genome.fa.s11.2.7.7.80.10.50.1000.104.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032255.1 Gossypioides kirkii chromosome KI_13
Parameters: 2 7 7 80 10 50 1000
Length:  42971368

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   

This is table  104  of  143  ( 17057 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31913970--31914027	23	2.5	24	83	5	75	51	3	0	44	1.18
31913957--31914023	17	3.9	17	82	7	73	50	1	0	47	1.10
31913971--31914023	12	4.6	11	86	4	61	50	1	0	47	1.12
31914834--31915652	100	8.2	100	85	2	1022	13	25	21	39	1.90
31914836--31915297	50	9.3	49	67	16	161	13	25	22	38	1.90
31927271--31927362	29	3.2	29	71	20	84	41	5	27	26	1.77
31927281--31927668	29	13.5	28	70	19	205	39	2	25	32	1.70
31927243--31927650	173	2.4	174	87	4	558	39	2	26	31	1.71
31927243--31927650	58	7.1	58	86	5	490	39	2	26	31	1.71
31927444--31927748	29	10.5	29	71	15	141	40	1	22	34	1.65
31929614--31929659	11	4.0	11	81	10	56	54	6	0	39	1.26
31929613--31929659	24	2.0	24	87	4	69	53	6	0	40	1.27
31931508--31931565	31	1.9	30	82	10	73	43	1	24	31	1.64
31931521--31931621	31	3.3	29	76	14	89	42	6	24	25	1.79
31947834--31947898	15	4.4	15	75	11	62	58	3	0	38	1.14
31947863--31947900	16	2.4	17	82	13	53	63	0	0	36	0.95
31948009--31948044	18	2.1	18	89	5	56	47	2	0	50	1.15
31953834--31953934	48	2.1	48	92	0	166	38	15	5	39	1.72
31958198--31958240	11	3.9	11	76	11	52	34	0	0	65	0.93
31958191--31958238	21	2.2	22	85	3	62	39	0	0	60	0.97
31958255--31958311	24	2.4	24	81	0	69	35	0	0	64	0.93
31959371--31959419	11	4.5	11	86	0	71	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31960104--31960146	12	3.5	12	90	6	59	39	0	60	0	0.97
31960104--31960144	13	3.2	13	86	3	57	41	0	58	0	0.98
31960183--31960267	38	2.3	37	84	10	102	45	0	1	52	1.08
31960186--31960271	20	4.4	18	69	23	59	46	0	1	52	1.08
31960687--31960718	9	3.6	9	91	0	55	78	0	21	0	0.76
31961048--31961078	16	1.9	16	100	0	62	12	22	19	45	1.84
31961871--31961919	21	2.3	21	92	0	89	12	22	28	36	1.90
31963454--31963501	2	23.5	2	95	4	87	50	0	2	47	1.12
31963783--31963857	40	1.9	39	83	5	98	45	1	20	33	1.59
31970657--31970704	2	23.5	2	95	4	87	50	0	2	47	1.12
31975686--31975749	27	2.3	26	84	12	76	46	4	3	45	1.39
32008494--32008519	2	13.0	2	100	0	52	50	0	0	50	1.00
32009308--32009462	83	1.9	82	95	1	283	46	15	5	32	1.70
32022275--32022323	19	2.7	18	84	12	64	67	22	4	6	1.30
32027215--32027254	17	2.3	18	86	4	55	67	7	5	20	1.34
32031309--32031349	15	2.6	15	88	7	55	70	0	4	24	1.06
32031323--32031387	20	3.3	19	72	18	60	63	1	3	32	1.19
32032131--32032199	31	2.3	31	82	7	79	26	10	13	50	1.72
32032873--32032898	12	2.2	12	100	0	52	38	0	0	61	0.96
32040204--32040245	13	3.3	13	83	6	59	11	4	9	73	1.22
32040204--32040245	12	3.4	12	86	3	57	11	4	9	73	1.22
32040193--32040272	24	3.3	24	77	5	72	11	5	13	70	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32043298--32043336	14	2.7	15	80	8	53	56	10	7	25	1.59
32043716--32043761	24	1.9	25	86	8	69	54	6	4	34	1.46
32046967--32047010	4	11.0	4	100	0	88	25	0	25	50	1.50
32047062--32047099	3	12.7	3	100	0	76	68	0	0	31	0.90
32048698--32048805	6	18.0	6	75	14	89	49	0	1	48	1.18
32048698--32048774	17	4.4	17	76	15	77	44	0	2	53	1.14
32048688--32048774	11	7.5	11	72	18	61	43	0	3	52	1.18
32048725--32048805	31	2.6	30	80	9	83	53	1	1	44	1.16
32048834--32048872	12	2.9	14	81	14	55	38	28	17	15	1.91
32049472--32049508	15	2.5	15	90	0	56	62	5	2	29	1.31
32050275--32050589	158	2.0	162	86	6	446	25	16	12	46	1.81
32050275--32050639	158	2.3	158	82	8	393	23	17	14	43	1.86
32050683--32050846	29	5.6	28	70	12	89	36	26	1	35	1.67
32050738--32051055	59	5.4	59	87	1	458	32	30	4	33	1.78
