genome.fa.s11.2.7.7.80.10.50.1000.56.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032255.1 Gossypioides kirkii chromosome KI_13
Parameters: 2 7 7 80 10 50 1000
Length:  42971368

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   

This is table  56  of  143  ( 17057 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18022894--18022952	15	4.2	14	81	14	68	1	13	3	81	0.90
18022894--18022947	23	2.1	27	87	12	80	1	12	3	81	0.91
18024146--18024265	48	2.5	48	91	0	186	53	15	7	24	1.67
18026031--18026290	129	2.0	129	100	0	520	30	25	13	30	1.94
18030680--18030800	48	2.5	48	91	1	188	52	14	9	23	1.69
18040396--18040443	21	2.3	21	82	7	62	56	2	35	6	1.36
18046870--18047238	181	2.0	181	87	2	535	27	18	14	39	1.90
18046679--18047453	396	2.0	396	86	0	1102	27	17	15	40	1.89
18047051--18048361	215	6.1	216	80	4	1321	28	16	13	41	1.87
18048185--18048537	182	1.9	182	83	4	453	30	17	13	37	1.88
18050406--18051176	215	3.6	214	80	5	869	26	18	14	39	1.90
18051193--18052147	214	4.4	217	78	8	880	27	17	14	40	1.89
18052154--18052750	215	2.8	216	82	5	744	28	16	14	41	1.87
18053436--18053580	74	2.0	74	94	0	254	37	15	13	33	1.86
18057041--18057073	17	1.9	17	88	11	50	66	6	0	27	1.15
18058413--18058475	32	2.0	32	83	0	81	38	17	9	34	1.82
18058702--18059054	182	1.9	182	82	4	435	30	18	13	37	1.89
18062187--18062253	18	3.8	17	76	5	53	19	10	2	67	1.34
18063466--18063563	38	2.6	38	98	0	187	52	17	5	25	1.65
18063488--18063549	19	3.3	19	64	8	54	51	14	4	29	1.63
18065792--18065828	18	2.1	18	89	0	56	27	24	10	37	1.88
18068386--18068440	23	2.3	24	87	3	76	5	20	7	67	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18070532--18071304	218	3.6	214	79	6	823	27	18	14	39	1.89
18071321--18072124	218	3.7	214	78	8	605	27	17	14	39	1.90
18071310--18072874	432	3.7	426	74	11	1082	28	16	15	40	1.89
18072278--18072869	216	2.8	212	82	6	703	28	16	14	40	1.88
18073555--18073699	74	2.0	74	94	0	254	37	15	13	33	1.86
18077158--18077190	17	1.9	17	88	11	50	66	6	0	27	1.15
18078530--18078592	32	2.0	32	83	0	81	38	17	9	34	1.82
18078819--18079171	182	1.9	182	82	4	435	30	18	13	37	1.89
18082303--18082369	18	3.8	17	76	5	53	19	10	2	67	1.34
18083582--18083679	38	2.6	38	98	0	187	52	17	5	25	1.65
18083604--18083665	19	3.3	19	64	8	54	51	14	4	29	1.63
18085909--18085945	18	2.1	18	89	0	56	27	24	10	37	1.88
18088500--18088555	24	2.3	24	90	0	85	5	19	7	67	1.34
18092182--18092253	23	3.0	25	79	8	85	4	16	4	75	1.12
18092197--18092252	28	2.0	28	89	0	85	0	14	5	80	0.88
18092181--18092255	5	15.4	5	88	2	73	4	16	4	76	1.10
18094657--18094691	15	2.3	15	90	9	54	28	28	22	20	1.98
18100178--18100224	20	2.3	20	96	0	85	29	38	12	19	1.89
18101694--18101773	15	5.3	15	82	5	76	27	20	25	27	1.99
18102905--18108600	215	26.6	215	77	8	3964	28	16	14	40	1.88
18102905--18108599	430	13.3	429	81	5	5686	28	16	14	40	1.88
18104190--18104565	188	2.0	190	83	7	487	28	18	13	38	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18104382--18108600	215	19.6	216	81	4	4358	28	16	14	40	1.88
18109060--18109223	80	2.1	79	90	2	258	26	15	21	35	1.93
18109656--18109778	48	2.6	48	94	0	210	52	14	8	24	1.70
18109908--18109949	22	1.9	22	85	0	57	64	7	0	28	1.20
18110071--18110129	15	3.9	16	78	8	63	22	20	32	25	1.98
18115631--18115684	23	2.3	24	80	3	56	72	3	18	5	1.20
18124968--18125002	15	2.3	15	90	9	54	28	28	22	20	1.98
18130494--18130540	20	2.3	20	88	0	76	31	38	10	19	1.86
18131962--18132047	45	1.9	45	81	9	104	30	19	24	25	1.98
18131995--18132090	30	3.2	30	70	16	99	31	22	22	22	1.99
18131978--18132120	60	2.4	60	83	4	173	29	21	24	24	1.99
18133251--18138947	215	26.6	216	78	7	4428	28	16	14	40	1.88
18133251--18138947	648	8.9	646	82	5	6012	28	16	14	40	1.88
18134536--18134911	188	2.0	191	84	7	498	28	18	14	38	1.89
