genome.fa.s11.2.7.7.80.10.50.1000.96.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032255.1 Gossypioides kirkii chromosome KI_13
Parameters: 2 7 7 80 10 50 1000
Length:  42971368

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   

This is table  96  of  143  ( 17057 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29812366--29812554	34	5.6	34	79	5	215	32	19	15	32	1.93
29812366--29812553	101	1.9	100	83	5	245	32	19	15	32	1.93
29812759--29812796	20	1.9	20	89	10	60	42	5	15	36	1.70
29816756--29817235	123	3.9	125	87	4	674	39	10	6	43	1.66
29817266--29817660	141	2.8	140	84	3	499	27	19	21	32	1.97
29817676--29818160	36	13.4	36	82	7	538	26	23	14	36	1.93
29817676--29818160	73	6.7	72	80	9	508	26	23	14	36	1.93
29817676--29818160	109	4.5	108	83	6	549	26	23	14	36	1.93
29820399--29820441	21	2.2	18	84	12	50	30	2	6	60	1.35
29821885--29821960	38	2.0	38	85	7	102	48	10	7	32	1.66
29823174--29823212	17	2.3	17	86	8	53	43	0	0	56	0.99
29823559--29823614	28	2.0	29	89	3	87	53	0	3	42	1.18
29837280--29837319	16	2.5	17	84	12	57	65	0	2	32	1.06
29837274--29837317	14	3.0	14	86	6	52	59	0	2	38	1.10
29837573--29837606	14	2.2	16	90	10	54	52	2	0	44	1.16
29844574--29844598	12	2.1	12	100	0	50	24	16	8	52	1.70
29845356--29845430	6	13.0	6	70	13	59	42	1	2	53	1.23
29845356--29845408	23	2.3	23	80	0	61	39	0	3	56	1.17
29845339--29845430	17	5.4	17	80	7	107	42	1	3	53	1.24
29845442--29845489	19	2.6	18	87	6	69	58	14	4	22	1.54
29847181--29847631	29	15.6	30	70	16	231	36	25	4	34	1.76
29847335--29847666	58	5.8	57	77	10	291	36	25	3	34	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29849450--29849487	14	2.7	14	84	8	51	34	15	7	42	1.76
29851203--29851237	17	2.1	17	100	0	70	48	11	11	28	1.74
29854073--29854103	12	2.5	12	94	5	53	58	0	25	16	1.38
29865805--29865978	88	2.0	88	82	2	215	52	13	5	28	1.62
29876563--29876601	20	1.9	20	84	5	51	41	0	33	25	1.56
29877871--29877943	33	2.2	33	83	9	87	36	21	12	28	1.90
29882721--29882761	21	2.0	21	85	0	55	9	0	39	51	1.35
29883053--29883157	42	2.6	41	86	4	140	25	9	5	59	1.51
29886957--29887019	33	1.9	33	93	0	108	34	19	19	26	1.95
29886954--29887029	33	2.3	33	86	0	107	35	17	19	27	1.94
29889453--29889493	22	2.0	22	90	9	68	9	7	9	73	1.26
29890643--29890703	29	2.1	29	87	6	88	34	37	8	19	1.82
29893999--29894043	19	2.4	19	81	7	56	37	0	4	57	1.19
29898452--29898643	105	1.9	102	82	5	242	36	12	24	26	1.91
29899205--29899249	19	2.4	19	81	7	56	37	0	4	57	1.19
29910128--29910384	30	8.6	29	80	6	212	30	6	25	37	1.82
29911954--29912121	85	2.0	85	86	0	237	23	22	16	38	1.93
29911927--29912394	209	2.2	208	90	2	724	22	21	15	40	1.91
29912164--29912330	85	2.0	85	83	2	210	25	21	13	38	1.91
29912486--29912577	48	1.9	48	86	4	132	25	25	14	35	1.93
29912248--29912577	124	2.7	122	81	3	410	23	20	15	40	1.90
29912048--29912784	332	2.2	332	83	3	921	23	20	15	39	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29912695--29912872	48	4.0	47	74	18	155	24	22	16	36	1.94
29912703--29912864	85	1.9	85	88	5	247	24	23	15	37	1.93
29912380--29912958	208	2.8	207	85	2	750	23	20	16	39	1.92
29913169--29913665	198	2.5	198	79	0	510	20	27	15	37	1.92
29913161--29913645	99	4.9	99	78	2	436	20	27	15	36	1.92
29913678--29914269	99	6.0	99	82	3	627	20	28	15	35	1.93
29913550--29913820	142	1.9	142	83	3	357	21	31	12	34	1.91
29913457--29913908	241	1.9	241	84	3	606	21	30	13	34	1.92
29913362--29913994	340	1.9	340	83	2	831	21	29	14	34	1.93
29913699--29914269	196	2.9	198	82	4	695	20	29	14	35	1.92
29913700--29914269	295	1.9	297	85	2	797	20	28	14	35	1.92
29920223--29920351	60	2.2	60	80	8	138	37	6	23	31	1.81
29920239--29920500	60	4.4	60	73	7	178	35	6	21	36	1.80
