genome.fa.s11.2.7.7.80.10.50.1000.32.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032255.1 Gossypioides kirkii chromosome KI_13
Parameters: 2 7 7 80 10 50 1000
Length:  42971368

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   

This is table  32  of  143  ( 17057 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9413659--9413701	13	3.7	12	79	14	54	30	0	0	69	0.88
9421297--9421331	12	2.9	12	91	8	54	28	0	0	71	0.86
9421338--9422187	289	3.0	288	92	1	1388	29	14	13	42	1.84
9424025--9424051	6	4.5	6	100	0	54	33	66	0	0	0.92
9425256--9425827	39	14.7	39	70	6	284	24	29	20	26	1.99
9425334--9425814	117	4.1	118	72	9	371	24	29	19	26	1.98
9425254--9425827	78	7.4	78	80	2	539	24	29	20	26	1.99
9426235--9426307	17	4.3	17	85	3	85	35	1	4	58	1.25
9426235--9426316	34	2.4	34	89	4	121	36	1	6	56	1.32
9426244--9426307	17	3.8	17	87	2	94	34	1	4	59	1.28
9426244--9426316	17	4.4	16	83	11	76	35	1	6	56	1.35
9428027--9428543	29	17.6	29	76	11	256	32	27	4	35	1.77
9428063--9428499	58	7.4	58	75	10	284	31	27	4	36	1.77
9428027--9428543	59	8.8	57	75	9	335	32	27	4	35	1.77
9429041--9429434	196	2.0	196	96	0	734	34	19	11	34	1.89
9430828--9430857	15	2.0	15	93	0	51	30	0	30	40	1.57
9433066--9433252	5	37.4	5	71	8	112	36	15	23	24	1.93
9433058--9433252	20	9.5	20	73	11	126	35	15	23	24	1.94
9433245--9433300	29	1.9	29	92	0	94	35	12	28	23	1.91
9436106--9436176	7	10.0	7	77	18	67	53	0	15	30	1.42
9436106--9436176	14	4.9	14	80	16	74	53	0	15	30	1.42
9436106--9436170	21	3.1	21	82	8	87	52	0	15	32	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9436974--9437209	23	10.5	22	75	14	164	42	21	24	11	1.86
9443347--9443391	21	2.1	21	88	8	65	26	8	11	53	1.65
9443815--9443858	15	2.8	16	80	13	56	52	0	4	43	1.22
9443934--9443994	20	3.3	18	76	13	61	49	4	3	42	1.40
9448522--9448570	21	2.3	21	92	0	89	26	20	30	22	1.98
9450629--9450754	51	2.5	51	97	0	234	29	24	15	30	1.95
9456491--9456538	22	2.2	21	77	3	51	50	0	14	35	1.44
9457381--9457534	41	3.8	41	88	0	209	39	10	24	25	1.87
9463662--9463709	22	2.2	21	77	3	51	50	0	14	35	1.44
9464514--9464711	41	4.8	41	82	4	222	39	11	24	24	1.88
9472664--9473236	39	14.7	39	72	7	360	24	30	19	24	1.98
9472664--9473236	78	7.3	77	84	2	549	24	30	19	24	1.98
9472664--9473220	156	3.6	156	81	3	615	24	30	19	25	1.98
9473653--9473742	17	5.4	16	84	11	101	35	1	5	57	1.29
9473644--9473742	34	2.9	33	89	5	137	36	1	5	57	1.27
9474451--9474475	11	2.3	11	100	0	50	76	0	0	24	0.80
9475550--9475933	29	13.1	29	79	9	309	32	26	5	36	1.79
9475555--9475936	59	6.5	59	77	9	320	32	25	5	36	1.79
9475550--9475927	88	4.3	87	78	10	333	32	25	5	36	1.79
9476238--9476426	96	1.9	98	93	2	328	29	16	16	37	1.91
9480911--9481101	10	19.7	10	73	10	74	38	16	22	23	1.93
9480947--9481061	15	7.7	15	67	19	53	35	15	24	24	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9480998--9481182	5	37.2	5	70	8	92	37	16	23	22	1.93
9482665--9482921	23	11.4	23	77	11	192	42	22	22	12	1.86
9489106--9489181	23	3.2	23	77	12	73	47	17	23	11	1.80
9489146--9489220	39	1.9	39	86	5	107	46	18	22	12	1.82
9489185--9489300	23	5.0	24	84	8	125	42	22	23	12	1.87
9491182--9491236	11	5.1	11	80	10	60	25	1	1	70	1.06
9491182--9491217	12	3.1	12	92	4	56	22	2	0	75	0.94
9491193--9491243	20	2.7	20	81	6	61	27	0	1	70	0.98
9491982--9492035	18	2.6	21	77	19	60	35	0	5	59	1.21
9491993--9492034	18	2.2	20	87	8	61	35	0	4	59	1.19
9492760--9492799	21	1.9	21	90	10	64	25	5	15	55	1.60
9497785--9497834	21	2.4	21	83	9	68	26	8	18	48	1.75
9498377--9498437	20	3.3	18	76	13	61	49	4	3	42	1.40
