genome.fa.s11.2.7.7.80.10.50.1000.92.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032255.1 Gossypioides kirkii chromosome KI_13
Parameters: 2 7 7 80 10 50 1000
Length:  42971368

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   

This is table  92  of  143  ( 17057 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28618366--28618498	70	1.9	67	89	4	203	42	11	12	33	1.78
28623139--28623181	11	3.8	11	80	17	52	30	2	2	65	1.18
28623142--28623185	23	1.9	23	90	0	70	31	2	4	61	1.28
28624882--28624924	19	2.3	19	95	0	77	30	16	20	32	1.95
28627989--28628022	17	1.9	17	88	5	50	61	2	0	35	1.11
28628004--28628046	22	2.0	22	86	9	61	65	2	0	32	1.06
28630048--28630087	12	3.1	14	82	10	50	62	0	0	37	0.95
28630822--28630862	14	2.7	16	77	11	50	34	9	9	46	1.70
28638673--28638729	21	2.7	21	81	5	62	28	22	14	35	1.93
28639437--28639478	18	2.3	18	87	0	66	35	26	19	19	1.95
28648543--28648733	30	6.4	29	84	3	204	38	1	23	37	1.62
28648543--28648743	59	3.4	59	80	6	199	37	1	23	37	1.64
28649435--28649465	12	2.7	12	95	5	55	12	6	0	80	0.89
28649840--28649972	3	42.3	3	74	11	88	32	3	6	58	1.37
28650610--28650673	6	11.0	6	70	12	53	53	4	0	42	1.22
28650611--28650666	11	4.9	11	73	16	51	55	5	0	39	1.23
28650613--28650662	18	2.9	17	90	3	73	58	6	0	36	1.23
28650597--28650684	17	5.1	17	80	2	86	54	5	0	39	1.24
28650947--28651766	92	8.9	92	95	0	1428	26	17	20	35	1.95
28663737--28663801	28	2.3	28	86	5	87	27	12	26	33	1.92
28663748--28663827	28	2.9	28	92	0	124	28	7	30	33	1.85
28663870--28664122	90	2.8	91	82	5	232	38	2	21	37	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28663901--28664122	30	7.4	30	89	2	281	38	1	21	39	1.62
28665261--28665332	36	2.0	37	83	2	92	29	4	11	55	1.53
28665970--28666021	11	4.6	11	80	17	54	55	1	0	42	1.10
28665979--28666028	6	8.7	6	78	8	59	54	2	0	44	1.11
28665970--28666039	34	2.1	34	88	0	104	55	4	0	40	1.19
28665970--28666035	17	3.9	17	85	0	87	54	3	0	42	1.15
28665985--28666041	28	2.0	28	83	6	71	56	5	0	38	1.22
28673828--28673917	39	2.3	39	88	0	126	35	13	13	37	1.84
28673859--28674079	38	5.8	38	86	1	282	31	19	18	31	1.95
28673859--28674080	114	1.9	114	86	4	313	31	18	18	31	1.95
28675111--28675151	18	2.3	18	86	0	55	51	7	4	36	1.51
28686360--28686478	25	4.8	25	72	12	109	26	16	22	33	1.96
28686362--28686478	50	2.3	50	89	0	171	26	17	22	34	1.95
28686360--28686490	50	2.6	50	82	7	167	26	16	22	33	1.96
28688780--28688813	14	2.4	14	85	0	50	41	0	32	26	1.56
28692574--28692626	26	2.0	26	100	0	106	20	15	26	37	1.92
28693726--28693790	25	2.7	23	77	15	60	29	24	21	24	1.99
28693751--28693825	24	3.1	24	84	0	96	29	22	21	26	1.99
28694452--28694520	33	2.1	33	97	0	129	28	36	5	28	1.80
28696183--28696238	21	2.7	21	81	13	71	28	10	30	30	1.91
28696326--28696686	184	2.0	184	88	1	544	34	11	19	34	1.88
28701230--28701281	27	1.9	27	84	0	68	28	28	23	19	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28701437--28701465	14	2.0	15	93	6	51	41	6	0	51	1.28
28705527--28705585	26	2.3	26	84	0	73	37	0	5	57	1.21
28705754--28705801	15	3.2	14	80	13	51	22	0	25	52	1.48
28705753--28705849	21	4.5	21	73	10	88	19	1	30	48	1.56
28705748--28705835	7	12.3	7	75	9	63	23	0	27	48	1.51
28705748--28705849	14	7.1	14	72	12	64	21	0	29	48	1.57
28705921--28705982	27	2.3	27	88	0	88	37	17	27	17	1.93
28706177--28706220	18	2.4	18	88	0	61	13	22	29	34	1.93
28706186--28706226	18	2.3	18	91	0	64	14	24	31	29	1.95
28724543--28724595	26	2.0	26	82	10	63	47	0	1	50	1.12
28726113--28726162	12	4.2	12	72	27	52	72	0	28	0	0.86
28726105--28726162	30	1.9	30	82	6	73	68	1	27	1	1.08
28732398--28732447	20	2.4	20	86	6	73	48	6	4	42	1.46
28733156--28733191	3	12.0	3	93	0	63	63	0	2	33	1.08