29920236--29920500	119	2.2	118	77	7	266	35	6	21	36	1.79
29920327--29920442	29	3.9	29	77	3	106	32	6	22	38	1.79
29920236--29920496	30	8.8	29	73	8	125	35	6	21	36	1.80
29932182--29932253	16	4.5	16	77	3	74	37	5	27	29	1.79
29932183--29932253	32	2.2	32	87	0	97	38	5	26	29	1.79
29941739--29941780	7	5.7	7	86	8	57	2	16	0	80	0.81
29942497--29942547	24	2.1	25	81	3	59	5	25	13	54	1.61
29957314--29957358	22	2.0	22	83	8	56	48	11	15	24	1.77
29958430--29958471	21	2.0	21	90	0	66	19	14	33	33	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29967276--29967411	68	2.0	68	98	0	263	29	9	19	41	1.83
29968385--29968462	27	2.9	27	88	7	106	20	20	25	33	1.97
29968539--29968596	27	2.1	27	84	6	73	27	20	24	27	1.99
29971352--29971398	25	2.0	24	84	16	62	59	2	0	38	1.09
29971893--29971933	19	2.2	19	86	4	57	58	7	0	34	1.26
29971930--29972005	39	2.0	38	84	7	100	59	3	1	35	1.24
29971919--29972005	39	2.3	36	77	14	86	58	3	1	36	1.22
29972668--29972718	22	2.3	21	83	6	57	15	3	11	68	1.34
29974487--29974557	26	2.7	27	84	4	90	18	35	21	25	1.95
29976414--29976467	11	5.0	10	80	10	54	40	0	1	57	1.09
29976408--29976469	6	11.0	6	76	13	60	41	0	3	54	1.16
29976406--29976469	34	1.9	33	96	3	119	42	0	3	54	1.16
29976406--29976469	17	3.8	17	87	2	94	42	0	3	54	1.16
29978128--29978238	30	3.7	29	86	4	150	36	27	3	32	1.74
29985894--29985977	30	2.8	30	77	15	86	34	20	5	39	1.77
29985936--29985995	29	2.1	29	81	6	68	35	20	3	41	1.68
29987235--29987298	29	2.3	28	94	5	112	40	10	0	48	1.38
29987248--29987313	16	4.3	16	75	11	75	37	12	0	50	1.40
29989371--29989766	41	9.7	41	80	6	419	33	19	28	18	1.96
29989383--29989836	82	5.5	83	82	3	474	32	19	28	19	1.96
29989371--29989836	41	11.4	41	79	4	406	32	19	28	18	1.96
29990212--29990257	17	2.7	18	77	9	53	0	45	0	54	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29994879--29995018	43	3.3	42	82	5	165	22	12	30	35	1.90
29995000--29995041	19	2.2	19	91	0	66	14	11	30	42	1.81
29995019--29995164	42	3.4	43	84	1	188	26	15	30	27	1.96
30003823--30003857	18	1.9	18	88	0	52	71	2	14	11	1.25
30008205--30008242	19	2.1	19	90	5	60	65	10	7	15	1.45
30027883--30027984	42	2.4	42	85	4	134	50	16	22	9	1.74
30028554--30028655	42	2.4	43	85	4	127	9	22	17	50	1.75
30028554--30028643	43	2.1	43	87	8	130	8	21	17	52	1.72
30031477--30031643	80	2.1	80	100	0	334	29	10	19	40	1.85
30052604--30052681	6	11.8	6	83	12	66	20	3	1	74	1.05
30054273--30054315	22	2.0	22	81	9	52	48	4	0	46	1.22
30054416--30054467	7	7.8	6	79	14	50	13	0	34	51	1.41
30054415--30054467	20	2.7	20	82	5	63	13	0	35	50	1.41
30054939--30054975	18	2.1	18	95	5	67	35	16	21	27	1.94
30056314--30056354	18	2.3	18	86	0	55	9	14	4	70	1.30
30058627--30058676	27	1.9	25	84	15	66	36	12	4	48	1.59
30068766--30068797	13	2.5	13	95	5	57	78	0	21	0	0.76
30070923--30071099	52	3.4	52	83	9	218	37	22	13	26	1.91
30072882--30072921	16	2.4	17	87	4	55	45	10	0	45	1.37
30074282--30074307	2	13.0	2	100	0	52	50	0	0	50	1.00
30076290--30076580	52	5.6	52	84	4	338	36	24	12	26	1.91
30081826--30082058	52	4.5	52	83	4	292	34	23	15	26	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30081826--30082061	103	2.3	104	88	3	352	34	23	15	25	1.95
30095031--30095089	30	2.0	30	96	0	109	35	11	16	35	1.86
30103032--30103066	18	1.9	18	88	0	52	48	5	11	34	1.63
30103527--30103564	11	3.5	11	86	13	53	28	0	0	71	0.87
30104515--30104584	21	3.3	21	82	7	88	30	25	14	30	1.95
30120583--30120617	10	3.5	10	88	0	52	0	14	0	85	0.59
30121166--30121213	20	2.5	19	77	12	53	39	6	12	41	1.68
30123932--30123966	7	5.0	7	92	0	61	54	0	45	0	0.99
30145227--30145264	16	2.3	16	83	16	51	81	0	15	2	0.80
30146807--30146865	24	2.5	24	80	5	66	27	13	8	50	1.70

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143