genome.fa.s11.2.7.7.80.10.50.1000.37.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032255.1 Gossypioides kirkii chromosome KI_13
Parameters: 2 7 7 80 10 50 1000
Length:  42971368

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   

This is table  37  of  143  ( 17057 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11237214--11237258	23	2.0	23	82	8	56	33	2	2	62	1.20
11245468--11245514	21	2.2	20	88	11	67	76	2	6	14	1.08
11246887--11246916	10	2.8	11	90	10	53	6	16	6	70	1.31
11254864--11254925	22	2.9	22	78	7	56	70	1	16	11	1.23
11254892--11254921	15	1.9	16	93	6	53	76	0	16	6	0.99
11261755--11261802	3	16.3	3	91	4	80	66	0	0	33	0.92
11262858--11262979	7	18.0	7	73	9	56	38	23	18	18	1.93
11262886--11262980	20	4.7	20	80	3	82	41	24	15	18	1.90
11262877--11262971	27	3.5	28	80	8	99	42	24	14	18	1.88
11264604--11264926	163	2.0	163	92	1	540	30	22	15	30	1.95
11279222--11279316	41	2.3	41	84	10	115	35	21	26	16	1.94
11280072--11280131	29	2.1	29	100	0	120	21	16	10	51	1.73
11281330--11281384	24	2.4	22	88	11	92	34	7	12	45	1.70
11281334--11281382	24	2.0	24	100	0	98	32	8	12	46	1.71
11282657--11282777	43	2.8	43	82	0	143	27	14	27	31	1.94
11287471--11287808	124	2.7	122	88	4	489	41	7	10	40	1.68
11296047--11296267	107	2.1	107	89	1	336	39	7	8	43	1.64
11296196--11296553	123	2.9	123	89	2	531	41	8	10	38	1.71
11297314--11297346	16	2.0	17	88	5	50	27	0	15	57	1.38
11315699--11315734	16	2.2	16	90	0	54	22	11	13	52	1.72
11320070--11320115	17	2.9	16	81	18	60	0	21	0	78	0.76
11332098--11332135	9	4.2	9	87	12	60	0	21	0	78	0.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11367109--11367148	21	2.0	21	90	5	64	57	0	42	0	0.98
11371774--11371830	26	2.2	26	80	0	69	21	15	21	42	1.89
11381724--11381784	3	20.3	3	77	12	63	63	0	34	1	1.04
11381732--11381772	15	2.7	15	96	0	73	63	0	36	0	0.95
11384758--11384868	56	2.0	56	83	0	141	20	20	30	27	1.98
11398409--11398439	14	2.2	14	94	0	53	35	19	12	32	1.90
11398442--11398476	15	2.3	15	85	0	52	42	20	8	28	1.81
11399023--11399070	17	2.7	17	74	6	51	37	16	14	31	1.89
11399551--11399604	21	2.6	21	76	5	56	33	22	11	33	1.89
11407375--11407559	41	4.4	42	78	6	162	24	26	11	37	1.89
11410622--11410775	63	2.4	63	84	0	200	29	9	29	31	1.88
11413275--11413428	30	5.1	29	72	12	98	33	7	22	36	1.82
11414293--11414323	12	2.6	12	89	0	53	32	0	19	48	1.49
11414293--11414339	8	5.8	8	83	11	51	36	2	12	48	1.53
11415320--11415460	48	2.9	48	89	0	201	22	20	14	42	1.88
11415246--11415583	171	2.0	170	86	2	473	21	21	15	41	1.90
11415368--11415781	123	3.4	123	86	3	564	21	19	17	40	1.91
11415828--11416623	45	18.3	45	76	12	698	27	18	22	31	1.97
11415864--11415930	34	2.0	34	87	0	98	22	23	17	35	1.95
11415828--11416044	80	2.7	80	96	0	389	24	19	21	34	1.96
11415944--11416010	34	2.0	34	91	5	109	20	20	19	38	1.93
11415982--11416623	226	2.9	223	80	9	702	27	18	23	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11416595--11416692	42	2.3	41	82	5	115	26	14	28	30	1.95
11416942--11417232	49	5.9	49	75	6	171	21	26	15	36	1.93
11416941--11417158	98	2.2	98	81	3	251	22	24	16	37	1.93
11418069--11418114	20	2.3	20	92	7	76	0	26	0	73	0.83
11418069--11418124	20	2.9	19	84	10	60	3	25	0	71	1.02
11419084--11419135	17	3.2	17	77	17	58	0	21	0	78	0.74
11423093--11423286	30	6.4	30	80	8	162	30	5	23	40	1.76
11423124--11423323	60	3.3	60	77	6	199	30	4	26	39	1.76
11423078--11423291	90	2.4	91	85	5	265	32	5	24	37	1.78
11423140--11423323	30	6.1	30	77	8	160	30	4	25	38	1.77
11423124--11423327	90	2.3	90	84	8	256	30	4	25	39	1.75
11424155--11424225	2	35.0	2	79	8	72	40	4	5	49	1.46
11458642--11458684	15	2.8	15	82	3	50	62	0	37	0	0.95
11463921--11464639	50	14.5	50	77	8	480	34	16	30	18	1.93
