genome.fa.s11.2.7.7.80.10.50.1000.108.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032255.1 Gossypioides kirkii chromosome KI_13
Parameters: 2 7 7 80 10 50 1000
Length:  42971368

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   

This is table  108  of  143  ( 17057 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32977684--32977736	21	2.5	21	87	0	70	1	45	18	33	1.61
32977732--32977879	66	2.2	66	85	2	199	16	22	14	45	1.85
32983395--32983488	8	11.8	8	72	21	65	52	3	1	43	1.24
32983394--32983439	22	2.2	20	88	7	65	54	0	0	45	0.99
32983395--32983474	30	2.6	29	83	13	99	52	3	1	42	1.27
32983538--32983714	18	10.7	18	68	18	116	44	5	0	49	1.28
32983539--32983737	49	4.1	49	96	0	355	45	5	0	48	1.29
32983618--32983741	26	5.1	24	65	23	80	45	6	0	48	1.28
32986288--32986774	41	11.9	41	81	9	403	24	26	24	25	2.00
32986288--32986775	82	6.0	82	79	9	489	23	26	24	25	2.00
32989578--32989945	182	2.0	182	93	0	628	32	18	20	28	1.97
32990058--32990087	13	2.2	14	94	5	53	33	0	16	50	1.46
32990877--32990945	9	7.1	9	81	18	77	50	0	0	49	1.00
32990876--32990945	20	3.6	19	80	19	90	50	0	0	50	1.00
32991494--32991565	27	2.6	28	80	4	83	47	34	2	15	1.60
32991879--32992005	61	2.1	61	98	0	245	33	17	15	33	1.92
32991899--32992025	61	2.1	61	85	2	166	33	19	14	33	1.92
33007751--33007781	2	15.5	2	100	0	62	51	0	0	48	1.00
33030068--33030190	61	2.0	61	96	0	228	21	20	26	30	1.98
33031394--33031678	124	2.3	124	92	0	462	38	19	20	21	1.93
33031596--33031762	85	2.0	84	85	1	226	37	17	20	23	1.94
33031473--33031874	209	1.9	206	86	2	572	37	17	22	22	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33033109--33033138	10	2.8	11	95	5	53	30	0	36	33	1.58
33037909--33037990	28	2.9	28	87	3	110	54	1	0	43	1.07
33038518--33038634	30	4.0	30	76	8	107	49	32	0	17	1.52
33041727--33041781	27	2.0	27	89	0	83	40	0	5	54	1.23
33041745--33041821	6	13.2	6	79	15	90	42	1	0	55	1.07
33041745--33041818	17	4.6	17	85	11	102	41	1	0	56	1.07
33041735--33041812	11	7.9	10	72	25	60	41	1	1	56	1.15
33041804--33041863	31	1.9	31	87	12	88	61	5	0	33	1.17
33042628--33042657	14	2.1	14	93	0	51	70	0	0	30	0.88
33043615--33043911	30	10.0	29	88	5	400	36	24	3	35	1.74
33043892--33044088	59	3.4	58	70	8	175	28	28	4	38	1.77
33043892--33044110	59	3.8	58	68	13	148	30	28	4	37	1.76
33055826--33056716	68	12.9	68	92	2	1406	34	16	20	28	1.94
33056493--33056671	31	5.4	31	71	15	133	36	16	20	26	1.94
33057051--33057105	27	2.0	27	89	0	83	40	0	5	54	1.23
33057069--33057145	6	13.2	6	77	15	81	41	1	1	55	1.16
33057069--33057142	17	4.6	17	85	11	93	40	1	1	56	1.16
33057059--33057136	11	7.9	10	71	25	51	39	1	2	56	1.21
33057950--33057979	14	2.1	14	93	0	51	70	0	0	30	0.88
33058957--33059280	30	10.9	30	88	1	429	37	23	3	35	1.72
33058957--33059475	30	17.7	28	75	14	196	34	26	3	36	1.73
33060926--33061003	28	2.7	28	90	4	111	51	1	0	47	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33060929--33061014	28	3.0	28	84	6	102	51	1	0	47	1.08
33061550--33061666	30	4.0	30	74	8	98	48	33	0	17	1.53
33068181--33068287	11	10.6	11	72	20	76	48	0	1	49	1.12
33068189--33068281	37	2.4	39	91	7	145	48	0	1	50	1.07
33068881--33068930	23	2.1	24	88	3	75	50	30	2	18	1.58
33069825--33069916	47	2.0	47	86	0	130	44	11	15	28	1.81
33078258--33078289	5	6.4	5	100	0	64	0	37	0	62	0.95
33087381--33087410	14	2.2	13	94	5	51	0	26	6	66	1.16
33088354--33088623	135	2.0	132	86	2	378	28	22	18	30	1.97
33095025--33095077	20	2.5	21	81	6	63	35	5	0	58	1.22
33095030--33095077	21	2.3	22	82	17	66	33	4	0	62	1.14
33095025--33095078	21	2.7	20	85	8	65	35	5	0	59	1.21
33095094--33095135	20	2.1	19	86	8	57	30	7	0	61	1.22
33095148--33095231	17	4.8	17	71	17	57	36	8	1	53	1.39
