genome.fa.s11.2.7.7.80.10.50.1000.131.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032255.1 Gossypioides kirkii chromosome KI_13
Parameters: 2 7 7 80 10 50 1000
Length:  42971368

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   

This is table  131  of  143  ( 17057 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38541378--38541428	13	3.9	13	74	7	50	45	35	1	17	1.60
38541805--38541846	18	2.2	20	87	8	61	47	33	0	19	1.49
38544451--38544682	93	2.5	93	79	5	231	34	9	13	42	1.77
38545266--38545295	12	2.4	12	94	5	51	23	0	0	76	0.78
38552363--38552793	219	2.0	220	91	0	711	17	28	18	35	1.93
38553852--38553882	2	15.5	2	100	0	62	51	0	0	48	1.00
38556320--38556358	19	2.1	19	90	0	60	61	0	0	38	0.96
38556943--38557014	20	3.7	19	87	7	92	56	5	0	37	1.22
38558087--38558132	21	2.1	22	84	11	60	32	0	8	58	1.28
38558087--38558131	20	2.1	22	84	8	58	33	0	8	57	1.30
38570316--38570345	3	10.0	3	92	0	51	33	3	33	30	1.74
38580552--38580589	17	2.3	17	86	4	51	50	15	2	31	1.58
38583929--38583996	19	3.4	19	76	11	82	42	4	4	48	1.43
38583914--38583997	41	2.0	41	100	0	168	45	4	7	42	1.52
38585863--38585895	12	2.6	13	90	4	50	30	0	0	69	0.88
38587234--38587295	14	4.7	14	70	18	53	40	32	4	22	1.75
38587795--38587825	2	15.5	2	100	0	62	48	0	0	51	1.00
38587901--38587926	7	3.7	7	100	0	52	73	0	15	11	1.11
38594401--38594548	72	2.1	72	100	0	296	20	25	9	44	1.81
38599960--38600006	25	1.9	24	86	4	67	65	4	0	29	1.11
38606903--38606939	16	2.3	16	86	13	58	40	0	0	59	0.97
38608995--38609054	14	4.1	14	79	14	68	65	3	1	30	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38608991--38609051	29	2.1	30	96	3	115	67	3	3	26	1.22
38608995--38609054	15	4.1	15	79	14	72	65	3	1	30	1.19
38608988--38609075	14	6.4	14	73	19	62	67	2	2	28	1.15
38609474--38609810	60	5.7	59	80	4	331	29	18	14	38	1.90
38609450--38609810	119	3.0	118	82	5	424	29	17	14	38	1.89
38612207--38612259	24	2.2	24	83	6	63	39	5	5	49	1.50
38612269--38612602	94	3.5	94	93	0	560	41	6	2	48	1.45
38612691--38612754	22	3.0	22	82	11	78	39	32	7	20	1.81
38613969--38614021	20	2.8	18	78	18	54	24	3	1	69	1.15
38614665--38614736	12	6.0	12	76	0	72	25	31	34	8	1.85
38614665--38614734	36	1.9	36	85	0	95	24	32	34	8	1.86
38615194--38615315	30	4.1	30	85	0	154	27	4	3	63	1.30
38615270--38615315	18	2.5	18	80	19	51	30	2	2	65	1.16
38616153--38616512	59	6.1	60	76	12	262	40	13	16	29	1.87
38616179--38616461	60	4.8	58	78	12	220	40	13	16	30	1.86
38616152--38616434	121	2.4	120	80	7	308	39	14	17	28	1.89
38621045--38621258	30	7.2	30	64	21	103	36	6	27	29	1.81
38621038--38621294	59	4.4	59	86	1	354	35	6	28	30	1.82
38621038--38621308	30	9.2	30	65	21	101	34	6	28	29	1.83
38621415--38621736	162	2.0	163	92	2	540	42	14	17	25	1.87
38623458--38623509	27	1.9	27	84	7	70	32	1	3	61	1.25
38623498--38623565	6	11.3	6	78	12	68	54	2	1	41	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38623500--38623559	31	1.9	31	89	0	93	55	3	1	40	1.27
38623501--38623574	17	4.6	16	78	11	80	58	2	1	37	1.21
38623539--38623593	28	2.0	28	85	0	74	58	5	0	36	1.21
38623545--38623603	28	2.1	28	80	0	64	61	6	1	30	1.32
38624995--38625034	18	2.2	18	86	8	55	57	2	10	30	1.45
38627406--38627443	19	2.0	19	89	0	58	23	5	2	68	1.23
38631610--38631677	31	2.2	31	89	5	102	32	14	10	42	1.80
38637450--38637487	16	2.4	16	86	4	51	47	2	0	50	1.15
38637560--38637587	3	9.3	3	100	0	56	67	0	0	32	0.91
38645113--38645141	6	4.8	6	100	0	58	34	13	0	51	1.42
38655747--38655818	31	2.3	31	85	0	90	43	9	4	43	1.56
38662384--38662429	24	2.0	24	91	4	76	36	0	6	56	1.25
38662923--38662949	11	2.5	11	100	0	54	59	11	0	29	1.32
38665480--38665522	18	2.4	18	88	0	59	53	18	0	27	1.45
