genome.fa.s11.2.7.7.80.10.50.1000.134.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032255.1 Gossypioides kirkii chromosome KI_13
Parameters: 2 7 7 80 10 50 1000
Length:  42971368

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   

This is table  134  of  143  ( 17057 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39736406--39736537	15	8.8	15	65	9	63	25	19	24	31	1.98
39736599--39736725	15	8.3	15	73	5	101	26	19	22	30	1.98
39736369--39736772	30	13.1	30	80	6	351	24	20	24	30	1.98
39736369--39736772	63	6.5	63	88	1	453	24	20	24	30	1.98
39742220--39742262	22	2.0	22	86	9	61	60	2	0	37	1.10
39742836--39742890	18	3.0	18	78	5	56	65	3	0	30	1.10
39746859--39746892	17	1.9	18	94	5	61	55	0	0	44	0.99
39755439--39755465	5	5.4	5	100	0	54	44	55	0	0	0.99
39765719--39765842	51	2.4	51	82	5	135	45	5	12	35	1.66
39765747--39765853	51	2.1	51	84	3	135	48	5	12	33	1.64
39766822--39766851	3	10.0	3	92	0	51	63	3	0	33	1.11
39767180--39767240	30	2.0	31	90	6	97	37	3	3	55	1.32
39767950--39767979	16	1.9	16	93	6	53	26	10	23	40	1.86
39769366--39769430	26	2.5	26	82	0	76	64	0	0	35	0.94
39770026--39770057	5	6.2	5	96	3	55	78	3	18	0	0.89
39781114--39781142	7	4.1	7	100	0	58	72	0	0	27	0.85
39781739--39781768	12	2.5	12	88	0	51	50	23	0	26	1.50
39783055--39783096	22	1.9	22	85	9	59	42	4	14	38	1.66
39783513--39783849	162	2.1	159	83	7	407	36	14	12	36	1.84
39784666--39784725	29	2.1	29	81	12	70	46	1	3	48	1.28
39786307--39786356	22	2.3	22	83	10	59	62	30	4	4	1.32
39787437--39787467	16	1.9	16	93	0	53	54	16	9	19	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39789665--39789710	22	2.1	22	88	4	67	52	36	0	10	1.37
39797643--39797682	15	2.5	16	92	8	64	32	0	0	67	0.91
39821228--39821268	19	2.1	19	86	9	55	46	0	2	51	1.14
39821751--39821800	26	1.9	26	87	0	73	60	14	0	26	1.34
39822841--39822878	12	3.2	12	92	7	60	44	0	7	47	1.32
39824285--39824326	8	5.2	8	77	11	50	33	2	0	64	1.07
39824285--39824325	15	2.6	16	84	7	57	34	2	0	63	1.08
39824251--39824420	81	2.1	83	79	8	186	43	4	3	48	1.39
39825282--39825319	18	2.1	18	90	9	60	47	15	13	23	1.81
39832147--39832274	64	2.0	64	100	0	256	34	20	18	26	1.96
39834786--39834838	3	18.0	3	96	3	99	32	0	0	67	0.91
39841761--39841804	14	3.1	14	75	12	54	31	6	4	56	1.46
39843120--39843163	22	2.0	22	86	4	63	50	2	13	34	1.55
39845409--39845454	22	2.0	23	83	4	58	60	0	0	39	0.97
39852300--39852345	13	3.6	13	80	11	51	58	6	0	34	1.24
39852622--39852679	21	2.9	18	77	22	55	36	0	0	63	0.94
39852997--39853062	30	2.2	30	83	5	80	43	4	3	48	1.38
39853264--39853594	165	2.0	165	96	0	617	43	16	9	30	1.79
39866325--39866721	132	3.0	132	91	0	625	26	22	20	30	1.99
39871755--39871819	33	2.0	33	93	0	112	38	15	27	18	1.91
39889182--39889223	3	13.7	3	85	9	50	71	0	0	28	0.86
39889377--39889418	13	3.3	13	80	6	50	61	0	0	38	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39889888--39889936	25	2.0	24	84	4	62	53	12	0	34	1.39
39892460--39892516	19	3.0	19	73	17	55	22	12	28	36	1.90
39895448--39895487	17	2.4	17	87	4	64	40	0	2	57	1.12
39895448--39895518	6	12.0	6	74	14	58	49	1	1	47	1.18
39895537--39895566	7	4.3	7	95	0	51	16	43	30	10	1.81
39895561--39895599	12	2.9	14	81	14	55	35	30	17	15	1.91
39895558--39895598	14	3.2	13	80	13	57	34	31	19	14	1.92
39895644--39895703	20	3.0	20	95	2	102	20	45	16	18	1.86
39897121--39897434	162	1.9	163	88	5	476	24	15	13	46	1.82
39897149--39897456	163	1.9	160	86	6	408	25	15	12	46	1.81
39897528--39897641	30	3.7	30	94	2	192	35	24	4	35	1.76
39897622--39897729	30	3.7	29	73	23	100	31	26	5	36	1.80
39897540--39897840	59	5.1	59	83	9	262	32	25	4	36	1.78
39897632--39897840	29	7.1	27	70	21	129	30	26	5	37	1.80
