genome.fa.s11.2.7.7.80.10.50.1000.127.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032255.1 Gossypioides kirkii chromosome KI_13
Parameters: 2 7 7 80 10 50 1000
Length:  42971368

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   

This is table  127  of  143  ( 17057 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37345783--37345879	41	2.4	41	82	1	106	41	3	2	53	1.28
37345795--37345894	17	5.4	17	72	19	67	41	3	3	53	1.32
37345814--37345889	11	6.7	11	72	11	55	39	2	2	55	1.28
37345830--37345913	17	4.9	17	78	10	75	44	1	3	51	1.26
37347690--37347946	59	4.4	59	90	1	365	33	29	2	34	1.72
37347690--37347947	117	2.2	117	88	1	365	32	29	3	34	1.73
37347693--37347941	29	8.5	30	71	22	149	33	28	2	35	1.72
37360114--37360573	76	6.0	76	94	0	794	35	14	17	33	1.90
37360855--37360959	6	18.0	6	70	13	67	45	2	1	49	1.27
37360831--37360923	24	3.7	24	74	19	73	40	3	2	53	1.29
37360843--37360930	41	2.1	41	82	0	104	42	3	2	52	1.31
37360855--37360899	17	2.6	18	85	3	65	42	4	0	53	1.21
37360890--37360956	35	1.9	35	84	6	91	44	1	2	50	1.26
37360855--37360938	41	2.0	42	88	2	125	41	3	2	52	1.31
37360874--37360958	17	4.9	17	76	9	73	45	2	2	49	1.27
37361681--37361717	3	12.3	3	88	0	56	62	0	2	35	1.10
37362247--37362280	15	2.2	16	89	5	52	20	55	17	5	1.62
37362668--37362768	30	3.5	28	73	23	93	34	28	0	35	1.64
37362666--37362820	29	5.3	29	67	20	97	34	28	1	34	1.69
37362665--37362916	59	4.3	59	89	1	355	33	27	3	35	1.73
37368957--37369372	49	8.4	49	72	7	299	18	26	18	35	1.95
37368956--37369372	98	4.2	98	85	2	541	18	26	18	35	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37370193--37370223	16	1.9	16	93	0	53	16	3	6	74	1.16
37371163--37371216	16	3.2	17	92	5	83	38	0	3	57	1.17
37372465--37372549	12	6.9	13	78	16	85	78	2	18	0	0.85
37372490--37372530	21	2.0	21	85	0	55	85	4	9	0	0.73
37373454--37373625	50	3.5	48	76	12	161	40	20	25	13	1.89
37373623--37373776	50	3.1	50	75	8	150	38	18	28	14	1.90
37373455--37373777	101	3.2	99	78	7	266	40	19	26	14	1.89
37373578--37373816	50	4.8	50	70	9	135	40	17	26	16	1.90
37373552--37373839	100	2.9	100	81	3	283	38	18	27	15	1.92
37374154--37375280	200	5.6	200	92	0	1806	37	21	22	19	1.94
37375625--37375649	13	1.9	13	100	0	50	40	0	8	52	1.31
37375634--37375676	17	2.5	17	88	3	59	37	0	4	58	1.19
37375634--37375687	16	3.2	17	89	5	74	38	0	5	55	1.23
37377172--37377241	33	2.1	32	82	10	79	15	12	14	57	1.66
37377529--37377627	29	3.4	27	75	15	83	36	26	3	34	1.72
37377587--37377767	59	3.1	58	75	8	170	33	26	3	37	1.73
37380333--37380384	15	3.2	16	75	22	54	67	0	1	30	1.02
37380281--37380389	40	2.7	40	81	9	105	61	2	0	34	1.17
37380306--37380358	27	2.0	27	81	7	63	62	0	0	37	0.96
37383151--37383183	16	2.1	16	88	11	50	36	0	9	54	1.32
37385828--37386068	59	4.1	60	79	7	183	34	5	22	36	1.77
37385966--37386105	30	4.8	28	80	10	131	37	1	21	39	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37385966--37386105	29	4.8	28	79	10	104	37	1	21	39	1.62
37385762--37386068	58	5.2	58	76	11	234	35	6	23	35	1.80
37387962--37388089	17	7.4	17	84	6	168	55	2	0	42	1.12
37387962--37388057	6	16.7	6	74	16	78	54	1	0	44	1.07
37387995--37388057	23	2.7	23	85	9	76	57	1	0	41	1.08
37387962--37388089	52	2.5	52	87	5	170	55	2	0	42	1.12
37387982--37388071	11	7.8	12	75	17	75	57	2	0	40	1.11
37388406--37389726	209	6.3	208	87	1	1711	22	22	18	36	1.95
37388422--37389726	622	2.1	624	86	2	1812	22	22	18	35	1.95
37389753--37389934	39	4.7	39	66	20	101	25	18	31	24	1.98
37389753--37389934	78	2.3	78	85	1	240	25	18	31	24	1.98
37389989--37390189	102	2.0	102	89	1	305	30	14	16	37	1.89
37390307--37390837	98	5.4	98	79	2	415	11	22	23	41	1.87
