genome.fa.s11.2.7.7.80.10.50.1000.119.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032255.1 Gossypioides kirkii chromosome KI_13
Parameters: 2 7 7 80 10 50 1000
Length:  42971368

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   

This is table  119  of  143  ( 17057 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35796213--35796240	14	2.0	14	100	0	56	57	0	7	35	1.26
35796578--35796794	40	4.7	50	71	21	177	34	16	13	35	1.88
35796534--35796891	92	3.9	92	92	1	551	32	16	15	35	1.90
35796813--35797578	76	10.1	76	92	0	1271	32	16	15	34	1.90
35809199--35809625	59	7.3	59	87	1	574	32	1	30	35	1.69
35809248--35809593	30	11.7	30	65	21	124	31	2	31	34	1.71
35810330--35810372	18	2.5	17	82	14	52	4	20	0	74	1.00
35811494--35811552	6	9.8	6	73	14	50	55	1	3	38	1.26
35811509--35811536	14	2.0	14	100	0	56	57	0	7	35	1.26
35813013--35813052	21	1.9	21	85	10	55	27	0	12	60	1.33
35813238--35813367	68	1.9	67	83	7	165	29	16	7	46	1.75
35813627--35813682	21	2.8	20	84	13	62	67	7	1	23	1.24
35814854--35814914	12	5.3	11	80	5	50	40	1	1	55	1.19
35814867--35814966	17	5.6	17	82	13	96	43	3	0	54	1.16
35814861--35814916	29	1.9	29	85	0	76	41	1	0	57	1.09
35814867--35814955	38	2.4	36	87	9	119	40	3	0	56	1.16
35814861--35814950	6	15.0	6	71	17	71	41	3	0	55	1.16
35815774--35815815	7	6.0	7	83	10	59	57	0	0	42	0.99
35815775--35815815	13	3.0	13	86	13	64	58	0	0	41	0.98
35816828--35817182	29	12.1	28	76	18	309	36	28	2	32	1.70
35816828--35817223	58	6.8	58	88	4	525	35	28	2	33	1.69
35825795--35826399	200	3.0	200	91	1	937	37	20	22	19	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35826774--35826863	6	15.0	6	71	17	71	41	3	0	55	1.16
35826780--35826863	17	4.6	18	84	12	109	40	3	0	55	1.17
35826774--35826829	29	1.9	29	85	0	76	41	1	0	57	1.09
35826780--35826863	38	2.3	35	88	10	116	40	3	0	55	1.17
35827650--35827698	15	2.9	17	88	11	66	44	2	6	46	1.39
35828711--35828984	29	9.5	28	77	12	259	35	28	1	34	1.67
35828708--35828989	59	4.9	58	89	4	419	35	29	1	33	1.66
35828971--35829041	29	2.5	28	84	9	81	33	25	5	35	1.79
35831557--35831738	71	2.6	71	86	4	244	29	18	6	45	1.73
35835096--35835149	2	27.0	2	100	0	108	0	50	0	50	1.00
35836063--35836102	21	1.9	21	85	10	55	30	2	10	57	1.45
35841621--35841654	17	2.0	17	88	0	50	64	5	5	23	1.38
35842219--35842276	23	2.5	23	80	0	80	25	20	22	31	1.98
35844218--35844254	18	2.1	17	90	5	56	75	5	16	2	1.10
35853286--35853488	30	6.8	30	83	6	229	34	1	24	39	1.65
35854192--35854234	22	1.9	23	90	4	70	2	4	9	83	0.87
35854385--35854463	38	2.1	38	88	4	115	18	29	37	13	1.90
35854509--35854546	13	2.9	13	92	0	58	42	0	2	55	1.14
35855761--35856574	68	11.9	68	90	1	1245	29	20	15	34	1.93
35855686--35856575	341	2.6	340	92	2	1433	29	20	15	34	1.94
35868248--35868531	60	4.8	61	83	9	356	36	3	21	38	1.72
35868248--35868531	30	9.5	29	81	6	270	36	3	21	38	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35868248--35868527	90	3.1	89	87	5	354	36	3	21	38	1.72
35869547--35869584	13	2.9	13	92	0	58	42	0	2	55	1.14
35869954--35870003	26	1.9	26	88	8	75	24	6	22	48	1.73
35870352--35870421	11	5.8	11	70	18	50	55	1	1	41	1.17
35875435--35875497	30	2.1	31	96	3	119	22	20	9	47	1.78
35876627--35876910	29	9.8	28	73	12	139	35	4	23	35	1.77
35876627--35876823	86	2.3	86	80	8	206	34	5	25	35	1.78
35876743--35877030	59	4.9	59	74	13	172	38	3	21	36	1.71
35876720--35877027	30	10.5	29	71	14	170	37	3	21	37	1.70
35878886--35878956	11	6.7	11	68	20	53	57	2	1	38	1.22
35878878--35878990	17	6.6	17	83	4	138	56	3	1	38	1.27
35878878--35878990	34	3.3	35	86	3	158	56	3	1	38	1.27
35879719--35879758	21	1.9	21	85	10	55	27	2	12	57	1.48
35880010--35880144	68	2.0	68	85	0	180	28	18	5	46	1.72
