genome.fa.s11.2.7.7.80.10.50.1000.52.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032255.1 Gossypioides kirkii chromosome KI_13
Parameters: 2 7 7 80 10 50 1000
Length:  42971368

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   

This is table  52  of  143  ( 17057 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16886792--16886849	12	5.1	12	70	19	52	24	0	3	72	1.00
16886792--16886853	27	2.3	27	83	13	74	24	0	3	72	0.99
16887020--16887100	25	3.2	24	77	10	72	27	3	4	64	1.31
16892122--16892194	27	2.6	28	82	6	87	24	16	26	32	1.96
16892215--16892304	28	3.2	27	67	22	69	27	16	25	30	1.97
16892176--16892397	56	4.0	56	88	1	313	23	18	26	31	1.97
16895602--16895765	56	2.9	56	81	4	206	24	13	26	35	1.92
16904133--16904684	274	2.0	274	92	0	926	32	22	18	26	1.97
16908173--16908215	21	2.0	22	82	13	54	32	16	2	48	1.58
16910013--16910299	53	5.5	53	87	1	339	33	23	16	25	1.96
16916461--16916508	21	2.3	21	85	0	60	31	25	12	31	1.92
16917239--16917424	52	3.6	52	83	2	230	36	26	12	24	1.92
16917239--16917536	53	5.7	51	79	5	240	34	23	14	26	1.94
16917272--16917535	106	2.5	103	81	5	273	35	21	14	28	1.93
16918840--16919035	60	3.3	60	87	1	268	36	20	21	20	1.95
16918948--16919035	20	4.4	20	76	0	86	34	22	23	19	1.97
16922808--16922859	27	1.9	27	96	0	95	28	5	21	44	1.75
16926369--16926416	22	2.3	20	76	13	53	41	4	16	37	1.68
16928172--16928214	20	2.2	20	87	8	61	18	2	23	55	1.54
16937988--16938019	16	2.0	16	93	0	55	28	18	28	25	1.98
16938794--16938845	18	2.9	18	91	2	79	19	23	9	48	1.78
16947783--16947821	17	2.3	17	90	0	60	46	12	15	25	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16958068--16958627	49	11.4	49	73	9	471	37	18	25	18	1.93
16958011--16958683	49	13.8	49	70	12	339	38	18	25	17	1.93
16958011--16958666	98	6.7	98	89	2	917	38	17	25	18	1.93
16958937--16959337	78	5.2	77	82	3	412	25	29	17	26	1.98
16958935--16959337	39	10.4	40	71	9	219	25	29	17	27	1.98
16958937--16959337	156	2.6	156	82	2	491	25	29	17	26	1.98
16977625--16977662	19	2.0	19	89	0	58	36	2	2	57	1.26
16984438--16984534	43	2.3	42	78	5	106	36	10	26	26	1.89
16984522--16984630	42	2.5	42	83	5	130	37	10	25	26	1.88
16987214--16987656	195	2.3	196	89	1	692	29	18	25	26	1.98
16987550--16987744	90	2.2	90	88	0	282	27	22	26	23	2.00
16989112--16989292	81	2.2	80	85	0	236	22	18	29	29	1.98
16997428--16997482	21	2.5	21	76	8	56	43	18	5	32	1.73
17002112--17002161	22	2.3	22	96	0	91	46	4	26	24	1.70
17011079--17011258	81	2.2	81	82	0	216	25	16	28	30	1.96
17011279--17011350	26	2.8	26	87	2	101	30	18	25	26	1.98
17017206--17017330	47	2.7	46	73	8	117	36	20	16	27	1.94
17022261--17022403	49	2.9	49	84	1	187	38	25	11	24	1.89
17028652--17028684	15	2.2	15	94	0	57	48	24	0	27	1.51
17035569--17035606	19	1.9	19	85	15	51	34	5	36	23	1.78
17038916--17038940	12	2.1	12	100	0	50	36	8	16	40	1.77
17039230--17039316	17	5.1	17	81	5	95	37	2	3	56	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17039230--17039314	35	2.5	34	83	7	100	37	2	3	56	1.29
17040320--17040344	12	2.1	12	100	0	50	36	8	16	40	1.77
17044162--17044214	20	2.8	18	75	13	54	41	3	1	52	1.30
17044360--17044410	25	2.0	25	85	7	68	43	7	11	37	1.71
17048696--17048749	20	2.7	20	85	0	63	31	29	9	29	1.88
17048935--17048990	20	2.8	20	86	0	67	32	28	8	30	1.88
17051712--17051744	15	2.2	15	94	0	57	48	24	0	27	1.51
17058630--17058667	19	1.9	19	85	15	51	34	5	36	23	1.78
17061982--17062006	12	2.1	12	100	0	50	36	8	16	40	1.77
17062296--17062382	17	5.1	17	81	5	95	37	2	3	56	1.29
17062296--17062380	35	2.5	34	83	7	100	37	2	3	56	1.29
17064191--17064470	30	9.5	28	76	13	187	36	28	3	31	1.75
17064192--17064470	60	4.7	58	78	11	207	36	28	3	31	1.76
17064477--17064542	30	2.2	30	84	7	89	36	19	6	37	1.77