37390307--37390889	194	3.0	195	81	3	670	12	22	23	42	1.87
37390312--37390998	50	14.0	50	75	7	449	12	22	23	41	1.88
37390649--37390992	99	3.5	100	79	5	292	13	22	21	41	1.89
37392160--37392216	6	9.3	6	82	17	57	5	14	0	80	0.87
37392160--37392220	23	2.7	23	82	10	63	6	14	0	78	0.94
37393019--37393052	18	1.9	18	88	5	52	2	23	0	73	0.97
37400019--37400107	47	2.0	44	86	8	126	29	1	19	50	1.55
37400998--37401037	17	2.4	16	84	12	53	40	5	5	50	1.46
37404349--37405181	199	4.2	200	87	3	1174	36	21	23	19	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37405558--37405626	6	11.7	6	73	14	63	40	2	2	53	1.31
37405558--37405626	17	3.9	17	76	16	61	40	2	2	53	1.31
37405595--37405634	17	2.4	16	84	12	53	40	5	5	50	1.46
37406397--37406450	20	2.7	20	82	2	63	48	0	5	46	1.25
37406439--37406473	16	2.2	16	94	0	61	62	2	2	31	1.24
37412933--37412977	21	2.2	20	84	11	56	53	8	4	33	1.52
37413269--37413373	48	2.2	47	84	6	131	34	19	19	27	1.95
37423645--37423766	57	2.1	58	82	7	142	48	10	12	28	1.74
37423802--37423853	26	2.0	26	100	0	104	46	15	3	34	1.64
37424701--37424777	28	2.8	27	78	5	82	22	16	7	53	1.69
37424748--37424793	21	2.2	21	92	3	76	23	13	2	60	1.43
37425391--37425415	13	1.9	13	100	0	50	24	20	8	48	1.76
37425762--37425795	18	1.9	18	88	5	52	29	0	5	64	1.17
37426489--37426733	126	1.9	126	94	0	427	35	15	17	31	1.92
37432639--37432749	58	1.9	59	81	1	134	32	14	20	32	1.93
37435790--37435817	2	14.0	2	100	0	56	50	0	0	50	1.00
37443499--37443538	21	2.0	21	95	5	73	47	0	0	52	1.00
37443536--37443583	23	2.2	23	85	10	66	39	4	12	43	1.62
37443549--37443592	22	2.0	23	90	4	72	38	6	11	43	1.67
37444218--37444255	20	1.9	20	84	10	51	39	0	10	50	1.37
37444660--37444728	20	3.6	18	77	13	57	37	5	1	55	1.33
37449709--37449752	6	7.3	6	78	0	52	15	34	34	15	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37449709--37449752	12	3.7	12	87	0	61	15	34	34	15	1.90
37449919--37450033	33	3.7	30	70	19	78	3	27	5	63	1.32
37450002--37450040	11	3.5	11	82	10	53	0	33	0	66	0.92
37450002--37450040	17	2.4	16	91	4	60	0	33	0	66	0.92
37449906--37450050	22	6.3	22	67	25	70	3	28	4	64	1.28
37450078--37450142	30	2.3	29	84	7	80	49	4	35	10	1.58
37450072--37450121	21	2.4	21	79	0	55	48	6	34	12	1.65
37450240--37450328	6	15.0	6	81	6	56	1	28	1	69	1.02
37450225--37450360	57	2.3	59	75	15	138	4	30	1	63	1.22
37450334--37450442	48	2.3	49	85	7	152	10	38	0	50	1.42
37464752--37464809	19	2.9	18	78	14	62	51	5	1	41	1.34
37465005--37465064	11	5.7	11	74	18	56	68	0	5	26	1.10
37464995--37465055	29	2.1	28	87	6	86	67	1	4	26	1.20
37471903--37471941	8	4.9	8	90	9	62	0	61	0	38	0.96
37483786--37483853	27	2.5	26	83	6	73	61	14	1	22	1.41
37483786--37483853	28	2.5	27	85	4	84	61	14	1	22	1.41
37492633--37492675	22	2.0	22	86	4	61	69	0	0	30	0.88
37495974--37496037	21	3.1	20	67	8	56	50	3	29	17	1.61
37497869--37497911	22	1.9	23	90	4	70	37	0	6	55	1.27
37504773--37504822	18	2.8	18	74	17	50	64	0	0	36	0.94
37505125--37505179	22	2.6	21	82	5	74	50	9	18	21	1.74
37513373--37513411	17	2.4	17	87	12	55	61	0	0	38	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37519078--37519102	5	5.0	5	100	0	50	0	40	0	60	0.97
37527990--37528040	26	1.9	26	84	4	66	41	0	1	56	1.10
37532272--37532322	24	2.1	24	100	0	102	23	11	7	56	1.61
37532272--37532334	24	2.6	24	92	5	92	26	14	7	50	1.70
37532334--37532393	18	3.3	18	70	25	63	28	10	3	58	1.46
37532999--37533112	29	3.9	28	70	15	88	63	1	4	30	1.24
37533022--37533137	58	2.0	58	98	1	225	65	1	5	27	1.23
37533498--37533537	13	3.2	12	89	3	53	32	10	17	40	1.83
37535590--37535925	72	4.7	72	90	0	496	55	13	5	25	1.60
37536348--37536396	18	2.7	18	84	12	73	42	12	8	36	1.72

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143