32050737--32051093	118	3.0	117	82	6	427	30	30	5	33	1.81
32052322--32052542	62	3.6	63	82	3	261	30	15	13	41	1.85
32052597--32052652	17	3.3	17	87	0	76	37	3	3	55	1.35
32054600--32054831	30	7.9	30	77	6	206	37	18	2	41	1.63
32054600--32054831	59	4.0	57	86	7	306	37	18	2	41	1.63
32054806--32054943	58	2.4	58	85	4	172	34	26	3	36	1.74
32054801--32054943	29	4.9	29	68	24	72	32	25	3	37	1.73
32058510--32058559	21	2.5	20	87	6	66	30	6	2	62	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32058522--32058561	19	2.0	21	85	9	57	35	5	2	57	1.34
32058575--32058599	13	1.9	13	100	0	50	36	8	0	56	1.29
32058530--32058645	59	2.0	56	83	11	146	40	7	2	49	1.45
32058724--32058748	13	1.9	13	100	0	50	36	8	0	56	1.29
32059858--32059921	24	2.7	23	88	7	85	28	6	1	64	1.27
32059854--32059921	23	3.0	23	85	8	86	27	5	1	64	1.25
32059859--32059935	24	3.2	24	83	12	79	27	5	1	66	1.21
32060786--32061028	62	4.0	60	82	10	282	36	15	16	31	1.90
32060793--32061029	122	2.0	121	89	5	372	37	15	16	31	1.90
32060980--32061076	47	2.0	48	84	5	126	39	10	18	31	1.84
32061028--32061177	59	2.5	58	81	5	192	45	12	14	27	1.81
32061087--32061263	87	2.1	87	88	4	261	44	14	13	27	1.83
32070659--32070686	3	9.3	3	100	0	56	32	0	0	67	0.91
32072861--32072893	3	11.0	3	100	0	66	33	0	0	66	0.92
32079130--32079167	2	18.5	2	94	5	67	47	0	2	50	1.15
32084637--32084695	31	1.9	32	89	6	95	38	10	5	45	1.60
32084778--32084853	23	3.1	23	68	17	71	44	11	17	26	1.83
32084755--32084853	51	1.9	51	100	0	198	42	12	19	26	1.86
32084755--32084840	28	3.2	28	71	15	101	39	12	19	27	1.88
32085549--32085639	28	3.3	27	82	10	87	47	4	20	27	1.69
32089838--32089997	85	1.9	84	92	1	266	45	6	11	36	1.67
32094834--32094928	30	3.2	30	76	11	81	36	5	22	35	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32094933--32094998	29	2.3	29	83	0	78	33	3	30	33	1.73
32095043--32095301	29	8.9	29	74	9	165	36	1	25	36	1.66
32095063--32095202	56	2.4	59	85	4	180	37	0	27	35	1.62
32096887--32096971	17	5.0	17	86	0	125	57	2	1	38	1.19
32096886--32096970	6	14.8	6	70	14	63	56	2	1	40	1.20
32097397--32097741	39	8.8	39	75	9	290	25	20	30	23	1.99
32097397--32097699	78	3.9	78	86	1	410	24	21	31	22	1.98
32097403--32097741	78	4.3	78	84	4	396	25	20	30	23	1.98
32097725--32097816	41	2.2	41	88	3	132	32	14	19	33	1.92
32098050--32098498	50	9.1	49	75	6	309	18	29	17	34	1.94
32098171--32098499	149	2.2	148	81	6	371	18	30	17	34	1.94
32103962--32104185	51	4.3	51	87	2	304	33	15	22	28	1.95
32109718--32109767	6	8.7	6	75	16	52	40	0	4	56	1.18
32109713--32109781	17	4.1	17	88	0	102	39	0	4	56	1.19
32109700--32109779	34	2.4	34	83	6	92	37	2	5	55	1.35
32110840--32110879	20	2.0	20	90	0	62	27	22	45	5	1.73
32111221--32111558	162	2.1	162	96	0	613	26	17	13	42	1.86
32111629--32111823	59	3.3	59	83	6	259	33	29	3	32	1.75
32111628--32111723	30	3.2	30	68	26	78	35	28	3	33	1.73
32111671--32111823	30	5.1	29	67	26	88	32	29	4	33	1.78
32113159--32113201	18	2.4	18	88	7	61	65	0	0	34	0.93
32113671--32113709	20	2.0	20	89	0	60	41	0	7	51	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32117570--32117855	144	2.0	143	91	3	459	24	17	14	44	1.86
32140764--32140818	3	19.7	3	78	14	55	25	1	3	69	1.15
32140763--32140820	11	5.3	11	87	0	89	24	1	3	70	1.12
32140763--32140829	22	3.0	21	82	8	80	26	1	2	68	1.12
32141747--32141809	21	3.2	21	60	17	53	33	12	25	28	1.92
32141742--32141818	38	2.0	38	100	0	154	31	12	27	28	1.93
32152303--32152328	2	13.0	2	100	0	52	50	0	0	50	1.00
32152916--32152949	17	1.9	18	88	5	52	64	0	26	8	1.22
32155053--32155201	42	3.6	41	90	3	219	23	25	10	40	1.87
32157837--32157874	19	2.0	19	89	0	58	42	0	7	50	1.31

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143