genome.fa.s11.2.7.7.80.10.50.1000.97.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032255.1 Gossypioides kirkii chromosome KI_13
Parameters: 2 7 7 80 10 50 1000
Length:  42971368

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   

This is table  97  of  143  ( 17057 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30149310--30149348	19	2.1	19	85	0	51	30	12	10	46	1.75
30152091--30152128	20	1.9	20	84	10	51	31	15	0	52	1.43
30152407--30152550	51	2.9	50	73	8	139	34	19	20	25	1.96
30152873--30152913	14	3.1	14	79	6	50	73	2	0	24	0.96
30154086--30154115	14	2.1	14	93	0	51	16	0	6	76	0.99
30154089--30154142	19	2.8	20	83	8	67	16	3	5	74	1.16
30154169--30154217	20	2.4	21	80	13	57	26	6	2	65	1.27
30157380--30157430	25	2.0	25	85	7	68	19	0	7	72	1.08
30157488--30157555	20	3.3	21	74	15	63	19	1	5	73	1.11
30157520--30157575	15	3.6	15	76	11	51	19	1	5	73	1.12
30157824--30157936	4	27.2	4	68	25	58	23	3	3	69	1.19
30157823--30157864	21	2.0	22	90	4	68	21	0	4	73	1.01
30157825--30157890	26	2.5	25	77	20	71	22	0	4	72	1.02
30157835--30157889	28	2.0	28	86	13	78	21	0	5	72	1.04
30163210--30163253	8	5.6	8	87	12	65	79	9	0	11	0.93
30163210--30163253	17	2.8	17	90	10	67	79	9	0	11	0.93
30166911--30166959	25	2.0	25	95	0	89	38	12	28	20	1.89
30168323--30168672	50	7.0	50	78	4	296	37	16	22	23	1.94
30168323--30168639	100	3.2	97	83	5	377	36	15	24	23	1.94
30168323--30168682	99	3.6	99	81	6	372	37	16	23	23	1.93
30168641--30168719	37	2.1	37	83	0	95	41	21	18	17	1.90
30168545--30168816	136	2.0	136	81	5	318	37	18	21	22	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30168446--30168902	235	1.9	236	85	2	632	38	17	21	22	1.93
30168736--30168926	50	3.8	49	75	4	168	39	16	20	23	1.92
30170031--30170079	21	2.3	22	85	3	64	20	2	4	73	1.10
30170330--30170393	17	3.6	17	75	10	56	25	3	4	67	1.25
30172317--30172412	42	2.3	42	96	0	183	26	12	9	52	1.69
30173958--30174034	19	3.9	20	77	11	70	35	1	3	59	1.24
30173985--30174031	10	4.7	10	86	7	60	29	0	2	68	1.02
30174731--30174779	23	2.0	25	84	7	66	38	0	2	59	1.09
30187465--30187760	148	2.0	148	95	0	538	26	22	17	32	1.97
30189505--30189546	20	2.1	19	86	8	57	52	14	7	26	1.67
30192470--30192526	29	2.0	29	96	0	105	49	10	5	35	1.60
30201067--30201462	141	2.8	139	83	4	485	29	17	20	32	1.95
30201780--30201841	21	2.9	20	75	13	61	48	35	0	16	1.46
30202457--30202957	71	7.0	72	76	9	429	27	22	13	35	1.92
30202457--30202989	36	14.9	37	80	7	502	27	22	13	36	1.92
30202457--30202988	107	5.0	107	80	6	510	27	22	13	36	1.92
30204119--30204152	14	2.3	15	90	5	52	70	0	8	20	1.13
30204311--30204479	78	2.2	79	95	1	304	53	7	5	33	1.52
30204311--30204494	79	2.3	78	92	1	269	52	8	5	33	1.55
30204657--30204694	13	2.9	13	96	0	67	2	31	5	60	1.33
30204655--30204695	19	2.2	19	86	8	57	2	29	4	63	1.28
30204655--30204695	6	6.5	6	83	10	55	2	29	4	63	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30204739--30204780	19	2.3	18	84	12	50	42	11	7	38	1.69
30206429--30206517	17	5.2	17	87	2	133	40	2	2	55	1.25
30206437--30206517	6	14.0	6	71	12	62	39	2	2	55	1.26
30206512--30206550	21	1.9	20	84	5	51	35	20	5	38	1.75
30207160--30207197	20	1.9	20	88	0	58	44	0	0	55	0.99
30208344--30208481	30	4.7	29	81	8	154	29	26	5	38	1.78
30208344--30208481	59	2.3	58	81	9	163	29	26	5	38	1.78
30208446--30208936	29	16.8	29	78	8	386	33	26	4	36	1.75
30208367--30208546	59	3.0	60	80	6	172	33	26	5	35	1.78
30208476--30208984	264	1.9	264	93	0	867	34	25	4	36	1.75
30208380--30208955	29	19.6	29	78	8	364	33	26	3	35	1.75
30208889--30208984	29	3.3	30	84	5	99	36	22	4	36	1.74
30208933--30209007	29	2.5	30	83	12	93	34	17	4	44	1.67
30211718--30211746	13	2.1	14	93	6	51	37	0	13	48	1.43