18139419--18139575	80	2.0	79	89	1	242	26	15	23	34	1.94
18140008--18140130	48	2.6	48	94	0	210	52	14	8	24	1.70
18140260--18140301	22	1.9	22	85	0	57	64	7	0	28	1.20
18140444--18141625	215	5.5	215	85	4	1501	28	15	14	40	1.87
18140444--18141625	431	2.8	426	85	4	1538	28	15	14	40	1.87
18141674--18141747	15	4.9	16	74	12	68	22	21	31	24	1.99
18147258--18147311	23	2.3	24	80	3	56	72	3	18	5	1.20
18150086--18150164	15	5.3	15	70	7	54	25	24	22	27	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18150097--18150170	30	2.5	30	75	0	76	22	24	24	28	2.00
18150135--18150173	15	2.6	15	79	0	51	23	33	23	20	1.97
18162990--18163039	24	2.1	24	84	0	64	8	18	2	72	1.19
18164955--18165074	48	2.5	48	93	0	195	24	9	14	52	1.70
18171402--18171521	48	2.5	48	90	0	177	23	7	15	53	1.67
18171402--18171542	48	3.0	46	83	5	142	23	8	15	52	1.70
18172710--18172769	5	12.4	5	77	19	65	80	3	15	1	0.93
18172713--18172772	14	4.2	14	83	10	77	81	3	13	1	0.89
18172710--18172769	24	2.5	24	89	8	95	80	3	15	1	0.93
18180459--18180538	15	5.3	15	71	5	63	23	28	22	25	1.99
18180459--18180541	30	2.8	30	73	0	94	25	28	21	24	1.99
18180632--18181893	216	5.8	216	82	4	1395	29	16	14	40	1.87
18180632--18181892	651	1.9	650	83	4	1641	29	16	14	40	1.87
18181907--18184135	217	10.3	216	83	4	2466	39	15	16	27	1.89
18181907--18184135	433	5.2	431	83	5	2521	39	15	16	27	1.89
18186995--18188272	216	6.0	217	79	7	1326	40	15	16	28	1.88
18186995--18188274	431	3.0	425	81	6	1378	40	15	16	28	1.88
18188284--18190950	216	12.4	216	81	5	2678	40	15	16	27	1.89
18188284--18190950	430	6.2	431	81	6	2682	40	15	16	27	1.89
18191295--18191423	48	2.6	49	90	3	181	24	10	13	52	1.70
18191308--18191423	48	2.4	48	92	0	187	24	9	12	53	1.68
18196086--18196198	48	2.4	48	90	3	174	52	14	9	23	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18202672--18202793	48	2.6	48	93	1	201	24	9	14	50	1.73
18208738--18209041	151	2.0	151	100	0	608	27	15	15	42	1.87
18221964--18222062	39	2.5	39	98	0	189	25	5	16	53	1.63
18222108--18222202	32	3.0	32	95	0	163	30	11	18	38	1.87
18228193--18228351	80	2.0	79	90	3	248	27	15	21	35	1.93
18239621--18239687	31	2.3	28	76	7	71	4	23	1	70	1.14
18243390--18243423	17	2.0	17	88	0	50	20	29	5	44	1.75
18247077--18247106	13	2.4	12	89	10	51	73	0	10	16	1.09
18254428--18254963	268	2.0	267	90	1	840	28	13	18	38	1.89
18256364--18256827	234	2.0	234	92	0	777	45	14	20	19	1.85
18261604--18261852	23	10.8	23	87	0	320	34	5	14	45	1.67
18263211--18263461	23	10.9	23	85	0	304	36	3	11	47	1.58
18264999--18265217	23	9.7	23	82	5	252	35	4	12	47	1.62
18264999--18265213	65	3.2	65	84	5	261	35	4	12	47	1.61
18264999--18265217	88	2.4	90	84	3	291	35	4	12	47	1.62
18268823--18268870	24	2.0	24	100	0	96	33	20	16	29	1.95
18276628--18276662	18	1.9	18	88	11	54	11	14	0	74	1.08
18279652--18279990	181	1.9	181	91	0	561	27	18	14	39	1.90
18279461--18280235	396	2.0	396	86	1	1104	26	17	15	40	1.89
18279833--18281143	215	6.1	215	80	4	1356	28	16	13	41	1.87
18280967--18281299	182	1.8	182	83	5	440	31	17	13	38	1.88
18283205--18283979	215	3.6	215	80	4	900	26	18	14	39	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18283985--18284932	216	4.4	214	77	7	903	27	17	14	40	1.89
18284958--18285553	215	2.8	215	82	5	740	28	16	14	40	1.87
18286238--18286382	74	2.0	74	94	0	254	37	15	13	33	1.86
18289844--18289876	17	1.9	17	88	11	50	66	6	0	27	1.15
18291213--18291275	32	2.0	32	83	0	81	38	17	9	34	1.82
18298171--18298539	181	2.0	181	87	2	535	27	18	14	39	1.90
18297980--18298754	396	2.0	396	86	0	1102	27	17	15	40	1.89
18298352--18299662	215	6.1	216	80	4	1321	28	16	13	41	1.87
18299486--18299838	182	1.9	182	83	4	453	30	17	13	37	1.88
18301775--18302450	215	3.1	215	80	4	826	27	17	15	39	1.90

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143