genome.fa.s11.2.7.7.80.10.50.1000.95.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032255.1 Gossypioides kirkii chromosome KI_13
Parameters: 2 7 7 80 10 50 1000
Length:  42971368

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   

This is table  95  of  143  ( 17057 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29444323--29444390	17	4.0	17	77	7	75	48	13	17	20	1.80
29444322--29444388	34	2.0	34	84	0	89	49	11	17	20	1.79
29452833--29452929	26	3.7	26	79	5	88	27	20	23	27	1.99
29462266--29462329	17	3.8	17	74	15	60	53	21	12	12	1.71
29469356--29469393	18	2.1	18	90	0	58	57	13	13	15	1.65
29480969--29481011	18	2.4	18	84	0	59	18	16	23	41	1.89
29494494--29494540	16	3.0	16	78	9	53	76	0	23	0	0.78
29500791--29501190	198	2.0	198	98	0	773	35	22	12	30	1.91
29503718--29503771	21	2.6	20	82	11	65	27	25	12	33	1.93
29542394--29542428	12	2.9	12	91	0	61	48	2	40	8	1.49
29555021--29555076	15	3.9	14	72	11	51	71	0	1	26	0.96
29555053--29555077	5	5.0	5	100	0	50	80	0	0	20	0.72
29556110--29556156	22	2.1	23	88	4	69	61	12	8	17	1.55
29557423--29557553	29	4.5	29	87	0	172	44	11	15	29	1.81
29577097--29577130	17	2.1	17	88	5	52	35	0	14	50	1.44
29580702--29580856	29	5.3	29	83	4	170	32	1	25	39	1.67
29580702--29580853	58	2.6	58	89	2	216	32	1	25	40	1.67
29587192--29587227	18	2.0	18	100	0	72	11	27	33	27	1.91
29593809--29594002	58	3.3	59	76	11	229	38	6	21	34	1.79
29593806--29594031	116	1.9	116	92	1	382	39	6	20	32	1.79
29593845--29594023	58	3.1	57	75	9	200	39	6	21	32	1.79
29594044--29594232	58	3.2	59	78	9	174	36	5	21	36	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29594044--29594207	29	5.6	30	79	12	153	36	4	21	37	1.73
29594063--29594232	29	5.8	29	80	8	157	38	5	20	35	1.75
29594614--29594639	5	5.2	5	100	0	52	0	19	61	19	1.35
29595385--29595414	15	2.0	15	93	0	51	40	10	0	50	1.36
29596278--29596320	17	2.5	17	92	0	68	58	2	2	37	1.24
29596300--29596330	11	2.9	11	95	4	55	61	0	0	38	0.96
29603459--29603506	23	2.1	23	92	0	78	62	12	8	16	1.53
29604763--29604882	29	4.1	29	80	8	97	46	10	13	29	1.77
29604773--29604882	58	1.9	58	84	0	148	45	10	13	30	1.78
29620282--29620334	24	2.3	23	84	12	72	52	9	13	24	1.69
29621995--29622043	24	2.0	24	81	14	57	10	46	0	42	1.37
29624306--29624339	17	2.1	17	88	5	52	35	0	14	50	1.44
29624433--29624485	21	2.5	21	93	0	88	22	15	28	33	1.94
29631020--29631104	42	2.1	42	91	4	138	28	30	16	24	1.96
29634770--29635021	123	2.0	123	83	3	319	19	29	20	30	1.97
29634787--29635052	41	6.5	41	79	1	230	20	29	20	29	1.98
29634770--29635058	123	2.4	122	80	5	287	20	28	19	31	1.97
29635032--29635108	40	1.9	40	89	2	118	23	20	16	38	1.92
29638893--29638931	16	2.3	18	86	8	55	15	0	10	74	1.07
29645490--29645523	16	2.1	16	88	5	50	61	11	11	14	1.56
29647905--29647990	38	2.3	38	81	2	120	30	9	26	33	1.88
29647973--29648043	37	1.9	37	91	0	115	23	16	29	29	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29650675--29650709	16	2.2	16	90	10	54	22	5	17	54	1.64
29664348--29664379	8	4.0	8	100	0	64	25	0	0	75	0.81
29671150--29671317	85	2.0	85	84	4	223	23	22	17	37	1.94
29671144--29671874	209	3.5	209	88	3	1096	23	21	17	37	1.94
29671359--29671526	85	2.0	85	82	2	203	23	22	17	36	1.94
29672297--29672325	13	2.1	14	93	6	51	68	3	6	20	1.27
29683789--29683814	2	13.0	2	100	0	52	50	0	0	50	1.00
29697729--29698034	30	10.3	30	76	11	249	38	3	23	34	1.73
29699838--29699884	17	2.7	17	84	15	69	53	0	4	42	1.20
29699838--29699883	18	2.6	18	90	10	69	52	0	4	43	1.21
29699961--29700169	101	2.1	101	94	0	364	24	26	18	29	1.98
29700485--29700967	39	12.4	38	73	12	340	26	19	30	23	1.98
29700465--29700928	117	4.0	117	78	3	454	25	19	30	23	1.98
29700707--29701006	78	3.8	76	80	6	298	25	19	30	24	1.98