39897621--39897840	59	3.8	59	88	3	311	31	25	5	37	1.79
39897590--39897841	118	2.1	117	86	7	359	31	26	5	36	1.79
39899602--39899652	26	2.0	26	84	7	68	9	9	7	72	1.28
39907184--39907253	11	6.4	11	71	0	50	20	10	5	64	1.44
39908022--39908072	2	25.5	2	95	0	93	49	0	0	50	1.00
39920777--39920824	14	3.5	14	82	5	71	6	10	6	77	1.13
39921074--39921121	14	3.5	14	77	5	62	75	6	12	6	1.19
39930080--39930288	42	4.9	43	81	5	221	27	25	11	35	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39931084--39931127	22	2.2	19	84	12	52	31	13	0	54	1.39
39932717--39932798	23	3.3	24	72	21	62	56	7	6	30	1.51
39938674--39938721	13	3.6	14	78	10	57	25	8	29	37	1.85
39947447--39947479	16	2.1	16	100	0	66	30	18	6	45	1.73
39947591--39947624	16	2.1	17	88	5	52	44	0	0	55	0.99
39949207--39949250	3	14.7	3	85	0	61	27	0	38	34	1.57
39950041--39950107	31	2.2	31	83	5	82	28	20	20	29	1.98
39950896--39950942	24	2.0	24	83	8	60	31	10	8	48	1.68
39956608--39956638	2	15.5	2	93	0	53	48	0	0	51	1.00
39958323--39958347	6	4.2	6	100	0	50	32	0	0	68	0.90
39964277--39964324	16	2.8	17	81	12	55	31	0	2	66	1.03
39964287--39964332	18	2.8	16	81	12	56	30	0	2	67	1.03
39967238--39967265	7	4.0	7	100	0	56	42	0	0	57	0.99
39969820--39969858	20	1.9	20	89	5	60	38	0	2	58	1.12
39974927--39974960	12	2.8	12	86	0	50	0	17	2	79	0.86
39974998--39975032	14	2.5	14	85	0	52	62	2	0	34	1.10
39978520--39978561	22	1.9	23	85	9	61	54	0	4	40	1.21
39983713--39983782	31	2.3	31	82	0	86	40	10	0	50	1.36
39989415--39989493	30	2.6	32	82	6	101	50	6	7	35	1.56
39989463--39989571	55	1.9	57	85	7	150	53	4	1	40	1.32
39995478--39995556	40	2.0	40	92	0	131	30	3	17	48	1.65
39997477--39997556	33	2.4	33	91	0	133	28	26	26	18	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40004352--40004386	16	2.2	16	89	0	52	48	20	2	28	1.63
40006951--40006980	15	2.1	14	93	6	51	60	0	30	10	1.30
40009296--40009336	14	2.9	15	78	7	50	36	2	2	58	1.24
40010088--40010141	28	1.9	28	92	0	90	33	14	24	27	1.94
40022908--40022955	20	2.5	19	80	9	62	47	0	4	47	1.21
40023802--40023827	2	13.0	2	100	0	52	50	0	0	50	1.00
40027002--40027041	20	2.1	19	90	4	62	40	10	12	37	1.77
40029692--40029741	16	3.2	16	71	21	52	60	6	0	34	1.21
40044453--40044586	67	2.0	67	97	0	250	36	20	15	27	1.93
40044910--40045011	11	9.0	11	69	10	62	64	6	1	26	1.29
40046332--40046435	32	3.3	31	77	15	97	36	1	3	57	1.28
40046332--40046450	32	3.9	31	74	18	92	37	1	3	57	1.26
40047067--40047110	21	2.0	22	86	4	63	59	4	0	36	1.18
40047095--40047126	11	2.9	11	90	0	55	50	0	0	50	1.00
40047983--40048024	9	4.7	9	78	21	52	42	0	0	57	0.99
40047983--40048053	31	2.4	29	90	9	110	43	0	0	56	0.99
40048015--40048058	22	2.0	22	82	8	54	50	2	0	47	1.13
40056841--40056899	31	1.9	30	83	10	75	37	3	5	54	1.39
40074336--40074421	6	14.7	6	73	13	72	45	2	1	51	1.21
40074336--40074416	17	4.6	17	81	7	92	44	1	1	53	1.16
40074336--40074396	23	2.6	24	82	10	72	42	1	1	54	1.20
40074336--40074416	35	2.3	35	87	4	119	44	1	1	53	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40074337--40074421	29	2.9	29	73	13	68	44	2	1	51	1.21
40074304--40074416	53	2.2	52	85	4	147	40	1	2	54	1.24
40075020--40075095	15	5.6	13	74	22	59	55	2	5	36	1.37
40076240--40076525	30	9.6	30	80	7	298	37	24	2	35	1.70
40076239--40076525	60	4.8	60	87	5	397	37	24	2	35	1.70
40076477--40076623	59	2.5	58	78	2	177	33	30	2	33	1.72
40076565--40076663	50	2.0	49	86	5	137	32	31	3	33	1.73
40076505--40076723	108	2.0	108	81	6	257	29	30	4	35	1.78
40077874--40077909	18	2.0	18	94	0	63	58	0	0	41	0.98
40078235--40078270	18	2.0	18	94	0	63	41	0	0	58	0.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143