genome.fa.s11.2.7.7.80.10.50.1000.57.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032255.1 Gossypioides kirkii chromosome KI_13
Parameters: 2 7 7 80 10 50 1000
Length:  42971368

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   

This is table  57  of  143  ( 17057 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18301878--18303063	587	2.0	588	81	4	1410	26	17	15	39	1.90
18302456--18303400	215	4.4	215	78	6	928	27	17	15	40	1.89
18303439--18304022	215	2.7	215	82	4	714	28	15	14	40	1.87
18304707--18304851	74	2.0	74	94	0	254	37	15	13	33	1.86
18307989--18308126	50	2.7	51	80	9	156	36	11	16	34	1.85
18308321--18308353	17	1.9	17	88	11	50	66	6	0	27	1.15
18309704--18309766	32	2.0	32	83	0	81	38	17	9	34	1.82
18314251--18314294	18	2.4	18	88	7	63	20	9	4	65	1.38
18314250--18314293	19	2.4	19	84	3	63	20	6	4	68	1.31
18317816--18317852	18	2.1	18	89	0	56	27	24	10	37	1.88
18320404--18320459	24	2.3	24	90	0	85	5	19	7	67	1.34
18322789--18323958	214	5.5	210	79	7	1155	41	13	16	28	1.87
18322789--18323958	429	2.7	425	81	5	1324	41	13	16	28	1.87
18323773--18324135	179	2.0	177	85	6	484	38	14	19	27	1.91
18330548--18330595	21	2.3	21	82	7	62	6	35	2	56	1.36
18340986--18341204	23	9.7	23	83	5	261	47	12	4	36	1.62
18341098--18341135	19	2.0	19	89	0	58	47	7	7	36	1.62
18340986--18341204	88	2.5	88	85	3	305	47	12	4	36	1.62
18340986--18341180	65	2.9	65	88	3	275	47	12	4	35	1.62
18342742--18342992	23	10.9	23	85	0	313	47	12	3	36	1.59
18344354--18344602	23	10.8	23	87	0	320	45	14	5	34	1.67
18352194--18352433	23	10.7	23	83	6	269	46	11	5	37	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18352353--18352385	17	1.9	17	93	0	57	42	9	6	42	1.61
18356322--18356572	23	10.9	23	87	2	326	46	13	3	36	1.60
18356322--18356572	69	3.6	69	87	2	369	46	13	3	36	1.60
18366823--18366852	13	2.4	12	89	10	51	16	10	0	73	1.09
18370506--18370539	17	2.0	17	88	0	50	44	5	29	20	1.75
18374236--18374309	11	6.4	11	69	17	51	72	1	21	4	1.08
18382738--18382959	73	3.1	73	92	4	346	43	6	20	29	1.77
18392272--18392430	80	2.0	79	92	1	264	35	22	14	27	1.93
18398457--18398551	32	3.0	32	95	0	163	38	18	11	30	1.87
18398597--18398695	39	2.5	39	96	0	180	54	15	5	25	1.61
18405924--18406080	80	2.0	79	89	1	242	35	19	14	31	1.91
18410627--18410661	16	2.1	17	89	5	54	40	11	8	40	1.72
18420372--18420491	48	2.5	48	94	1	206	51	15	9	24	1.71
18426961--18427082	48	2.5	48	89	2	183	24	9	12	54	1.66
18426961--18427097	48	2.9	47	82	8	129	25	10	12	51	1.70
18427524--18427681	82	2.0	78	90	5	244	35	21	15	27	1.93
18433651--18433781	50	2.6	50	84	6	156	36	12	15	35	1.85
18433983--18434015	17	1.9	17	88	11	50	66	6	0	27	1.15
18451594--18451694	5	20.6	5	83	6	109	2	19	1	75	1.03
18452224--18452373	74	2.0	74	88	0	219	37	16	13	32	1.88
18480648--18480899	127	2.0	127	96	0	468	38	10	28	23	1.87
18481709--18481755	17	2.9	17	81	6	62	21	10	27	40	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18490382--18490436	23	2.3	23	90	3	83	1	20	5	72	1.13
18512845--18512878	14	2.5	13	86	9	50	79	11	8	0	0.94
18519195--18519259	32	2.0	32	87	0	94	47	10	13	27	1.76
18521268--18521313	22	2.1	22	87	0	65	39	13	30	17	1.87
18521443--18521491	17	2.9	17	84	3	55	48	8	8	34	1.62
18521457--18521491	16	2.1	17	89	5	54	54	5	5	34	1.48
18525679--18526260	293	2.0	293	97	0	1110	34	19	24	21	1.96
18526618--18526653	18	2.0	18	100	0	72	33	33	5	27	1.80
18527964--18527992	2	14.5	2	100	0	58	51	0	0	48	1.00
18528761--18528800	16	2.4	17	79	4	55	47	5	0	47	1.24
18532130--18532195	16	3.8	16	70	18	51	13	24	31	30	1.94
18532146--18532216	21	3.7	20	71	21	62	12	22	32	32	1.92
18532126--18532382	37	6.9	37	87	0	363	15	18	30	36	1.91
18533560--18533848	37	7.8	37	87	0	391	16	17	28	37	1.92
