genome.fa.s11.2.7.7.80.10.50.1000.106.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032255.1 Gossypioides kirkii chromosome KI_13
Parameters: 2 7 7 80 10 50 1000
Length:  42971368

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   

This is table  106  of  143  ( 17057 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32461295--32461347	21	2.5	21	90	0	79	24	7	24	43	1.80
32461403--32461461	21	2.8	21	84	0	82	23	13	28	33	1.93
32461839--32462273	174	2.5	174	79	4	432	38	14	23	24	1.91
32461862--32462273	87	4.7	87	79	5	339	38	14	23	24	1.91
32472650--32472811	9	17.7	9	69	19	70	62	2	1	32	1.19
32472724--32472812	28	3.2	28	73	13	85	62	4	0	32	1.15
32472940--32473012	27	2.7	27	78	16	71	60	2	1	35	1.20
32473025--32473064	9	4.2	9	84	9	53	65	2	0	32	1.06
32473026--32473064	19	2.1	19	90	4	62	64	2	0	33	1.08
32472930--32473064	28	4.8	28	67	19	75	57	2	1	37	1.23
32473020--32473073	28	1.9	28	81	7	65	62	3	0	33	1.12
32474342--32474381	14	2.7	16	77	18	50	67	0	0	32	0.91
32476172--32476303	9	14.0	9	66	10	59	63	2	3	30	1.24
32476197--32476269	29	2.5	29	80	4	85	58	1	2	36	1.21
32478446--32478493	16	3.1	15	76	8	51	35	0	4	60	1.16
32495733--32495805	36	2.0	36	100	0	146	36	19	24	19	1.94
32496576--32496608	14	2.3	15	89	5	50	60	0	0	39	0.97
32500739--32500777	19	2.1	19	95	0	69	23	25	12	38	1.90
32500940--32500979	18	2.2	18	95	0	71	37	5	0	57	1.21
32512695--32512735	12	3.3	12	86	3	55	56	0	2	41	1.13
32514695--32514882	26	7.2	26	80	5	184	25	19	28	26	1.99
32514695--32514882	78	2.4	78	82	1	216	25	19	28	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32518738--32518832	24	4.1	23	72	19	74	42	0	1	56	1.06
32518780--32518830	21	2.3	22	80	13	59	50	0	0	49	1.00
32521779--32521846	20	3.5	20	76	8	59	58	0	7	33	1.26
32521945--32521983	18	2.2	18	86	9	53	71	0	2	25	0.98
32522059--32522110	18	2.6	20	75	16	54	32	9	5	51	1.58
32522101--32522172	21	3.4	21	80	3	65	38	2	0	58	1.13
32522101--32522180	11	7.6	10	76	10	63	38	2	0	58	1.11
32522116--32522176	21	3.0	20	82	4	68	42	3	0	54	1.17
32557889--32558179	156	1.9	156	97	0	555	40	3	23	31	1.72
32564263--32564287	12	2.1	12	100	0	50	76	0	0	24	0.80
32564643--32565143	242	2.1	244	86	6	700	49	4	7	38	1.51
32572254--32572467	23	9.5	23	73	14	160	42	21	24	11	1.86
32572255--32572467	48	4.8	44	76	13	168	41	21	24	11	1.87
32572308--32572382	39	1.9	39	91	0	123	44	21	22	12	1.85
32573493--32573558	33	1.9	36	84	9	93	9	31	6	53	1.57
32579203--32579305	54	1.9	54	82	7	129	43	11	0	43	1.47
32580999--32581027	2	14.5	2	100	0	58	48	0	0	51	1.00
32582845--32582869	2	12.5	2	100	0	50	48	0	0	52	1.00
32583428--32583452	12	2.1	12	100	0	50	16	24	12	48	1.79
32583505--32583583	31	2.6	31	84	7	92	37	1	7	53	1.38
32586727--32586872	58	2.5	58	81	11	174	45	2	1	50	1.24
32587041--32587094	16	3.4	16	92	0	90	27	29	3	38	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32593200--32593234	2	17.5	2	100	0	70	51	0	0	48	1.00
32602589--32602701	59	1.9	59	81	3	136	51	11	11	25	1.72
32602673--32602783	31	3.7	31	67	18	81	50	9	15	25	1.73
32606137--32606183	22	2.1	23	84	7	62	55	4	2	38	1.31
32610402--32610488	24	3.6	24	87	0	111	27	13	6	51	1.66
32612397--32612504	48	2.2	48	88	0	162	26	14	9	49	1.74
32612400--32612491	24	3.8	24	92	0	157	26	11	8	53	1.66
32620929--32620974	12	3.8	12	83	8	58	52	4	0	43	1.21
32633413--32633446	15	2.1	17	89	10	54	64	20	5	8	1.43
32636208--32636254	19	2.6	18	81	15	53	44	6	2	46	1.40
32644633--32644753	39	3.0	40	85	4	174	28	8	8	55	1.58
32652666--32652702	18	2.1	18	89	0	56	54	10	5	29	1.57
32656934--32656968	11	3.0	11	88	12	52	17	0	2	80	0.84
32656936--32656990	18	2.9	18	84	12	67	16	3	1	78	0.98