30213635--30213679	24	2.0	22	86	8	63	48	0	0	51	1.00
30213927--30213958	7	4.6	7	100	0	64	43	0	0	56	0.99
30213928--30214047	17	7.2	17	79	8	99	39	1	3	55	1.26
30213942--30214047	34	3.1	33	85	5	131	38	1	3	55	1.29
30213930--30214027	6	16.7	6	72	11	53	38	2	3	56	1.27
30214762--30214815	12	4.3	12	83	6	63	53	0	1	44	1.11
30214831--30215059	29	7.8	30	77	11	188	34	19	4	41	1.72
30214831--30215052	58	3.8	58	78	9	218	34	18	4	42	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30214858--30215059	88	2.3	87	80	10	209	35	20	4	39	1.73
30215065--30215359	145	2.0	145	84	5	382	29	25	9	35	1.87
30215204--30215290	30	3.0	30	73	15	74	25	31	12	31	1.93
30222276--30222364	44	2.0	46	84	8	121	31	5	24	38	1.79
30222459--30222610	58	2.6	60	86	9	215	51	0	1	46	1.17
30222459--30222607	28	5.2	27	67	20	88	51	0	2	46	1.17
30227504--30227537	7	4.9	7	100	0	68	44	14	26	14	1.84
30238609--30238649	18	2.3	18	91	0	64	73	2	17	7	1.17
30244433--30244484	9	5.4	9	76	13	50	82	1	5	9	0.90
30244433--30244481	19	2.5	19	80	3	53	81	2	6	10	0.94
30245879--30245936	25	2.3	25	84	0	71	27	22	24	25	2.00
30251638--30251714	25	3.1	25	86	0	91	32	18	22	27	1.97
30258719--30258757	17	2.3	17	86	0	51	53	12	15	17	1.72
30259180--30259224	24	1.9	23	82	13	56	0	28	2	68	1.01
30261087--30261125	21	1.9	20	84	5	51	20	20	17	41	1.91
30265254--30265298	18	2.5	19	82	10	58	15	13	31	40	1.86
30265269--30265305	18	2.1	18	94	0	65	21	10	27	40	1.86
30274956--30275016	17	3.5	17	68	16	52	55	4	3	36	1.38
30275162--30275494	175	1.9	175	80	10	394	42	0	31	25	1.61
30276149--30276197	19	2.6	19	84	12	66	71	0	0	28	0.86
30281101--30281133	16	2.2	15	89	10	50	48	18	3	30	1.63
30281875--30282113	28	8.1	28	76	17	170	36	23	1	39	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30281876--30282177	30	10.2	29	78	13	278	36	23	1	39	1.63
30286843--30287002	55	2.8	56	82	8	166	30	20	10	38	1.87
30286922--30287160	110	2.2	112	78	11	251	32	18	12	36	1.88
30286989--30287364	54	6.8	54	72	13	201	32	18	13	36	1.89
30286977--30287159	56	3.3	55	79	11	187	32	18	13	35	1.89
30286977--30287364	110	3.5	108	74	14	349	32	18	12	36	1.89
30289604--30289655	27	1.9	27	88	7	79	36	0	3	59	1.16
30289808--30289870	17	3.8	16	83	10	72	46	7	1	44	1.42
30297152--30297346	97	2.0	98	80	6	218	40	12	16	30	1.86
30297579--30297746	61	2.8	60	84	7	207	35	5	27	32	1.79
30297628--30298101	118	4.0	119	79	7	418	37	4	27	31	1.75
30297759--30298113	59	6.0	59	84	7	402	38	3	27	30	1.75
30297571--30298098	29	17.9	29	69	15	191	36	4	27	31	1.77
30300307--30300974	201	3.3	206	85	2	934	22	23	18	35	1.96
30300984--30301169	78	2.4	78	87	0	264	26	19	27	25	1.99
30301432--30301701	49	5.5	49	84	3	337	13	27	21	38	1.90
30301419--30301808	99	4.0	97	80	6	308	14	24	21	38	1.91
30301419--30301802	49	7.8	48	76	9	217	14	25	21	38	1.91
30301410--30301795	148	2.6	146	78	3	407	14	25	21	39	1.91
30303019--30303124	1	106.0	1	70	0	68	1	7	5	84	0.82
30303037--30303114	9	8.7	9	78	16	81	1	5	7	85	0.77
30303018--30303124	17	6.3	17	77	13	89	1	8	5	84	0.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30303861--30303901	11	3.7	12	81	15	52	12	2	7	78	1.06
30308128--30308304	97	1.8	98	81	6	225	40	12	16	29	1.86
30308128--30308325	97	2.0	98	79	7	215	40	13	16	30	1.86
30308556--30308714	59	2.7	57	80	9	158	36	6	25	32	1.81
30308556--30308775	58	3.7	58	80	6	183	37	5	25	31	1.80
30308639--30308978	29	11.6	28	70	14	188	40	4	25	30	1.75
30308607--30308970	59	6.2	58	80	7	301	40	4	25	29	1.76
30310697--30310752	11	4.9	11	79	14	60	57	3	1	37	1.27
30310677--30310787	17	6.4	17	79	7	116	52	4	1	41	1.32
30310677--30310755	6	13.7	6	71	17	60	51	2	1	44	1.23

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143