genome.fa.s11.2.7.7.80.10.50.1000.103.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032255.1 Gossypioides kirkii chromosome KI_13
Parameters: 2 7 7 80 10 50 1000
Length:  42971368

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   

This is table  103  of  143  ( 17057 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31620710--31620776	17	4.0	17	83	15	77	80	0	14	4	0.86
31620715--31620779	24	2.7	23	88	9	94	83	0	13	3	0.77
31620719--31620800	25	3.2	25	80	13	78	80	0	14	4	0.87
31620717--31620799	13	6.5	13	68	23	52	79	0	15	4	0.89
31621750--31621884	50	2.7	50	84	0	171	37	15	30	17	1.91
31621750--31621905	50	3.1	50	83	1	143	37	16	28	17	1.91
31621870--31622274	197	2.1	197	81	2	465	35	18	26	19	1.95
31622541--31622781	39	6.2	39	68	14	120	26	30	19	23	1.98
31622541--31622760	78	2.8	78	85	1	253	26	32	17	23	1.97
31622795--31623380	209	2.8	209	89	3	835	37	17	22	22	1.94
31623301--31623438	48	2.9	48	88	5	181	39	13	22	23	1.90
31623645--31623715	37	1.9	37	88	0	106	33	12	25	28	1.92
31624160--31624236	6	13.7	6	71	22	60	40	0	3	55	1.18
31624160--31624222	17	3.7	17	86	0	90	39	0	4	55	1.21
31624865--31624908	22	2.1	22	87	8	65	59	2	4	34	1.30
31626040--31626114	29	2.5	30	82	8	100	38	20	6	34	1.78
31626166--31626236	30	2.5	27	82	8	79	43	22	1	32	1.62
31626137--31626391	58	4.4	56	73	9	174	38	26	2	32	1.71
31626137--31626391	29	8.8	29	74	8	153	38	26	2	32	1.71
31626176--31626391	87	2.5	85	81	7	236	35	28	3	32	1.73
31627046--31627239	97	2.0	97	85	7	261	38	14	17	29	1.90
31627494--31627961	29	15.9	29	71	14	214	37	3	25	33	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31627863--31627976	30	3.9	30	85	5	144	36	1	24	36	1.66
31627488--31627956	58	8.0	59	76	12	267	36	3	26	33	1.74
31627437--31627969	29	18.2	29	69	16	180	36	4	25	33	1.75
31629708--31629802	17	5.5	17	74	1	82	52	7	4	35	1.49
31629713--31629802	34	2.6	34	78	0	99	54	6	4	34	1.47
31634895--31634948	20	2.8	20	85	2	74	31	11	24	33	1.90
31640778--31640851	4	18.2	4	80	8	78	64	0	32	2	1.07
31640778--31640851	37	2.0	36	89	2	112	64	0	32	2	1.07
31641063--31641126	28	2.2	30	81	10	71	35	6	3	54	1.41
31642414--31642611	29	6.9	29	73	14	160	39	3	24	32	1.73
31642376--31642611	58	4.1	57	83	4	269	39	3	25	31	1.73
31642619--31642752	57	2.3	58	83	8	159	38	2	25	33	1.68
31642619--31642720	29	3.6	27	75	13	89	39	0	26	33	1.63
31642489--31642729	129	1.9	131	87	5	364	41	3	24	31	1.71
31643529--31643569	22	2.0	21	85	9	57	24	4	7	63	1.40
31644455--31644515	6	10.7	6	75	10	65	55	1	1	40	1.19
31644798--31644952	40	3.6	40	70	23	125	36	15	14	33	1.88
31644784--31645009	92	2.5	92	96	0	407	33	16	15	34	1.90
31656864--31657021	29	5.5	28	73	19	105	37	2	28	31	1.70
31656859--31657089	58	4.0	56	87	6	268	38	3	26	30	1.73
31656894--31657050	29	5.5	29	73	19	132	38	0	28	31	1.62
31656918--31657079	29	5.6	27	72	18	105	39	1	26	32	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31656859--31657089	115	2.0	115	82	7	281	38	3	26	30	1.73
31657063--31657119	30	1.9	30	88	0	87	42	7	17	33	1.76
31663704--31663792	27	3.3	27	72	17	78	33	6	17	41	1.76
31665656--31665693	18	2.1	18	90	0	58	60	0	2	36	1.11
31669955--31669990	18	1.9	18	88	5	54	44	0	8	47	1.33
31672256--31672467	106	2.0	106	100	0	424	34	11	17	35	1.86
31675437--31675601	51	3.3	50	68	14	124	29	18	14	37	1.90
31675444--31675628	99	1.9	99	93	0	316	31	16	14	37	1.89
31675706--31675856	67	2.3	66	86	5	205	37	13	9	39	1.79
31678221--31678268	25	1.9	25	83	8	62	4	39	0	56	1.19
31682653--31682687	6	5.8	6	100	0	70	34	17	48	0	1.47
31689018--31689063	17	2.9	16	84	12	60	52	0	0	47	1.00
31693210--31693265	22	2.5	21	75	13	51	33	1	3	60	1.24
31697703--31697976	145	1.9	145	83	3	354	38	7	24	29	1.82
