
23719213--23719268	24	2.3	24	96	0	103	30	7	26	35	1.83
23725327--23725583	25	10.4	25	78	2	205	24	16	21	37	1.93
23725336--23725505	49	3.4	49	80	4	189	26	17	20	36	1.94
23725328--23725580	74	3.4	75	80	2	251	25	16	20	37	1.93
23736765--23736818	27	2.0	28	81	3	65	61	1	35	1	1.18
23741581--23741636	24	2.3	24	87	0	76	35	7	23	33	1.82
23746561--23746805	25	9.8	25	89	0	328	21	17	25	35	1.95
23746561--23746805	75	3.3	75	90	0	364	21	17	25	35	1.95
23751693--23751742	19	2.6	18	84	15	57	82	2	0	16	0.77
23751681--23751742	9	6.6	9	78	15	63	80	3	1	14	0.91
23763861--23763902	22	1.9	22	90	0	66	21	4	23	50	1.68
23777706--23777744	17	2.3	17	86	0	51	48	25	10	15	1.76
23777785--23777861	38	2.0	38	100	0	154	49	29	7	12	1.69
23783539--23783598	30	2.0	30	93	0	102	50	15	3	31	1.60
23795536--23795646	17	6.4	17	75	11	82	40	0	5	54	1.24
23795569--23795646	6	13.3	6	73	10	63	43	0	2	53	1.14
23795536--23795646	35	3.2	34	81	12	111	40	0	5	54	1.24
23796303--23796345	3	14.0	3	85	4	59	62	0	2	34	1.08
23796303--23796370	9	7.2	9	75	9	55	58	2	1	36	1.22
23797437--23797590	58	2.6	59	89	4	222	30	25	2	41	1.69
23797416--23797590	29	5.9	29	79	6	181	31	25	3	39	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23797437--23797625	58	3.2	59	85	5	188	29	26	3	40	1.72
23797437--23797676	29	8.2	29	71	14	145	30	26	3	40	1.72
23809558--23810184	48	12.9	48	81	2	642	39	24	24	11	1.88
23809558--23810179	97	6.4	97	83	1	679	39	24	24	11	1.89
23809596--23810147	195	2.8	195	85	1	680	40	24	24	11	1.87
23810747--23810824	6	13.3	6	72	10	54	43	0	5	51	1.24
23810714--23810809	35	2.7	35	85	9	117	37	0	7	55	1.28
23810714--23810811	17	5.6	17	79	7	108	37	0	7	55	1.28
23810747--23810824	35	2.2	35	86	4	104	43	0	5	51	1.24
23811507--23811546	18	2.2	18	86	8	55	52	5	5	37	1.45
23812600--23812845	29	8.4	28	70	14	103	29	24	5	40	1.78
23812641--23812844	59	3.5	58	82	8	220	30	23	4	40	1.76
23812767--23812935	59	2.8	59	79	7	182	30	28	4	36	1.78
23812792--23812932	30	4.8	27	69	17	86	31	29	3	34	1.75
23812792--23812956	59	2.8	56	75	14	145	32	28	4	34	1.78
23819461--23819506	25	1.9	25	86	8	69	32	4	6	56	1.45
23840030--23840558	48	10.9	48	81	5	569	38	22	26	12	1.90
23840020--23840571	147	3.8	146	88	1	723	39	22	26	12	1.89
23841086--23841163	17	4.5	17	76	12	70	37	0	7	55	1.29
23841132--23841185	24	2.2	24	87	6	74	42	0	5	51	1.25
23841835--23841927	15	5.8	15	75	12	62	53	3	4	38	1.37
23843025--23843311	59	4.9	57	76	11	194	30	25	4	39	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23843021--23843220	88	2.3	89	81	8	232	31	23	5	40	1.76
23842979--23843220	29	8.3	29	73	16	139	30	23	4	40	1.76
23849813--23849858	25	1.9	25	86	8	69	32	4	6	56	1.45
23881460--23881519	30	2.0	30	96	0	111	51	13	3	31	1.57
23892498--23892549	17	3.0	17	77	5	68	40	0	5	53	1.25
23892498--23892544	24	2.0	24	83	8	60	42	0	4	53	1.20
23892499--23892562	18	3.6	17	77	12	67	40	1	4	53	1.31
23892498--23892564	35	1.9	35	87	6	100	43	1	4	50	1.31
23893220--23893319	3	32.3	3	69	13	51	55	5	4	36	1.41
23894370--23894540	29	5.9	30	77	10	176	32	24	1	41	1.65
23894327--23894543	86	2.5	85	76	9	215	32	25	2	39	1.69
23894327--23894546	30	7.6	28	74	12	187	32	25	2	39	1.68
23906636--23907065	48	8.9	48	83	2	500	37	23	27	11	1.90
23906625--23907059	146	3.0	145	86	2	550	37	23	27	11	1.89
23906636--23907078	97	4.6	97	83	1	528	37	22	27	12	1.90
23907594--23907704	17	6.4	17	75	11	82	40	0	6	53	1.26
23907627--23907704	6	13.3	6	75	10	63	43	0	3	52	1.19