17064336--17064520	89	2.1	90	81	9	220	37	26	3	31	1.74
17064666--17064711	23	2.0	23	84	12	60	26	2	4	67	1.21
17071957--17072060	39	2.7	39	100	0	208	38	25	1	33	1.67
17076649--17077220	78	7.3	78	77	5	401	23	30	19	26	1.98
17076533--17077224	117	5.9	114	72	12	392	22	30	20	26	1.99
17076579--17077207	156	4.0	157	79	6	529	23	30	20	26	1.98
17076594--17077204	39	15.7	39	72	12	244	23	30	19	26	1.98
17077662--17077720	17	3.5	17	83	4	75	37	1	5	55	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17077644--17077745	41	2.5	41	78	10	120	41	0	3	53	1.26
17077687--17077745	23	2.5	23	91	2	91	38	1	5	54	1.33
17077655--17077720	35	1.9	34	87	9	98	39	1	4	54	1.30
17077657--17077743	17	4.7	17	72	23	61	39	1	4	55	1.28
17077687--17077750	24	2.7	24	90	4	94	39	1	4	54	1.31
17079550--17079663	29	3.9	29	82	3	95	33	26	5	35	1.79
17079581--17079736	29	5.5	29	75	14	130	35	25	5	32	1.80
17079743--17079808	30	2.2	31	86	5	91	34	19	6	39	1.77
17083249--17083278	15	2.0	15	93	0	51	43	26	16	13	1.85
17087575--17087622	19	2.5	20	75	21	50	45	0	0	54	0.99
17087791--17087983	97	2.0	93	89	4	287	37	4	5	51	1.46
17087687--17088096	210	2.0	204	84	8	546	36	3	5	54	1.41
17087998--17088023	6	4.3	6	100	0	52	15	0	0	84	0.62
17088551--17088596	18	2.7	16	81	15	56	32	0	2	65	1.05
17090766--17090805	21	2.0	21	90	5	64	77	0	20	2	0.88
17090777--17090807	14	2.1	15	94	5	55	77	0	22	0	0.77
17092287--17092311	12	2.1	12	100	0	50	36	8	16	40	1.77
17096130--17096182	20	2.8	18	75	13	54	41	3	1	52	1.30
17096328--17096378	25	2.0	25	85	7	68	43	7	11	37	1.71
17100663--17100716	20	2.7	20	85	0	63	31	29	9	29	1.88
17100902--17100957	20	2.8	20	86	0	67	32	28	8	30	1.88
17103899--17103938	20	2.0	20	85	5	53	60	7	5	27	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17105382--17105415	14	2.5	14	90	4	52	41	23	5	29	1.78
17106966--17107117	30	5.1	28	77	15	153	35	27	2	34	1.71
17106966--17107148	60	3.1	57	81	11	206	34	28	3	33	1.74
17106980--17107147	90	1.9	90	82	9	218	35	26	3	34	1.74
17106988--17107148	30	5.4	30	76	11	141	33	27	3	34	1.75
17112578--17112613	15	2.6	14	91	8	56	80	0	19	0	0.71
17113545--17113675	49	2.7	49	77	8	131	32	12	35	19	1.89
17113900--17114058	86	1.9	85	85	1	219	32	13	26	27	1.94
17114148--17114497	161	2.2	160	89	2	524	38	16	21	23	1.93
17114518--17114620	37	2.8	36	86	5	152	35	13	26	24	1.92
17114308--17114828	245	2.1	245	87	2	744	37	15	23	23	1.93
17113776--17115214	209	7.0	208	77	10	1168	37	15	22	24	1.93
17116577--17116611	12	2.9	12	95	0	61	51	5	42	0	1.25
17117177--17117507	30	11.1	30	82	9	311	35	27	3	34	1.72
17117172--17117506	119	2.8	119	81	6	367	35	26	3	34	1.73
17120121--17120183	18	3.4	20	81	12	73	69	6	1	22	1.19
17120167--17120264	27	3.6	27	68	22	71	57	2	6	34	1.35
17120221--17120376	64	2.5	64	76	13	144	59	1	1	37	1.17
17120221--17120413	46	4.2	46	75	9	155	59	2	2	36	1.21
17120340--17120414	10	7.7	10	79	13	68	62	2	1	33	1.17
17120221--17120414	19	10.5	19	70	16	95	59	2	2	36	1.21
17120221--17120414	9	21.0	9	71	15	121	59	2	2	36	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17120942--17121015	38	1.9	39	81	8	89	33	1	5	59	1.29
17120989--17121038	20	2.4	22	86	6	68	38	0	2	60	1.09
17120982--17121052	29	2.5	28	80	11	74	33	0	1	64	1.02
17120938--17121052	9	12.2	9	68	18	56	33	0	3	62	1.18
17122047--17122071	13	1.9	13	100	0	50	24	4	0	72	1.02
17125819--17125848	5	5.8	5	92	7	51	80	0	20	0	0.72
17125811--17125864	11	4.8	11	77	11	56	79	0	20	0	0.73
17125811--17125864	17	3.2	17	84	12	67	79	0	20	0	0.73
17125809--17125864	18	2.9	20	77	17	64	80	0	19	0	0.71
17125736--17125899	88	1.9	88	86	7	235	64	7	19	7	1.45

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143