38674501--38674568	32	2.2	30	82	10	82	36	0	0	63	0.95
38677003--38677054	20	2.5	21	79	20	56	36	1	0	61	1.07
38682367--38682525	86	1.9	84	86	2	228	35	15	18	29	1.92
38693448--38693481	17	2.0	17	94	0	59	38	11	0	50	1.39
38693449--38693487	17	2.3	17	86	0	51	38	15	0	46	1.46
38703937--38703978	22	1.9	22	95	0	75	28	2	2	66	1.16
38704634--38704697	29	2.2	29	83	5	85	50	1	0	48	1.10
38707008--38707070	24	2.6	24	87	0	81	50	6	14	28	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38708971--38709042	24	3.0	24	78	10	74	55	6	9	27	1.58
38709054--38709085	16	2.0	16	100	0	64	43	6	12	37	1.68
38719927--38719992	6	10.8	6	83	15	66	84	4	9	1	0.81
38719955--38719993	1	39.0	1	84	0	51	92	0	7	0	0.39
38719914--38719980	31	2.2	31	86	0	98	83	5	5	4	0.90
38720870--38720900	2	15.0	2	93	6	53	48	0	3	48	1.17
38721038--38721165	43	3.0	42	85	6	170	35	12	21	31	1.90
38721038--38721152	41	2.7	43	88	5	164	34	12	21	31	1.90
38730421--38730596	92	1.9	92	98	0	343	27	33	23	14	1.94
38743419--38743444	2	13.0	2	100	0	52	50	0	0	50	1.00
38746807--38746857	17	2.9	18	80	11	70	21	35	23	19	1.96
38748621--38749528	463	2.0	463	97	0	1710	32	12	24	30	1.91
38749973--38750331	67	5.4	67	80	5	363	36	13	23	27	1.92
38749973--38750331	134	2.7	132	82	3	414	36	13	23	27	1.92
38752868--38752905	20	2.0	19	90	10	60	42	5	0	52	1.24
38752833--38752905	18	3.9	18	79	16	60	35	5	1	57	1.30
38753018--38753064	25	2.0	24	88	12	71	63	4	0	31	1.13
38762582--38762637	10	6.1	10	73	25	52	48	0	0	51	1.00
38762580--38762653	34	2.2	34	92	0	121	43	2	0	54	1.14
38763661--38763723	24	2.6	24	89	0	99	23	14	11	50	1.74
38766176--38766260	31	2.8	29	79	8	98	43	11	9	35	1.74
38768227--38768338	42	2.6	41	79	6	118	27	25	21	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38768262--38768370	42	2.6	41	78	7	103	29	22	22	24	1.99
38768809--38768860	27	2.0	27	88	3	79	65	0	1	32	1.04
38769012--38769153	71	2.0	72	90	1	223	33	7	13	45	1.70
38772494--38772520	9	3.0	9	100	0	54	44	0	0	55	0.99
38778878--38778922	6	7.5	6	87	0	54	48	0	28	22	1.50
38781036--38781084	16	3.0	16	80	14	55	22	6	10	61	1.50
38784171--38784204	6	5.7	6	100	0	68	32	17	50	0	1.47
38787304--38787362	31	1.9	31	89	0	91	38	6	15	38	1.74
38787319--38787595	120	2.3	120	90	1	430	44	13	8	33	1.74
38788144--38788194	22	2.3	22	75	18	61	33	0	1	64	1.05
38790251--38790276	2	13.0	2	100	0	52	50	0	0	50	1.00
38791638--38791675	17	2.2	18	86	9	53	52	0	7	39	1.31
38795025--38795077	18	2.6	22	72	27	62	60	3	0	35	1.15
38795024--38795070	18	2.6	18	93	0	76	59	4	0	36	1.17
38799508--38799561	23	2.5	22	76	11	58	64	1	1	31	1.14
38800074--38800104	13	2.5	12	90	10	53	35	0	0	64	0.94
38800068--38800102	18	1.9	18	88	11	54	34	0	0	65	0.93
38802898--38802993	30	3.2	31	73	15	103	37	6	27	29	1.81
38802898--38803347	58	7.7	58	86	2	557	36	3	27	32	1.73
38803001--38803203	29	7.0	28	69	16	137	36	1	27	34	1.66
38802898--38803351	174	2.6	173	86	4	617	37	3	27	32	1.73
38803493--38803702	98	2.1	98	84	1	260	45	13	16	23	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38805210--38805314	6	18.0	6	70	13	67	49	1	2	45	1.27
38805213--38805279	35	1.9	35	84	6	91	50	2	1	44	1.26
38805231--38805340	41	2.6	42	80	5	125	51	3	2	41	1.33
38805270--38805314	17	2.6	18	85	3	65	53	0	4	42	1.21
38805246--38805338	24	3.7	24	74	21	75	53	2	3	40	1.29
38807693--38807742	13	3.8	13	82	10	66	38	18	6	38	1.75
38812499--38812557	31	2.0	30	83	6	75	54	6	3	35	1.44
38818789--38818850	30	2.1	30	90	0	97	56	16	3	24	1.55
38823059--38823133	25	2.9	26	69	18	66	8	14	1	76	1.08
38823085--38823132	14	3.4	14	80	13	53	8	12	2	77	1.08

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143