29701008--29701172	41	4.0	41	86	0	222	29	16	20	34	1.94
29701456--29702101	49	13.1	50	77	4	526	17	30	17	34	1.93
29701446--29702101	99	6.6	99	77	4	520	17	31	17	34	1.93
29701456--29702090	247	2.6	246	80	5	681	17	31	17	33	1.93
29703048--29703120	7	10.6	7	77	14	62	4	17	0	78	0.91
29703090--29703134	18	2.5	18	88	0	63	4	13	0	82	0.82
29703048--29703134	25	3.3	24	79	14	75	5	16	0	78	0.94
29703961--29703991	15	2.0	16	93	6	55	0	19	3	77	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29704045--29704070	9	2.9	9	100	0	52	0	7	0	92	0.39
29707958--29708058	28	3.5	28	84	5	121	34	0	24	39	1.62
29707975--29708140	30	5.6	30	81	2	158	37	3	22	36	1.70
29708025--29708157	30	4.4	30	80	5	117	36	3	21	38	1.71
29708617--29708645	10	2.9	10	100	0	58	17	20	0	62	1.33
29709958--29709990	6	5.7	6	89	7	50	54	3	0	42	1.15
29709939--29709990	12	4.5	11	80	9	50	51	1	1	44	1.23
29718294--29718327	13	2.6	13	100	0	68	23	17	35	23	1.95
29720158--29720196	20	1.9	19	85	10	51	33	15	0	51	1.44
29720278--29720330	27	2.0	28	88	7	83	39	0	0	60	0.97
29721495--29721540	24	2.0	23	91	4	74	39	0	0	60	0.97
29721527--29721604	30	2.6	30	100	0	156	43	0	0	56	0.99
29721505--29721584	30	3.0	25	75	20	74	42	0	0	57	0.98
29724563--29724642	2	40.5	2	77	7	83	43	0	5	51	1.23
29725146--29725183	19	2.0	19	89	0	58	50	0	2	47	1.15
29726068--29726249	99	1.8	99	96	0	337	42	5	9	41	1.61
29726631--29726685	28	2.0	27	82	3	65	27	7	3	61	1.39
29732693--29732755	29	2.1	30	85	8	85	15	23	1	58	1.46
29733623--29733650	3	9.3	3	100	0	56	67	0	32	0	0.91
29736448--29736488	16	2.3	18	84	12	50	26	0	4	68	1.10
29737645--29737701	30	1.9	30	88	0	87	24	26	24	24	2.00
29745307--29745363	22	2.6	22	83	8	71	43	26	19	10	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29746800--29746843	11	3.9	11	77	16	54	61	4	0	34	1.16
29753050--29753446	40	10.1	40	79	7	420	22	18	26	32	1.97
29753063--29753426	194	1.9	192	86	4	518	22	17	27	32	1.96
29758038--29758091	20	2.7	20	88	0	72	29	33	11	25	1.91
29760942--29761007	33	2.0	33	85	5	89	34	6	22	36	1.79
29761153--29761190	20	1.9	20	94	0	67	31	34	7	26	1.85
29765509--29765534	10	2.6	10	100	0	52	92	0	0	7	0.39
29766473--29766529	28	2.0	28	100	0	114	24	17	7	50	1.70
29767833--29767878	23	2.0	23	91	0	74	15	6	13	65	1.46
29769246--29769291	21	2.2	21	88	3	67	71	17	10	0	1.13
29781772--29781939	85	2.0	85	82	4	205	35	16	23	25	1.94
29781630--29782156	211	2.5	211	87	4	778	37	17	21	22	1.94
29781982--29782138	85	1.8	85	86	2	226	38	15	22	22	1.92
29790595--29790640	15	3.0	15	84	6	65	54	2	2	41	1.25
29791791--29792009	30	7.3	29	79	7	224	38	26	2	31	1.71
29791790--29792169	29	13.2	29	73	12	214	36	26	3	33	1.73
29791791--29792186	59	6.9	59	73	13	249	35	26	3	34	1.74
29791977--29792018	21	2.1	20	91	8	68	35	33	0	30	1.58
29791918--29792163	86	3.0	80	79	10	261	34	27	3	34	1.73
29791888--29792190	108	2.7	110	77	9	260	34	27	2	34	1.72
29792001--29792190	86	2.2	87	81	10	221	33	26	4	35	1.76
29792102--29792186	29	2.9	29	76	16	93	31	29	4	34	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29792234--29792492	144	1.8	143	88	4	405	30	24	10	34	1.88
29800726--29800849	51	2.5	52	85	5	175	38	22	12	25	1.90
29800757--29800858	52	2.0	52	86	0	141	39	21	11	27	1.88
29806070--29806128	29	2.0	28	81	15	66	30	8	13	47	1.73
29807707--29807764	30	1.9	30	85	0	80	44	8	10	36	1.69
29807707--29807771	30	2.1	30	82	2	76	47	9	10	32	1.70
29810752--29810824	34	2.1	34	100	0	146	32	17	17	31	1.94
29811649--29811721	22	3.3	22	76	0	74	35	21	16	26	1.94
29811649--29811742	44	2.1	44	86	3	127	37	20	14	27	1.92
29811649--29811761	44	2.6	44	83	5	122	37	21	15	26	1.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143