28734638--28734708	34	2.1	34	82	10	83	52	19	0	28	1.47
28734844--28734902	27	2.2	26	84	6	73	61	6	1	30	1.32
28734844--28734923	28	2.9	27	78	12	74	62	6	1	30	1.27
28735644--28735686	18	2.4	18	80	7	52	46	2	0	51	1.13
28736838--28736892	15	3.6	15	82	4	74	41	12	12	32	1.81
28736843--28736901	31	1.9	31	85	0	82	42	13	13	30	1.83
28737441--28737472	17	1.9	17	93	6	57	37	21	12	28	1.90
28737641--28737759	20	5.9	20	69	20	72	19	16	9	54	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28737639--28737757	40	3.0	40	81	3	123	19	15	9	55	1.67
28741566--28741620	27	2.1	26	83	10	67	34	9	0	56	1.31
28746973--28747028	16	3.5	16	87	4	78	39	0	26	33	1.57
28747010--28747103	44	2.1	46	86	7	131	30	3	27	38	1.73
28747202--28747358	58	2.7	59	88	6	221	52	1	0	44	1.16
28750805--28750846	19	2.2	19	83	8	50	54	0	2	42	1.13
28750873--28750915	19	2.2	20	87	4	61	60	0	0	39	0.97
28756936--28756999	20	3.3	18	74	21	67	15	6	20	57	1.59
28756925--28757000	40	1.9	40	100	0	152	17	6	21	55	1.64
28756928--28756993	19	3.2	22	72	24	79	18	7	18	56	1.64
28764240--28764288	22	2.2	22	88	0	71	67	10	4	18	1.36
28768627--28768652	12	2.2	12	100	0	52	38	7	23	30	1.83
28772428--28772495	17	3.9	17	81	9	84	35	1	7	55	1.37
28772447--28772548	6	17.2	6	68	17	52	45	1	3	49	1.32
28773367--28773411	23	2.0	23	86	0	63	20	26	26	26	1.99
28773933--28773959	10	2.7	10	100	0	54	18	51	22	7	1.70
28774344--28774598	30	8.6	29	77	8	174	35	26	3	35	1.72
28774352--28774577	59	3.8	58	79	8	215	34	26	3	35	1.74
28781516--28782200	340	2.0	341	98	0	1318	38	14	13	34	1.84
28783392--28783614	29	7.7	29	78	8	186	37	24	3	34	1.72
28783392--28783610	58	3.7	58	78	7	237	37	23	3	35	1.71
28783419--28783641	88	2.5	90	82	7	255	35	24	4	34	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28783475--28783639	29	5.6	29	78	12	99	33	25	3	36	1.74
28793266--28793372	30	3.6	31	76	17	102	37	5	26	30	1.79
28793266--28793386	58	2.1	59	82	4	147	37	5	27	29	1.80
28793266--28793400	29	4.6	28	76	15	96	37	5	25	31	1.80
28795552--28795599	17	2.8	17	80	0	60	50	14	16	18	1.79
28796039--28796088	24	2.2	23	86	13	68	0	32	4	64	1.12
28799943--28799981	18	2.2	18	85	0	51	33	30	2	33	1.72
28802463--28802509	22	2.1	22	100	0	94	21	4	25	48	1.68
28826396--28826488	38	2.5	38	79	10	111	31	30	13	24	1.94
28836934--28836968	18	1.9	18	88	0	52	45	17	8	28	1.77
28843065--28843124	18	3.3	18	77	13	52	53	1	40	5	1.33
28843538--28843581	18	2.5	18	81	3	54	13	11	13	61	1.57
28847953--28848210	23	11.3	23	84	0	302	34	7	12	45	1.70
28847956--28848210	114	2.2	115	85	1	341	34	7	12	45	1.70
28847954--28848210	137	1.9	137	88	0	388	34	7	12	45	1.70
28861338--28861376	20	1.9	21	94	5	71	12	12	5	69	1.35
28864867--28864928	30	2.1	30	90	0	97	40	22	14	22	1.90
28865875--28865904	14	2.2	14	94	5	53	30	20	10	40	1.85
28872189--28872221	17	1.9	17	93	0	57	15	12	15	57	1.65
28883506--28883557	10	4.9	11	80	17	65	78	0	15	5	0.92
28883502--28883557	21	2.7	21	94	0	103	80	0	14	5	0.88
28892855--28892900	24	2.0	24	86	4	67	54	8	10	26	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28897953--28897981	14	2.1	14	93	6	51	72	0	0	27	0.85
28903311--28903369	24	2.5	24	82	0	64	22	30	28	18	1.97
28903414--28903515	27	3.8	27	81	0	96	25	15	33	25	1.95
28903872--28903957	28	3.1	28	86	6	106	30	1	13	54	1.47
28903906--28903959	26	2.1	26	96	0	99	31	0	9	59	1.29
28904665--28904716	14	3.7	14	76	0	50	50	30	0	19	1.48
28904661--28904717	28	2.0	28	86	0	78	47	29	0	22	1.52
28904713--28904845	26	5.0	26	84	1	158	55	11	0	32	1.41
28907618--28907664	20	2.3	20	88	0	67	34	19	2	44	1.62
28907723--28907784	27	2.3	27	80	5	72	19	41	20	17	1.90

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143