32656934--32656989	12	4.5	12	76	13	51	17	3	1	76	1.01
32661773--32661816	21	2.0	22	82	4	54	18	40	6	34	1.77
32663021--32663084	33	1.9	33	87	0	92	35	17	20	26	1.94
32663032--32663148	33	3.5	33	80	6	112	31	17	21	29	1.96
32665483--32665540	23	2.5	23	85	0	71	20	18	27	32	1.97
32666253--32666294	22	1.9	22	90	0	66	0	19	0	80	0.70
32666253--32666297	11	4.4	10	84	15	56	0	17	0	82	0.68
32666253--32666297	10	4.4	10	80	5	54	0	17	0	82	0.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32666275--32666386	37	3.2	35	81	14	135	5	13	6	75	1.18
32666304--32666365	21	3.0	21	76	4	72	3	11	4	80	0.98
32666277--32666381	33	3.2	32	79	16	115	5	14	5	74	1.19
32666320--32666387	20	3.5	20	69	20	63	5	11	8	73	1.24
32666505--32666568	32	2.0	32	96	0	119	48	15	12	23	1.79
32666817--32666866	23	2.1	23	85	3	64	68	2	4	26	1.18
32674702--32674737	18	1.9	19	88	5	56	11	5	16	66	1.40
32687838--32687900	24	2.6	24	87	0	90	49	7	14	28	1.71
32689839--32689937	24	4.1	24	94	0	171	56	8	11	24	1.61
32695865--32695975	33	3.4	33	82	0	123	32	16	22	28	1.95
32697057--32697093	17	2.2	17	100	0	74	51	0	24	24	1.49
32698206--32698338	33	4.0	33	77	5	110	33	16	22	27	1.96
32699340--32700092	375	2.0	374	93	0	1299	38	12	13	35	1.82
32702020--32702084	26	2.5	26	87	2	96	36	3	27	32	1.72
32706386--32706450	26	2.5	26	92	2	114	36	3	27	32	1.72
32708655--32708727	24	3.0	24	97	0	137	54	5	12	27	1.59
32715034--32715116	41	2.0	41	88	4	123	26	8	7	57	1.54
32716306--32716385	33	2.4	33	85	0	106	30	16	23	30	1.96
32722979--32723109	33	4.0	33	79	4	106	32	14	25	27	1.95
32723048--32723109	32	1.9	32	90	0	97	29	14	25	30	1.95
32728340--32728403	33	1.9	33	87	0	92	34	17	21	26	1.95
32728382--32728467	33	2.6	33	78	10	95	31	17	20	30	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32738342--32738414	29	2.5	29	81	0	92	10	41	10	36	1.76
32742957--32743027	24	3.0	24	82	0	88	56	5	8	29	1.52
32748971--32749091	33	3.7	33	85	0	98	30	19	23	27	1.98
32749952--32750001	17	3.4	17	65	35	51	58	20	14	8	1.61
32749949--32750002	27	2.0	27	100	0	108	55	22	14	7	1.64
32750204--32750236	17	1.9	17	100	0	66	57	0	18	24	1.40
32751352--32751460	33	3.3	33	79	7	123	33	14	23	28	1.94
32752771--32752859	29	3.2	29	65	26	82	24	12	14	48	1.78
32752745--32752859	55	2.1	55	96	1	214	24	11	13	50	1.75
32763413--32763497	41	2.0	41	88	2	125	28	7	7	57	1.51
32764678--32764757	33	2.4	33	82	0	97	31	16	22	30	1.96
32766106--32766145	20	2.0	20	85	0	53	42	7	2	47	1.45
32772333--32772412	33	2.4	33	89	0	115	31	13	23	31	1.93
32778957--32779088	33	4.0	33	81	2	140	34	18	21	25	1.96
32778957--32779088	66	2.0	66	82	2	158	34	18	21	25	1.96
32779993--32780068	31	2.6	29	71	19	75	28	7	6	56	1.53
32784859--32784957	33	3.1	32	71	20	82	50	2	0	47	1.12
32787533--32787593	5	12.4	5	94	3	79	0	65	0	34	0.93
32788562--32788598	4	9.2	4	87	0	56	0	54	18	27	1.44
32788562--32788598	12	3.1	12	96	0	65	0	54	18	27	1.44
32789974--32790098	17	7.3	17	80	4	135	41	2	4	52	1.33
32790097--32790134	15	2.6	15	91	4	60	52	13	5	28	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32791399--32791435	13	2.8	13	91	0	56	62	0	37	0	0.96
32791914--32792247	30	11.2	30	77	8	263	39	20	2	38	1.64
32791936--32792251	59	5.3	59	79	10	288	40	20	1	37	1.62
32792229--32792311	29	2.9	28	75	12	78	32	26	2	38	1.69
32791915--32792338	59	7.1	59	76	10	282	37	21	2	37	1.66
32792233--32792435	59	3.5	59	87	4	286	33	27	2	36	1.72
32792259--32792340	29	2.8	27	74	15	74	32	25	1	40	1.64
32792233--32792479	117	2.1	117	85	5	324	32	27	3	36	1.73
32792262--32792427	30	5.7	29	70	16	128	32	27	3	37	1.72
32792233--32792479	59	4.2	60	83	6	278	32	27	3	36	1.73

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143