11464703--11464979	46	6.2	46	80	8	279	29	23	20	26	1.99
11464726--11464979	135	1.9	136	85	4	352	29	24	19	26	1.98
11465030--11465298	122	2.2	124	81	2	292	39	19	17	23	1.92
11465440--11465531	48	1.9	48	84	4	123	40	13	22	23	1.89
11465319--11465647	123	2.7	123	86	1	444	40	15	19	24	1.90
11465026--11465853	331	2.5	332	83	2	986	39	16	20	23	1.92
11465447--11465853	208	2.0	209	84	0	537	38	14	22	23	1.92
11465566--11465732	85	2.0	85	86	0	235	38	16	22	23	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11467727--11467961	60	4.0	59	76	7	203	34	28	2	34	1.69
11467688--11467949	90	3.0	87	79	10	248	34	28	2	34	1.70
11467684--11468065	30	12.9	29	72	11	174	33	26	2	36	1.72
11479742--11479769	3	9.3	3	100	0	56	67	0	0	32	0.91
11480472--11480511	10	4.0	10	83	0	53	2	35	0	62	1.09
11490786--11490834	26	1.9	25	87	4	71	16	0	10	73	1.09
11491199--11491238	13	3.1	13	85	0	53	42	2	17	37	1.63
11498629--11498913	41	7.0	41	88	0	392	36	11	25	26	1.90
11504103--11504137	13	2.7	13	86	0	52	45	0	8	45	1.34
11504838--11505029	79	2.4	79	88	0	276	19	16	29	34	1.94
11508739--11508794	28	2.0	28	100	0	112	53	14	10	21	1.70
11509819--11509859	22	1.9	21	85	5	55	60	7	9	21	1.52
11512605--11512647	21	2.0	21	86	9	59	34	37	4	23	1.76
11513444--11513574	37	3.5	37	84	6	158	31	28	24	16	1.96
11524048--11524087	18	2.3	18	86	4	55	22	15	7	55	1.65
11537664--11537781	37	3.2	37	82	2	148	36	31	19	12	1.89
11537676--11537789	37	3.1	37	83	2	149	36	30	18	14	1.90
11540572--11540628	17	3.4	16	74	11	51	49	12	26	12	1.75
11557498--11557734	51	4.6	51	88	0	330	34	13	22	29	1.93
11577243--11577283	22	1.9	21	85	5	55	63	7	7	21	1.45
11589306--11589358	26	2.0	26	85	0	70	26	16	24	32	1.97
11589647--11589707	25	2.4	25	94	0	104	32	14	29	22	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11596619--11596689	26	2.7	26	78	4	72	23	22	21	32	1.98
11597967--11598042	32	2.4	32	95	4	136	47	5	14	32	1.67
11616766--11616817	12	4.4	11	75	15	50	63	0	36	0	0.95
11616781--11616811	15	2.1	15	93	0	53	70	0	29	0	0.87
11617883--11617924	19	2.1	21	86	8	61	76	0	9	14	1.02
11625290--11625373	37	2.3	37	87	0	123	23	30	21	23	1.99
11625290--11625394	37	2.8	37	83	0	102	26	29	20	23	1.99
11627962--11627990	7	4.1	7	100	0	58	72	13	0	13	1.13
11645959--11646036	38	2.1	38	90	4	122	47	16	2	33	1.61
11649981--11650050	34	2.1	34	83	0	86	22	18	8	50	1.74
11665344--11665400	21	2.7	21	97	0	105	12	35	29	22	1.91
11666727--11666765	2	20.5	2	89	10	64	48	0	0	51	1.00
11666727--11666770	10	4.2	11	91	8	58	45	0	2	52	1.13
11668653--11668704	18	3.0	18	81	10	56	46	1	0	51	1.12
11671134--11671172	8	4.9	8	90	0	51	76	0	0	23	0.78
11672045--11672211	90	1.9	90	88	0	253	32	18	14	34	1.92
11674115--11674183	29	2.3	31	80	7	79	53	2	0	43	1.15
11675403--11675427	3	8.3	3	100	0	50	68	0	0	32	0.90
11676430--11676454	7	3.6	7	100	0	50	44	0	0	56	0.99
11676438--11676514	17	4.6	17	74	9	77	35	1	6	57	1.33
11676438--11676514	34	2.3	35	88	8	124	35	1	6	57	1.33
11676530--11676577	19	2.5	20	86	10	64	50	25	6	18	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11677184--11677224	19	2.1	20	86	13	59	60	0	0	39	0.96
11677399--11677439	2	20.5	2	100	0	82	51	0	0	48	1.00
11678684--11678826	29	4.8	29	81	5	137	37	24	1	36	1.64
11678695--11678977	59	4.8	58	78	9	179	35	23	4	37	1.74
11678682--11678886	30	6.9	30	76	9	147	36	23	2	37	1.69
11678843--11679093	29	8.7	28	72	11	161	31	26	7	35	1.84
11678754--11679063	29	10.6	28	73	11	180	32	24	6	36	1.82
11678755--11679061	116	2.6	115	79	11	313	32	23	6	36	1.82
11678928--11679117	87	2.2	87	81	7	208	30	26	7	34	1.85
11678872--11679063	58	3.3	56	84	8	244	30	25	8	36	1.85

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143