genome.fa.s11.2.7.7.80.10.50.1000.33.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032255.1 Gossypioides kirkii chromosome KI_13
Parameters: 2 7 7 80 10 50 1000
Length:  42971368

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   

This is table  33  of  143  ( 17057 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9715197--9715228	3	10.7	3	100	0	64	31	0	0	68	0.90
9721751--9722017	41	6.4	41	83	3	266	23	26	11	38	1.89
9722764--9722811	22	2.2	21	81	3	60	37	14	0	47	1.44
9734341--9734600	41	6.2	41	84	3	288	24	25	11	38	1.88
9735404--9735451	22	2.2	21	77	3	51	37	12	0	50	1.41
9737180--9737204	11	2.3	11	100	0	50	40	8	16	36	1.77
9738156--9738224	24	3.0	22	75	12	66	28	10	5	55	1.56
9740140--9740186	24	2.0	24	95	0	85	27	8	8	55	1.59
9744879--9744911	11	3.0	11	90	0	57	33	0	3	63	1.10
9744902--9744931	14	2.1	14	93	0	51	20	6	3	70	1.25
9746809--9746838	13	2.2	14	94	5	53	70	13	0	16	1.18
9748469--9748515	5	9.0	5	78	17	51	21	2	0	76	0.89
9748471--9748515	16	2.8	17	80	10	58	22	2	0	75	0.91
9753420--9753490	6	11.7	6	71	14	56	76	1	21	1	0.95
9753420--9753473	19	2.9	18	83	5	63	75	1	20	1	0.98
9754414--9754872	146	3.1	147	87	2	613	34	16	27	21	1.94
9754414--9754887	147	3.2	146	86	3	603	35	15	27	21	1.94
9754414--9754894	49	9.8	49	81	2	502	35	16	27	20	1.94
9755104--9755525	189	2.2	190	86	3	575	31	17	26	25	1.97
9755185--9755504	96	3.4	93	68	18	230	29	16	27	26	1.97
9755744--9755811	33	2.1	33	94	0	118	30	23	17	27	1.97
9755702--9756122	90	4.9	79	75	15	260	33	24	16	25	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9755777--9757155	45	30.9	45	80	4	1238	31	24	17	26	1.97
9755777--9756991	136	9.0	134	79	4	1131	31	24	17	26	1.97
9764089--9764283	28	7.2	28	73	13	131	38	14	26	19	1.91
9764076--9764312	52	4.5	53	73	13	150	39	16	26	18	1.91
9764077--9764363	80	3.6	80	85	0	340	37	15	26	19	1.92
9764300--9764364	28	2.3	28	81	0	76	33	16	26	23	1.96
9766744--9766787	15	2.9	15	83	6	52	4	18	0	77	0.94
9789987--9790025	3	13.0	3	84	10	53	71	0	28	0	0.86
9789987--9790025	15	2.6	15	88	12	62	71	0	28	0	0.86
9790418--9790471	17	3.2	17	82	10	58	16	12	11	59	1.61
9795811--9795912	52	2.0	52	84	0	132	35	17	28	18	1.94
9795877--9796215	28	12.5	28	72	8	227	38	15	25	20	1.92
9795822--9796188	80	4.6	80	83	0	455	38	15	26	19	1.92
9798128--9798160	11	3.0	11	90	0	57	33	0	3	63	1.10
9798151--9798180	14	2.1	14	93	0	51	20	6	3	70	1.25
9799335--9799386	21	2.5	21	100	0	104	38	25	7	28	1.83
9810383--9810422	17	2.4	17	84	12	55	70	0	0	30	0.88
9817236--9817270	15	2.3	15	85	0	52	2	11	0	85	0.69
9828395--9828440	12	3.5	13	85	11	58	2	21	0	76	0.90
9835701--9835751	17	3.0	17	88	0	75	19	27	9	43	1.82
9846040--9846076	2	18.5	2	94	0	65	48	0	2	48	1.15
9848061--9848105	19	2.4	19	81	7	56	37	0	4	57	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9848908--9848967	22	2.8	22	82	7	70	15	10	3	71	1.25
9848912--9848968	21	2.6	22	81	8	64	14	8	3	73	1.20
9849526--9849568	21	2.0	22	95	4	79	13	9	4	72	1.26
9850878--9850918	20	2.0	20	85	0	55	41	17	12	29	1.85
9850889--9850927	21	1.9	20	89	5	60	46	15	12	25	1.81
9854950--9854987	13	2.9	13	77	14	51	18	7	0	73	1.06
9856511--9856555	19	2.4	19	81	7	56	37	0	4	57	1.19
9857357--9857416	22	2.8	22	82	7	70	15	10	3	71	1.25
9857361--9857417	21	2.6	22	81	8	64	14	8	3	73	1.20
9858134--9858407	23	12.0	23	87	3	392	48	13	3	34	1.60
9866897--9866935	16	2.4	17	91	4	62	61	0	0	38	0.96
9867636--9867668	15	2.3	14	94	5	57	75	3	0	21	0.93
9871947--9872026	38	2.1	38	95	0	142	31	26	20	22	1.98
9874211--9874244	17	2.0	17	94	0	59	14	17	14	52	1.74
9878036--9878070	17	2.1	17	89	10	54	54	14	17	14	1.72