35880384--35880453	11	6.7	10	74	19	54	65	4	0	30	1.11
35880396--35880456	31	1.9	32	90	3	97	67	6	0	26	1.15
35880416--35880458	20	2.2	19	88	12	61	67	9	0	23	1.19
35883497--35883606	17	7.0	17	75	21	80	41	0	0	56	1.12
35883503--35883556	28	1.9	28	92	0	90	38	0	1	59	1.08
35883503--35883606	6	18.0	6	73	18	87	42	0	0	55	1.12
35884442--35884492	9	5.6	9	74	21	52	52	0	0	47	1.00
35884446--35884492	21	2.2	22	85	11	62	53	0	0	46	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35885267--35885606	163	2.1	163	89	0	520	27	19	12	40	1.87
35885708--35885915	29	7.2	28	71	13	118	34	31	2	31	1.73
35885708--35886136	58	7.4	58	85	3	497	32	30	4	32	1.77
35887830--35887902	28	2.4	29	82	11	76	47	19	4	28	1.67
35890250--35890284	18	1.9	17	88	11	52	31	0	2	65	1.07
35891456--35891498	17	2.5	18	81	7	54	69	2	0	27	1.00
35893369--35893546	71	2.5	71	86	3	236	29	17	6	46	1.72
35894065--35894260	95	2.0	97	87	3	281	45	2	2	49	1.27
35896248--35896290	20	2.2	20	83	8	52	44	16	16	23	1.86
35902818--35902873	16	3.5	16	85	0	58	48	5	19	26	1.70
35906251--35906289	21	1.9	20	84	5	51	28	7	12	51	1.67
35908412--35908501	41	2.2	38	79	11	90	36	2	4	56	1.32
35913577--35913622	18	2.6	18	83	10	58	47	0	2	50	1.13
35915807--35915861	24	2.3	24	80	0	65	43	3	3	49	1.37
35915847--35915879	17	1.9	17	100	0	66	36	0	9	54	1.32
35915929--35915999	14	5.3	14	83	16	105	39	28	14	18	1.89
35915929--35916001	27	2.7	27	97	2	139	39	27	13	19	1.89
35916053--35916089	15	2.2	17	77	22	51	16	51	13	18	1.76
35916058--35916089	15	2.1	15	100	0	64	18	53	12	15	1.73
35917259--35917323	33	2.0	32	81	6	76	16	18	9	55	1.67
35917597--35917805	30	7.0	30	91	3	307	37	25	2	34	1.71
35917815--35917969	30	5.2	29	71	18	131	31	29	3	35	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35917810--35917975	59	2.8	58	88	8	237	31	30	4	33	1.77
35932646--35932678	16	2.1	16	88	11	50	60	15	0	24	1.35
35939071--35939406	49	6.8	49	76	3	237	37	19	25	16	1.93
35939169--35939414	98	2.5	100	88	3	347	37	17	26	18	1.93
35939169--35939446	98	2.8	96	80	4	322	37	17	26	17	1.93
35948281--35948540	51	5.0	52	75	10	188	23	22	14	39	1.91
35948280--35948461	56	3.4	54	78	9	178	25	20	13	39	1.90
35950395--35950430	18	2.0	18	88	0	54	30	5	8	55	1.52
35950591--35950759	61	2.7	62	84	3	234	30	18	14	36	1.91
35954215--35954262	12	3.7	12	77	20	51	47	0	10	41	1.37
35954428--35954652	83	3.0	70	84	12	211	39	6	4	50	1.46
35954499--35954656	83	1.9	83	97	0	298	39	5	4	50	1.46
35956333--35956389	24	2.4	24	81	0	69	26	33	31	8	1.87
35957788--35958030	61	4.0	61	88	3	314	33	13	22	30	1.92
35957983--35958078	48	2.0	48	93	2	167	36	14	20	28	1.92
35957924--35958124	108	1.9	109	94	1	359	35	15	18	30	1.92
35958030--35958292	61	4.2	61	74	14	230	31	19	21	27	1.97
35958148--35958293	59	2.5	58	76	6	159	32	21	19	26	1.97
35959921--35960012	46	2.0	46	95	0	166	34	26	6	32	1.82
35966962--35967023	28	2.1	30	82	5	74	41	6	24	27	1.79
35967103--35967383	118	2.4	117	83	4	354	33	3	27	35	1.75
35967073--35967623	29	18.7	29	77	9	352	33	2	26	37	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35967101--35967636	60	9.1	60	76	9	324	34	2	25	36	1.72
35967364--35967623	30	8.7	30	83	6	197	35	2	23	38	1.68
35967369--35967623	91	2.8	90	88	2	352	36	2	21	39	1.67
35967010--35967636	29	21.2	30	76	10	322	34	2	25	37	1.71
35969243--35969292	6	8.5	6	82	12	68	54	0	2	44	1.11
35969243--35969314	11	6.4	11	75	12	58	56	1	1	40	1.16
35969228--35969325	17	5.5	17	81	11	106	56	2	3	38	1.27
35969273--35969320	21	2.2	22	82	14	64	60	2	0	37	1.09
35971818--35971918	17	5.9	17	75	2	94	37	4	3	53	1.41
35973560--35973764	29	7.1	29	75	16	169	34	26	1	37	1.68

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143