23907594--23907704	35	3.2	35	82	12	122	40	0	6	53	1.26
23908364--23908412	9	5.4	9	77	0	53	55	4	0	40	1.19
23908364--23908423	18	3.3	18	79	4	59	53	5	1	40	1.33
23909503--23909737	29	8.1	29	75	12	144	31	23	5	39	1.79
23909531--23909733	59	3.5	58	82	10	236	32	23	4	39	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23909541--23909763	59	3.8	59	82	5	215	31	24	4	38	1.77
23909491--23909817	29	11.2	30	70	13	134	30	24	5	39	1.77
23916339--23916384	25	1.9	25	86	8	69	32	4	6	56	1.45
23920376--23920417	5	7.8	5	85	15	57	21	2	0	76	0.90
23920376--23920420	11	4.1	11	88	11	65	22	2	0	75	0.91
23921330--23921368	13	3.1	12	82	10	51	66	0	12	20	1.24
23921336--23921370	13	2.7	13	81	0	52	71	0	14	14	1.15
23922424--23922469	25	1.9	23	86	8	65	34	4	4	56	1.39
23933748--23933833	33	2.6	33	96	1	154	34	10	5	48	1.61
23933829--23933898	36	1.9	36	100	0	140	34	17	14	34	1.90
23934857--23935062	31	6.9	29	76	7	146	39	1	21	36	1.63
23934856--23935062	61	3.5	60	74	8	165	40	1	21	36	1.63
23937047--23937214	85	2.0	85	81	4	196	25	21	14	38	1.92
23937264--23937421	85	1.9	85	83	0	208	25	25	15	33	1.95
23937055--23937710	209	3.1	208	86	2	854	24	21	16	37	1.93
23949506--23949849	30	11.6	29	78	8	221	39	2	22	35	1.66
23949525--23949843	59	5.4	58	77	7	241	38	2	22	36	1.67
23950894--23950928	10	3.5	10	100	0	70	71	0	0	28	0.86
23957403--23957427	2	12.5	2	100	0	50	48	0	0	52	1.00
23957703--23957764	25	2.5	25	79	12	65	33	3	11	51	1.54
23965666--23965728	18	3.6	18	71	4	65	50	14	15	19	1.77
23965669--23965749	35	2.3	35	85	4	101	48	11	19	20	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23966176--23966221	3	15.3	3	82	8	58	2	34	0	63	1.07
23966159--23966210	24	2.2	24	89	6	79	0	34	0	65	0.93
23966159--23966210	12	4.4	11	83	13	59	0	34	0	65	0.93
23972164--23972199	17	2.1	17	89	5	54	13	36	2	47	1.58
23985568--23985615	23	2.1	23	92	0	78	50	8	20	20	1.74
23987196--23987428	25	9.4	25	84	4	274	21	16	25	36	1.94
23991684--23991810	36	3.5	36	80	4	130	24	13	25	36	1.92
23997511--23998116	303	2.0	303	98	0	1176	38	25	12	23	1.90
23998268--23998318	24	2.1	24	88	0	75	23	9	9	56	1.61
24000236--24000310	24	3.1	24	88	0	114	25	9	9	56	1.61
24027672--24027720	24	2.1	24	85	7	66	30	6	28	34	1.82
24027680--24027732	24	2.2	24	96	0	97	28	7	26	37	1.83
24028997--24029027	15	2.1	15	93	0	53	51	6	3	38	1.44
24031687--24031730	23	1.9	23	85	0	61	70	9	0	20	1.14
24031906--24031962	26	2.2	25	90	6	87	77	5	5	12	1.11
24049167--24049323	71	2.2	71	90	2	253	33	23	20	22	1.97
24055117--24055175	29	2.0	29	83	0	73	40	8	0	50	1.33
24082372--24082451	24	3.3	24	92	0	133	32	7	25	35	1.84
24085904--24085977	23	3.3	22	77	7	62	68	6	2	21	1.25
24086311--24086363	25	2.2	24	83	10	63	62	5	13	18	1.50
24087964--24088003	18	2.2	18	86	0	53	37	2	0	60	1.11
24088303--24088369	32	2.1	33	88	2	100	37	52	4	5	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
24089537--24089567	8	3.8	8	91	8	53	12	3	0	83	0.75
24090938--24090977	22	1.9	20	90	10	62	47	2	17	32	1.61
24098239--24098278	22	1.9	20	90	10	62	47	2	17	32	1.61
24101474--24101534	26	2.3	27	77	13	63	54	13	6	26	1.63
24112106--24112130	11	2.3	11	100	0	50	44	0	0	56	0.99
24120172--24120223	24	2.2	25	79	10	63	7	3	19	69	1.29
24120181--24120284	12	9.1	12	74	11	85	6	4	17	71	1.26
24120185--24120243	21	2.8	20	77	7	64	6	1	16	74	1.11
24120185--24120298	44	2.6	44	81	8	119	7	4	18	70	1.27
24126520--24126591	34	2.2	32	83	16	85	61	8	1	29	1.34

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143