9879101--9879128	14	2.0	14	100	0	56	7	35	0	57	1.26
9891519--9891572	21	2.6	21	82	5	65	29	11	25	33	1.91
9899223--9899259	17	2.1	19	85	10	51	13	13	8	64	1.48
9926519--9926564	23	2.0	24	86	4	67	32	26	15	26	1.95
9926598--9926683	14	6.1	15	73	11	65	22	18	27	31	1.97
9926643--9926683	21	1.9	22	90	5	66	21	14	29	34	1.93
9927684--9927708	13	1.9	13	100	0	50	24	4	0	72	1.02
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9931125--9931229	13	8.0	13	74	14	81	40	17	2	39	1.64
9931139--9931216	40	2.0	40	86	0	111	42	17	2	37	1.64
9931126--9931229	53	2.0	53	86	0	145	41	17	2	38	1.64
9935076--9935132	28	2.0	28	83	10	71	63	10	8	17	1.51
9935092--9935152	29	2.1	29	82	8	72	63	8	11	16	1.49
9935429--9935499	29	2.4	30	85	2	81	40	2	19	36	1.67
9937230--9937386	85	1.8	85	84	2	217	21	19	15	43	1.88
9937108--9937511	210	1.9	210	88	0	610	22	20	16	40	1.91
9939313--9939824	85	6.0	84	70	12	308	23	22	16	37	1.94
9939406--9939530	48	2.6	48	90	0	196	23	27	16	32	1.96
9939561--9939728	48	3.7	47	71	19	142	22	20	15	41	1.90
9939196--9939735	256	2.1	258	86	2	755	24	22	16	37	1.93
9939654--9941501	209	8.9	208	76	8	1583	24	19	16	38	1.93
9939454--9940029	294	2.0	293	85	3	775	23	20	17	39	1.92
9939903--9940266	190	1.9	190	88	2	543	25	19	16	38	1.92
9940272--9940505	84	2.8	85	84	3	328	23	21	14	39	1.91
9940439--9940548	48	2.3	48	80	0	121	23	20	14	40	1.90
9940388--9940655	133	2.0	133	84	1	349	25	20	16	38	1.92
9940688--9940854	85	2.0	85	84	0	217	24	20	17	37	1.93
9940897--9941148	85	3.0	85	81	1	308	24	21	15	38	1.92
9940991--9941290	133	2.3	133	85	1	395	24	20	18	37	1.94
9940079--9941501	636	2.2	634	87	1	1965	25	20	16	37	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9941504--9941693	92	2.1	92	88	2	283	23	19	23	33	1.97
9941504--9941693	46	4.1	45	82	4	245	23	19	23	33	1.97
9942180--9942299	42	2.8	44	82	9	126	17	26	14	41	1.87
9943225--9943270	10	4.7	10	86	10	60	2	19	0	78	0.86
9943234--9943272	9	4.3	9	90	9	53	2	15	0	82	0.79
9943225--9943270	19	2.4	19	88	3	65	2	19	0	78	0.86
9948808--9949018	30	7.1	29	73	14	103	36	4	24	34	1.76
9949369--9949402	8	4.1	8	88	3	50	0	29	0	70	0.87
9951582--9951733	39	3.9	39	82	0	178	39	22	15	22	1.92
9951595--9951769	78	2.2	78	80	2	190	39	19	17	24	1.92
9955757--9955798	18	2.3	18	88	8	59	54	11	19	14	1.70
9965418--9965460	21	2.0	21	86	8	61	18	9	37	34	1.83
9981502--9981617	57	2.0	57	98	0	223	34	25	17	23	1.96
9992451--9992492	18	2.3	18	87	0	57	30	23	19	26	1.98
10006770--10006794	13	1.9	13	100	0	50	24	16	12	48	1.79
10012904--10013024	43	2.8	43	92	1	197	36	19	9	33	1.85
10018637--10018754	58	2.1	57	82	3	139	57	9	16	16	1.64
10018757--10018797	22	1.9	21	90	5	64	56	0	26	17	1.41
10019812--10019845	17	2.0	17	88	0	50	55	11	8	23	1.63
10020069--10020196	18	7.1	18	86	0	166	21	17	25	35	1.95
10021393--10021419	13	2.1	13	100	0	54	55	7	14	22	1.64
10022359--10022392	18	1.9	18	88	5	52	52	11	17	17	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10022852--10022899	15	3.4	15	76	23	59	2	25	0	72	0.95
10022856--10022913	12	5.1	11	78	17	57	1	27	0	70	0.97
10022852--10022913	27	2.3	27	84	13	83	1	27	0	70	0.96
10033766--10033790	10	2.5	10	100	0	50	28	16	32	24	1.96
10050844--10050891	24	2.0	24	84	12	62	70	4	8	16	1.27
10056819--10056852	17	2.0	17	88	0	50	52	5	20	20	1.67
10067063--10067121	18	3.3	18	82	0	73	42	25	13	18	1.87
10080438--10080468	14	2.3	14	94	5	55	35	9	25	29	1.88
10081986--10082017	12	2.6	12	95	5	55	0	15	3	81	0.82
10092113--10092235	50	2.5	49	81	5	131	38	16	22	22	1.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143