9505726--9505861	51	2.7	51	95	1	238	29	25	13	31	1.94
9511573--9511620	22	2.2	21	77	3	51	50	0	14	35	1.44
9512460--9512613	41	3.8	41	85	1	184	41	11	24	22	1.87
9516263--9516586	158	2.1	158	84	4	422	33	23	19	24	1.97
9519238--9519289	25	2.0	26	92	3	88	46	3	7	42	1.51
9520218--9520250	13	2.4	14	90	10	50	42	3	0	54	1.15
9520364--9520421	23	2.5	22	74	17	55	58	3	6	31	1.41
9523848--9523889	23	1.9	23	85	9	61	66	2	7	23	1.28
9540155--9540231	21	3.7	21	75	0	55	31	24	15	28	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9541985--9542017	2	16.5	2	100	0	66	51	0	0	48	1.00
9546106--9546551	194	2.3	195	85	2	567	26	26	19	28	1.99
9550609--9550650	21	2.0	22	90	4	68	21	19	9	50	1.75
9553014--9553066	21	2.5	21	81	6	63	30	24	13	32	1.93
9555115--9555190	35	2.2	35	92	0	125	43	14	15	26	1.85
9556987--9557039	20	2.6	20	81	3	61	67	1	0	30	1.01
9559937--9560018	9	8.7	9	76	9	65	71	1	1	25	1.00
9559939--9559990	10	5.4	10	79	9	54	75	0	0	25	0.81
9559937--9560018	19	4.3	19	83	14	91	71	1	1	25	1.00
9560069--9560102	16	2.1	17	88	5	52	64	5	0	29	1.17
9568996--9569025	14	2.1	14	93	0	51	56	0	0	43	0.99
9575312--9575345	6	5.7	6	92	0	50	64	0	20	14	1.28
9578058--9578087	13	2.2	14	94	5	53	76	3	6	13	1.11
9579519--9579572	21	2.5	21	84	6	63	12	11	0	75	1.04
9584809--9584861	22	2.4	22	96	0	97	32	18	18	30	1.96
9585082--9585121	21	2.0	21	90	5	64	45	15	15	25	1.84
9585303--9585342	21	2.0	21	90	5	64	45	15	15	25	1.84
9584968--9585629	221	3.0	220	96	1	1207	45	14	15	24	1.84
9585524--9585563	21	2.0	21	90	5	64	45	15	15	25	1.84
9586476--9586533	17	3.4	17	77	13	55	53	10	24	12	1.68
9586972--9587031	12	4.9	12	80	10	68	1	31	1	65	1.13
9598356--9598420	26	2.5	26	87	2	105	32	26	3	38	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9601811--9601875	26	2.5	26	92	2	114	32	27	3	36	1.72
9605338--9605373	6	6.0	6	96	0	54	33	16	5	44	1.71
9611700--9611727	12	2.3	12	100	0	56	21	28	28	21	1.99
9614632--9614687	26	2.2	26	87	6	78	28	26	19	25	1.99
9615777--9615810	17	2.0	17	94	0	59	52	14	17	14	1.74
9616240--9616282	21	2.0	21	82	8	52	6	25	4	62	1.40
9618220--9618273	26	2.1	26	82	0	63	27	24	22	25	2.00
9631015--9631064	20	2.5	20	87	6	66	52	0	10	38	1.35
9631925--9632092	51	3.3	51	88	1	228	29	15	25	30	1.96
9632627--9632686	21	2.9	21	76	0	66	36	15	20	28	1.92
9646580--9646682	29	3.6	29	79	12	140	29	27	12	31	1.93
9646573--9646705	57	2.3	57	100	0	266	30	25	15	27	1.96
9646573--9646705	29	4.7	28	73	16	130	30	25	15	27	1.96
9649652--9649698	2	24.0	2	86	4	60	46	4	2	46	1.34
9649644--9649698	27	2.0	27	100	0	110	43	7	3	45	1.49
9650422--9650551	29	4.4	28	79	11	109	34	26	3	35	1.72
9659131--9659164	14	2.4	14	90	0	50	50	2	5	41	1.42
9663055--9663087	12	2.8	12	95	0	57	75	0	9	15	1.03
9664673--9664719	24	2.0	25	87	8	71	8	42	0	48	1.33
9668285--9668360	27	2.8	27	80	15	86	52	14	9	23	1.70
9668802--9668834	14	2.2	16	89	10	52	45	0	6	48	1.27
9672269--9672302	7	4.7	7	96	3	59	38	44	0	17	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9676189--9676226	6	6.5	6	96	3	69	18	50	31	0	1.47
9676387--9676429	21	2.0	21	86	0	59	65	0	0	34	0.93
9677081--9677125	24	1.9	23	90	4	72	48	2	40	8	1.47
9678727--9678777	17	3.0	17	72	11	59	82	0	7	9	0.85
9685396--9685434	15	2.6	15	87	0	60	38	28	12	20	1.89
9689205--9689248	24	1.9	23	86	9	63	68	4	13	13	1.36
9691945--9692058	23	5.0	23	88	2	158	45	14	3	35	1.63
9695663--9695702	21	1.9	21	84	0	53	2	37	5	55	1.35
9713215--9713297	22	3.8	22	80	6	105	42	26	16	14	1.87
9713811--9713849	19	2.1	19	85	9	53	20	12	5	61	1.50

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143