genome.fa.s11.2.7.7.80.10.50.1000.72.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032255.1 Gossypioides kirkii chromosome KI_13
Parameters: 2 7 7 80 10 50 1000
Length:  42971368

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   

This is table  72  of  143  ( 17057 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23433377--23433441	27	2.4	27	86	0	85	21	26	23	29	1.99
23438742--23438807	34	1.9	35	84	3	89	50	1	7	40	1.40
23438822--23438893	34	2.1	34	92	2	119	54	2	2	40	1.29
23448104--23448134	2	15.5	2	100	0	62	48	0	0	51	1.00
23448743--23448822	19	4.2	19	71	18	67	56	0	2	41	1.13
23452527--23452560	5	6.8	5	100	0	68	20	0	58	20	1.39
23452968--23453015	24	2.0	25	84	12	64	50	0	2	47	1.12
23453844--23453978	71	1.9	71	96	0	252	33	23	6	36	1.81
23454364--23454414	24	2.1	24	88	0	75	37	13	9	39	1.78
23454322--23454466	75	1.9	75	87	0	209	36	12	14	36	1.84
23456667--23456715	18	2.7	18	96	0	89	36	12	20	30	1.89
23456667--23456710	9	4.9	9	79	20	56	34	11	22	31	1.90
23457083--23457139	20	2.8	20	81	0	69	38	15	33	12	1.85
23460834--23460883	21	2.4	21	82	0	73	32	26	12	30	1.92
23461579--23461713	52	2.6	52	92	2	218	34	25	16	24	1.95
23468699--23468885	52	3.6	52	86	1	178	36	21	12	28	1.91
23470091--23470130	16	2.6	15	88	4	53	85	2	12	0	0.71
23471395--23471426	10	3.4	10	83	16	50	18	0	0	81	0.70
23471397--23471475	23	3.5	21	80	14	79	22	2	6	68	1.25
23474942--23475180	52	4.6	52	89	1	363	27	14	21	36	1.93
23477606--23477638	16	2.1	16	88	5	50	48	0	6	45	1.27
23479410--23479700	52	5.6	52	87	1	397	25	14	25	35	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23485851--23486093	52	4.7	50	88	6	319	27	13	24	34	1.93
23485851--23486093	104	2.3	104	87	6	352	27	13	24	34	1.93
23489854--23489946	42	2.2	42	96	1	168	47	7	6	38	1.58
23491953--23492243	52	5.6	52	86	0	377	36	21	14	26	1.92
23491952--23492243	156	1.9	156	87	1	433	36	21	14	26	1.92
23507895--23507932	14	2.7	14	84	11	51	10	18	2	68	1.30
23513493--23513522	7	4.3	7	100	0	60	26	60	0	13	1.34
23515579--23515722	43	3.4	41	79	8	128	36	12	27	24	1.91
23515627--23515816	43	4.5	43	80	5	190	34	12	27	26	1.92
23515671--23515807	42	3.2	41	78	8	132	32	11	29	26	1.91
23522743--23522842	43	2.3	43	87	0	137	34	10	31	25	1.89
23526594--23526646	18	2.9	18	71	0	52	41	24	13	20	1.88
23532734--23532786	18	2.9	18	76	23	58	54	0	41	3	1.18
23533061--23533109	20	2.5	19	76	3	53	57	12	30	0	1.36
23533186--23533229	18	2.5	17	85	3	52	18	11	11	59	1.61
23545369--23545406	3	12.7	3	100	0	76	65	0	0	34	0.93
23554904--23554973	31	2.1	34	84	10	92	41	12	25	20	1.88
23556184--23556556	58	6.4	59	93	2	630	34	3	30	32	1.75
23556186--23556556	117	3.2	117	94	1	640	34	3	29	32	1.74
23556191--23556581	29	13.4	29	69	24	136	35	3	28	32	1.74
23556755--23556980	97	2.4	97	94	3	397	48	13	17	20	1.81
23558541--23558613	6	12.2	6	79	16	80	52	0	2	45	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23558546--23558607	11	5.7	11	75	21	51	54	0	3	41	1.16
23558549--23558608	31	1.9	31	93	6	104	53	0	3	43	1.17
23558550--23558620	17	4.4	17	80	10	85	56	0	2	40	1.14
23558891--23558952	30	2.1	30	96	0	115	22	4	16	56	1.59
23570164--23570338	87	2.0	87	98	0	341	36	21	16	26	1.94
23570733--23570767	5	6.6	5	87	12	52	80	0	2	17	0.84
23570732--23570767	17	2.2	16	95	5	63	80	0	2	16	0.83
23573271--23573307	12	3.0	12	92	7	65	59	8	0	32	1.27
23573261--23573305	7	6.7	7	78	19	51	57	6	2	33	1.37
23573261--23573305	13	3.4	13	87	12	65	57	6	2	33	1.37
23573258--23573298	20	2.2	19	86	8	57	60	4	2	31	1.30
23573541--23573603	21	2.9	22	85	4	101	33	19	14	33	1.91
23573929--23574036	50	2.2	50	89	1	164	40	0	9	49	1.41
23573998--23574047	18	2.8	18	78	3	66	46	0	2	52	1.12