33097643--33097685	22	1.9	22	81	13	52	18	27	2	51	1.59
33099698--33099760	27	2.4	27	91	2	101	49	0	1	49	1.10
33101142--33101180	14	2.6	14	84	11	51	76	2	17	2	1.01
33108724--33108763	21	1.9	21	85	10	55	32	0	0	67	0.91
33115639--33115697	20	3.0	19	77	5	64	64	0	1	33	1.04
33115647--33115715	20	3.6	18	75	11	57	57	0	1	40	1.07
33115978--33116032	24	2.3	23	84	3	65	38	12	10	38	1.79
33115995--33116040	24	1.9	24	86	0	65	41	15	13	30	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33116840--33116873	17	2.0	17	88	11	52	50	0	0	50	1.00
33116953--33117075	12	10.1	12	66	20	51	47	0	3	48	1.23
33116953--33117027	25	3.1	25	69	19	59	48	1	4	46	1.29
33130354--33130421	31	2.3	30	82	5	84	27	1	17	52	1.53
33138226--33138268	11	3.6	11	80	17	50	69	0	0	30	0.88
33138226--33138266	14	3.2	13	83	12	50	73	0	0	26	0.84
33138475--33138514	21	2.0	20	85	5	53	70	2	0	27	1.01
33138516--33138576	19	3.2	18	72	25	54	29	3	3	63	1.26
33138506--33138612	38	2.8	39	72	12	105	32	3	2	60	1.29
33138591--33138709	9	12.4	10	70	15	65	31	3	0	64	1.10
33138733--33138928	87	2.3	83	81	6	216	47	6	6	39	1.55
33140176--33140204	2	14.5	2	100	0	58	0	0	48	51	1.00
33142331--33142441	41	2.7	42	82	14	142	44	1	0	53	1.17
33145692--33145885	90	2.1	91	81	2	221	44	11	18	25	1.82
33145747--33145885	31	4.5	31	73	10	115	46	9	17	27	1.78
33149042--33149085	23	1.9	22	82	17	54	36	0	13	50	1.42
33152973--33153032	28	2.1	28	81	0	66	43	8	6	41	1.61
33153260--33153314	13	4.3	13	71	11	51	34	0	0	65	0.93
33153531--33153582	18	2.9	18	94	0	86	44	0	0	55	0.99
33153756--33153818	11	6.0	11	72	22	55	39	1	0	58	1.07
33154206--33154273	25	2.5	28	75	18	72	48	1	2	47	1.26
33154481--33154634	73	2.1	73	96	2	283	38	16	5	39	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33156861--33157485	30	20.9	30	85	1	754	35	4	25	35	1.76
33159513--33159591	6	13.2	6	79	15	83	49	0	2	48	1.14
33159529--33159599	17	4.4	16	81	12	83	53	1	2	42	1.24
33159529--33159607	17	4.9	16	81	10	54	51	3	2	41	1.33
33159944--33160694	137	5.5	137	94	0	1200	29	20	16	34	1.94
33159887--33160694	206	3.9	206	89	2	1138	29	20	16	34	1.94
33159944--33160694	69	10.9	69	91	1	1134	29	20	16	34	1.94
33167629--33167908	139	2.0	139	100	0	560	24	20	22	32	1.97
33172704--33173036	30	11.1	30	85	2	402	35	4	24	35	1.75
33175084--33175162	6	13.2	6	77	15	74	49	1	2	46	1.23
33175100--33175160	17	3.8	16	80	12	63	54	1	3	40	1.27
33175100--33175178	17	4.9	16	78	10	54	51	5	2	40	1.37
33179871--33179902	15	2.1	15	94	0	55	28	12	28	31	1.93
33182368--33182477	51	2.2	51	88	6	161	32	20	5	41	1.75
33187412--33187499	44	2.0	44	91	4	142	38	3	23	34	1.72
33187407--33187488	21	3.8	21	73	6	65	37	3	25	32	1.74
33189729--33189760	15	2.1	15	94	0	55	28	12	28	31	1.93
33192057--33192166	51	2.2	51	86	6	152	31	20	6	41	1.77
33193506--33193531	11	2.4	11	100	0	52	15	0	38	46	1.46
33195658--33195725	28	2.4	29	85	9	88	33	20	19	26	1.96
33195660--33195729	14	5.0	14	74	6	61	32	21	21	24	1.98
33197303--33197346	15	2.8	16	75	6	54	40	6	6	45	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33202122--33202183	31	2.0	31	100	0	124	35	9	19	35	1.85
33209585--33209685	51	2.0	50	88	1	148	28	7	2	60	1.40
33212393--33212428	17	2.2	17	95	5	65	38	13	11	36	1.81
33212398--33212436	16	2.4	17	86	4	53	35	17	7	38	1.79
33219066--33219102	17	2.1	18	85	14	51	56	0	2	40	1.13
33223750--33223860	40	2.8	40	86	4	152	16	23	21	38	1.92
33224631--33224800	20	7.9	21	68	22	77	68	19	3	8	1.31
33224685--33224736	12	4.3	12	80	7	61	71	19	3	5	1.22
33224631--33224736	34	3.1	33	77	14	101	67	20	2	8	1.30
33224697--33224809	23	5.2	23	77	12	96	70	16	4	7	1.28

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143