31698031--31698195	28	5.8	28	76	3	114	38	3	24	33	1.71
31698030--31698319	29	9.9	29	73	8	196	37	3	23	35	1.71
31698059--31698319	59	4.4	58	81	9	257	37	2	22	37	1.69
31699495--31699551	13	4.5	13	82	2	62	36	1	0	61	1.07
31700291--31700371	17	4.8	17	81	13	71	53	1	1	44	1.16
31700310--31700371	6	10.8	6	79	10	76	53	0	1	45	1.10
31700317--31700373	28	2.0	28	86	6	80	54	0	1	43	1.10
31700305--31700360	23	2.4	23	87	0	85	53	0	0	46	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31700309--31700353	11	4.0	11	91	5	72	55	0	0	44	0.99
31708516--31708604	39	2.3	39	79	14	103	46	0	4	49	1.22
31715275--31715468	85	2.3	85	80	2	203	28	27	16	26	1.97
31715275--31715468	43	4.6	43	78	2	214	28	27	16	26	1.97
31726923--31726968	24	1.9	23	86	8	65	56	6	4	32	1.45
31739679--31740003	167	2.0	158	93	5	551	30	16	12	41	1.85
31741670--31741715	24	1.9	23	86	8	65	56	6	4	32	1.45
31742753--31742792	11	3.7	11	86	6	55	12	12	0	75	1.06
31759400--31759593	43	4.6	43	78	2	187	29	27	15	27	1.96
31759400--31759593	85	2.3	85	79	2	203	29	27	15	27	1.96
31762530--31762558	15	1.9	15	100	0	58	48	34	3	13	1.60
31762759--31762811	21	2.5	21	90	0	79	1	47	18	32	1.60
31762801--31762954	66	2.3	66	88	0	227	15	24	16	43	1.86
31768387--31768453	33	2.1	33	94	2	118	41	10	4	43	1.59
31768475--31768917	30	15.6	29	62	21	120	49	4	2	43	1.35
31768579--31768917	18	18.5	18	64	18	85	49	5	2	43	1.38
31768796--31768963	46	3.2	46	66	30	122	47	6	2	43	1.42
31768854--31768917	9	7.2	8	76	16	56	54	3	0	42	1.16
31768597--31768972	112	3.3	112	95	1	671	47	5	2	43	1.42
31770272--31770307	9	4.1	9	92	7	65	44	0	0	55	0.99
31770271--31770308	17	2.2	17	100	0	76	42	0	0	57	0.98
31770371--31770397	10	2.7	10	100	0	54	40	0	11	48	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31772080--31772402	41	7.9	41	86	0	441	16	30	21	31	1.95
31772080--31772402	82	3.9	82	90	0	486	16	30	21	31	1.95
31787352--31787397	24	1.9	23	86	8	65	56	6	4	32	1.45
31788433--31788475	11	3.8	12	87	9	63	11	11	0	76	1.02
31789414--31789451	17	2.2	17	90	9	60	76	2	0	21	0.91
31789414--31789455	12	3.7	12	84	9	52	73	2	0	23	0.94
31793226--31793271	24	1.9	23	86	8	65	56	6	4	32	1.45
31802699--31803025	166	2.0	161	95	3	591	30	16	12	40	1.85
31804693--31804738	24	1.9	23	86	8	65	56	6	4	32	1.45
31805777--31805816	11	3.7	11	86	6	55	12	12	0	75	1.06
31822419--31822612	43	4.6	43	78	2	187	29	27	15	27	1.96
31822419--31822612	85	2.3	85	79	2	203	29	27	15	27	1.96
31828855--31829048	43	4.6	43	76	5	180	29	28	15	26	1.96
31844014--31844091	22	3.7	21	76	17	81	70	15	6	7	1.31
31844014--31844102	20	4.3	21	81	5	101	69	16	5	7	1.32
31843941--31844106	32	5.2	32	72	10	106	65	19	7	7	1.42
31857311--31857340	3	10.3	3	92	7	53	0	0	30	70	0.88
31862103--31862131	14	2.1	14	100	0	58	37	20	0	41	1.53
31866700--31866750	14	3.4	15	78	10	59	62	0	5	31	1.19
31870160--31870324	60	2.8	59	81	3	188	23	13	12	50	1.75
31893619--31893654	2	18.0	2	100	0	72	50	0	0	50	1.00
31893732--31893845	40	2.8	40	88	5	167	24	17	27	30	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31893732--31893869	40	3.5	40	84	0	141	25	17	26	30	1.97
31893732--31893884	80	1.9	80	82	2	191	25	16	26	30	1.97
31895905--31896146	58	4.2	57	84	10	287	38	3	28	29	1.74
31895949--31896224	29	9.5	30	72	19	158	36	2	26	34	1.70
31896051--31896244	87	2.2	87	80	6	205	38	2	24	35	1.69
31897108--31897140	8	4.1	8	88	11	50	27	0	0	72	0.85
31901862--31901892	8	3.8	8	95	4	53	22	22	12	41	1.88
31910130--31910642	80	6.4	80	94	1	863	31	23	19	25	1.98
31911489--31911521	16	2.0	17	88	5	50	57	24	0	18	1.40
31913970--31914016	6	8.0	6	85	4	69	48	2	0	48	1.13

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143