18535051--18535095	21	2.2	20	84	11	56	28	15	13	42	1.85
18545304--18545345	22	1.9	22	90	0	66	47	4	21	26	1.70
18546722--18546765	22	2.0	22	86	0	61	50	4	15	29	1.64
18548977--18549011	3	11.7	3	100	0	70	68	0	0	31	0.90
18554402--18554456	15	3.5	16	78	7	60	32	3	1	61	1.24
18557438--18557483	17	2.7	17	96	0	83	52	13	17	17	1.75
18566468--18567759	663	1.9	663	96	0	2413	32	20	16	30	1.95
18570504--18570675	63	2.9	58	86	9	254	45	0	2	51	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18573090--18573151	24	2.5	24	89	2	88	29	22	12	35	1.91
18577951--18578061	50	2.2	50	82	6	136	33	18	24	24	1.97
18578086--18578412	40	8.2	41	73	12	220	29	24	20	25	1.99
18578244--18578432	39	4.8	39	70	11	120	29	23	18	28	1.98
18578083--18578432	79	4.4	79	82	4	400	29	24	20	26	1.99
18578129--18578432	158	1.9	159	87	2	441	28	24	19	27	1.99
18580866--18580985	58	2.1	58	90	3	188	31	0	20	48	1.50
18581904--18581940	14	2.6	14	91	4	56	13	0	5	81	0.86
18582276--18582325	17	2.7	18	80	17	57	74	0	0	26	0.83
18582296--18582337	17	2.3	19	88	8	61	64	0	0	35	0.94
18582282--18582377	17	5.7	16	73	21	56	59	1	2	37	1.16
18582293--18582381	19	4.8	20	75	19	66	57	1	2	39	1.19
18582370--18582394	12	2.1	12	100	0	50	76	0	0	24	0.80
18582366--18582405	21	1.9	21	90	10	64	67	0	2	30	1.04
18582681--18582756	30	2.6	29	79	6	89	35	2	2	59	1.25
18582678--18582758	31	2.7	30	78	14	94	37	2	2	58	1.25
18582565--18582767	10	20.7	10	66	16	77	29	2	3	64	1.25
18583245--18583298	26	2.1	26	85	0	72	24	11	9	55	1.64
18589856--18589881	12	2.2	12	100	0	52	76	0	7	15	0.99
18594535--18594609	23	3.3	23	66	17	66	60	9	6	24	1.52
18594560--18594674	22	5.1	22	65	12	72	57	13	6	23	1.58
18594543--18594679	45	3.0	45	97	0	256	57	13	5	23	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18594708--18594749	21	2.0	21	90	0	66	66	19	2	11	1.34
18598632--18598682	27	1.9	27	88	4	77	25	15	33	25	1.95
18598664--18598920	59	4.4	59	89	0	363	34	4	30	31	1.77
18598765--18598917	29	5.2	30	73	17	142	33	3	29	33	1.74
18599195--18599269	33	2.3	34	79	9	84	57	10	14	17	1.65
18600007--18600058	3	17.3	3	100	0	104	34	0	0	65	0.93
18600772--18600816	18	2.6	18	96	3	83	57	0	0	42	0.98
18600740--18600816	6	12.8	6	70	15	52	53	1	3	41	1.27
18600778--18600817	11	4.0	11	75	24	52	60	0	0	40	0.97
18601995--18602105	58	1.9	59	90	1	179	23	16	12	47	1.80
18602928--18602966	8	4.8	8	96	3	69	35	25	0	38	1.56
18604378--18604415	20	1.9	20	88	0	58	36	5	5	52	1.47
18605516--18605587	35	2.1	35	94	0	126	30	18	8	43	1.79
18620707--18620736	15	2.0	15	100	0	60	26	33	6	33	1.83
18621100--18621248	28	5.4	28	80	6	169	24	12	24	38	1.90
18621113--18621248	55	2.5	56	84	6	179	27	11	22	38	1.89
18624478--18624939	158	2.9	157	89	0	681	20	23	25	30	1.98
18629420--18629457	8	4.6	8	81	18	51	68	0	0	31	0.90
18629416--18629466	10	5.8	9	84	15	63	62	1	0	35	1.06
18629733--18630073	175	1.9	179	84	5	462	36	19	10	34	1.86
18630209--18630294	29	3.0	27	75	8	73	58	1	8	32	1.35
18630518--18630665	9	15.4	9	66	14	64	34	2	3	59	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18630529--18630641	19	5.9	19	68	15	72	38	2	2	55	1.28
18630518--18630659	38	3.7	38	73	14	121	35	2	2	58	1.27
18630595--18630657	10	6.6	10	71	10	51	34	3	1	60	1.22
18630595--18630659	19	3.4	18	79	10	60	35	3	1	60	1.22
18631412--18631472	32	1.9	32	96	0	113	6	13	6	73	1.22
18637974--18638022	18	2.6	19	90	3	73	4	16	16	63	1.46
18638164--18638567	201	2.0	202	92	0	666	36	15	18	30	1.91
18639729--18639780	17	2.9	17	75	16	52	44	36	5	13	1.68
18639855--18639881	14	1.9	14	100	0	54	22	44	22	11	1.84
18653369--18653789	195	2.2	196	88	2	623	39	19	24	17	1.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143