23578303--23578437	9	14.4	9	68	16	60	30	2	1	65	1.17
23578297--23578413	30	4.0	29	78	8	103	36	2	0	59	1.17
23578499--23578754	91	2.8	89	83	3	316	29	9	20	40	1.84
23579184--23579249	31	2.1	31	88	0	96	36	12	7	43	1.70
23579528--23579591	31	2.1	30	82	5	76	35	10	10	42	1.75
23580563--23580664	29	3.6	29	86	5	127	45	2	19	32	1.66
23587614--23587660	18	2.6	18	100	0	94	27	21	23	27	1.99
23609839--23609876	20	1.9	20	94	0	67	50	2	5	42	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23611157--23611272	9	12.4	9	67	17	51	32	2	0	63	1.14
23611232--23611274	17	2.4	18	81	14	54	27	0	2	69	1.00
23614754--23614800	24	2.0	25	87	8	71	21	10	2	65	1.33
23614892--23614975	6	13.5	6	73	19	66	16	1	4	77	1.00
23614892--23614972	13	6.5	13	72	19	57	17	1	4	76	1.03
23615090--23615131	20	2.1	20	90	0	66	21	0	2	76	0.90
23615078--23615131	14	3.8	14	77	18	58	20	1	1	75	0.98
23618299--23618352	2	27.0	2	84	0	72	53	3	0	42	1.18
23618299--23618352	20	2.7	20	94	0	90	53	3	0	42	1.18
23618294--23618356	8	7.9	8	87	0	63	52	6	0	41	1.27
23618306--23618359	12	4.8	12	78	17	62	51	7	0	40	1.30
23619288--23619528	30	8.1	30	79	9	233	39	24	1	34	1.66
23619288--23619528	60	4.0	59	79	7	261	39	24	1	34	1.66
23619291--23619528	90	2.6	89	84	3	307	39	23	1	34	1.65
23628816--23629541	39	18.6	39	72	9	464	23	30	21	24	1.99
23628816--23629561	78	9.6	78	83	3	826	23	30	21	24	1.99
23631445--23631701	59	4.3	59	81	5	207	38	23	3	33	1.73
23631450--23631743	89	3.3	90	83	4	328	39	22	3	34	1.71
23631445--23631743	30	10.1	30	81	4	259	38	23	3	34	1.72
23631753--23631822	27	2.6	26	80	10	70	38	30	2	28	1.71
23631830--23631894	30	2.2	30	86	2	87	38	16	3	41	1.64
23631830--23631903	30	2.5	29	82	6	85	40	18	2	37	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23635491--23635560	23	3.1	23	65	8	63	51	11	18	18	1.75
23635829--23635957	20	6.4	20	81	3	134	27	17	12	43	1.84
23635829--23635970	40	3.5	40	79	3	160	26	16	12	45	1.83
23635835--23635971	60	2.3	60	84	0	175	26	16	12	45	1.82
23636562--23636924	102	3.6	102	79	10	341	36	17	17	27	1.93
23638849--23638887	16	2.4	17	86	4	53	48	35	5	10	1.59
23640151--23640208	15	3.8	15	71	10	55	18	5	1	74	1.10
23640131--23640174	21	2.1	21	83	8	54	18	2	2	77	0.98
23641807--23642180	198	1.9	198	89	3	583	42	11	14	31	1.82
23647503--23647549	17	2.7	18	78	15	55	70	4	4	21	1.22
23647502--23647551	18	2.8	18	79	14	59	70	4	4	22	1.21
23648454--23648509	13	4.6	13	70	22	50	76	5	5	12	1.12
23648528--23648573	24	1.9	24	86	8	67	67	0	15	17	1.24
23650376--23650579	52	4.0	52	74	13	170	26	18	18	36	1.94
23650357--23650571	50	4.2	50	73	11	159	25	20	17	36	1.94
23650407--23650735	101	3.2	101	79	3	327	27	19	17	35	1.94
23651477--23651572	26	3.7	26	84	0	129	26	22	21	29	1.99
23655288--23655375	26	3.4	26	78	6	81	34	21	15	28	1.94
23656713--23656761	8	5.8	8	79	11	53	2	16	0	81	0.78
23656714--23656759	18	2.4	19	85	10	67	2	15	0	82	0.76
23656713--23656761	16	2.9	16	82	14	62	2	16	0	81	0.78
23666086--23666115	16	1.9	16	93	6	53	20	16	3	60	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23676218--23676260	22	2.0	22	86	9	61	48	9	32	9	1.67
23678814--23678854	21	2.0	21	95	0	73	14	26	7	51	1.69
23679460--23679694	43	5.4	42	80	9	229	27	28	19	25	1.98
23679490--23679668	92	1.9	92	85	4	245	26	27	19	26	1.99
23679532--23679627	49	2.0	49	89	4	149	25	28	20	26	1.99
23684977--23685060	41	2.1	40	86	2	114	20	30	16	32	1.95
23686185--23686244	29	2.0	31	84	9	81	55	11	5	28	1.57
23687571--23687595	13	1.9	13	100	0	50	48	8	4	40	1.51
23710189--23710242	26	2.1	26	89	6	83	27	20	20	31	1.97
23710230--23710319	38	2.4	38	79	5	103	34	14	21	30	1.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143