genome.fa.s11.2.7.7.80.10.50.1000.137.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032255.1 Gossypioides kirkii chromosome KI_13
Parameters: 2 7 7 80 10 50 1000
Length:  42971368

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   

This is table  137  of  143  ( 17057 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40743049--40743089	19	2.2	19	86	8	57	65	2	0	31	1.05
40744099--40744398	30	10.0	30	91	1	476	36	24	4	35	1.74
40744251--40744305	15	3.3	19	63	36	54	40	27	3	29	1.73
40751934--40752117	29	6.3	29	77	12	146	29	6	28	34	1.82
40752007--40752299	29	10.0	29	75	13	188	36	4	23	34	1.76
40751950--40752301	59	6.0	58	79	8	295	34	5	25	34	1.79
40752008--40752335	118	2.8	119	79	9	316	36	5	23	34	1.77
40752008--40752342	30	11.3	30	74	13	196	36	5	23	34	1.78
40753132--40753170	20	1.9	21	89	5	62	28	17	5	48	1.68
40753475--40753537	3	20.0	3	75	15	56	34	0	1	63	1.04
40753479--40753546	15	4.4	15	78	12	75	35	1	1	61	1.14
40754193--40754270	17	4.6	17	83	0	102	58	2	2	35	1.25
40756555--40756691	57	2.4	57	85	4	170	36	8	24	30	1.84
40756612--40756864	58	4.3	56	77	11	172	35	3	24	36	1.71
40756704--40756866	29	5.6	29	73	12	145	37	1	22	38	1.62
40756674--40756864	59	3.2	58	82	10	217	38	1	21	38	1.64
40756712--40756866	30	5.3	28	74	16	136	36	1	22	40	1.63
40758298--40758353	23	2.4	24	76	8	62	42	14	5	37	1.68
40759342--40759376	16	2.1	16	94	5	61	17	22	17	42	1.88
40760199--40760353	29	5.3	29	68	20	106	32	30	1	34	1.69
40760186--40760382	59	3.4	58	85	4	272	34	29	2	32	1.71
40760186--40760377	30	6.6	29	68	21	100	35	28	2	33	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40770261--40770285	2	12.5	2	100	0	50	52	0	0	48	1.00
40771328--40771415	17	4.9	17	82	10	104	44	1	1	53	1.15
40771333--40771399	6	11.0	6	75	15	66	44	1	1	52	1.19
40773351--40773598	30	8.4	30	79	8	240	37	18	3	40	1.67
40773343--40773590	90	2.8	89	88	3	340	37	19	3	39	1.68
40773579--40773618	20	2.0	20	90	0	62	42	27	0	30	1.56
40773609--40773715	29	3.6	30	72	20	100	33	23	0	42	1.61
40773614--40773781	59	2.8	61	80	11	188	33	23	1	41	1.65
40773609--40773721	30	3.8	29	71	17	90	33	23	0	41	1.61
40773614--40773781	60	2.8	58	81	7	187	33	23	1	41	1.65
40774033--40774218	95	1.9	96	81	5	225	31	18	12	37	1.89
40774907--40774965	17	3.5	17	71	17	59	37	1	38	22	1.64
40774908--40774977	34	2.1	34	88	0	104	38	2	38	20	1.67
40781622--40781679	29	2.0	29	93	0	98	37	3	24	34	1.72
40781629--40781830	30	6.7	30	78	5	169	31	5	26	36	1.80
40781632--40781849	60	3.7	58	78	9	208	32	6	24	36	1.81
40781632--40781849	90	2.4	88	80	8	244	32	6	24	36	1.81
40785918--40786088	30	5.8	30	82	4	107	30	7	25	36	1.84
40785914--40786088	60	3.0	58	79	7	165	31	7	25	36	1.83
40785903--40786073	90	1.9	89	81	3	209	33	7	23	35	1.82
40790636--40790692	28	2.0	28	100	0	114	47	10	14	28	1.76
40790838--40790922	38	2.2	38	84	12	104	31	1	7	60	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40790898--40790944	23	2.1	23	88	4	69	29	0	4	65	1.11
40793009--40793050	14	3.0	14	83	13	59	2	23	0	73	0.94
40795569--40795798	110	2.1	111	95	1	408	34	17	7	40	1.78
40796616--40796661	24	1.9	24	82	8	58	30	15	17	36	1.91
40798770--40798802	15	2.1	17	88	11	52	69	3	0	27	1.03
40799758--40799917	10	16.8	9	66	18	74	60	2	3	33	1.28
40799916--40799953	20	2.0	20	89	5	60	50	2	2	44	1.30
40807768--40807797	3	10.3	3	92	7	53	70	0	0	30	0.88
40810185--40810673	59	8.3	59	88	1	689	34	5	28	30	1.81
40810191--40810673	117	4.1	119	88	2	683	35	5	28	30	1.81
40810191--40810673	176	2.7	176	88	2	720	35	5	28	30	1.81
40810224--40810657	29	14.8	28	66	18	190	35	6	28	29	1.82
40810224--40810665	30	15.1	29	66	16	205	35	6	28	29	1.81
40810521--40810702	30	6.2	29	68	16	106	35	4	26	32	1.77
40810796--40811113	161	2.0	163	91	3	518	46	12	14	25	1.81
40810847--40811197	161	2.2	160	82	6	415	49	12	14	22	1.77
40811891--40811937	10	4.8	10	86	5	69	40	2	0	57	1.11
40812373--40812411	20	2.0	20	89	0	60	17	17	48	15	1.81
40812457--40812482	12	2.2	12	100	0	52	19	23	23	34	1.96
40812457--40812506	14	3.8	13	84	5	57	22	20	26	32	1.98
40812529--40812624	6	16.0	6	75	18	85	48	1	1	48	1.15
40812554--40812615	25	2.6	23	85	9	88	51	1	1	45	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40812553--40812634	31	2.8	31	85	10	102	52	2	1	43	1.22
40812554--40812624	17	4.4	17	77	16	80	53	1	1	43	1.18
40816183--40816268	43	2.0	43	88	4	129	36	9	24	30	1.87
40816614--40816682	27	2.5	28	81	6	79	23	43	17	15	1.87
40819547--40819677	29	4.5	29	78	12	144	37	2	25	34	1.69
40819575--40819913	59	5.8	57	80	9	208	40	1	21	36	1.61
40819575--40819704	29	4.4	30	75	14	103	39	1	24	34	1.65
40819575--40819935	30	12.2	29	74	10	225	40	1	21	36	1.62
40819717--40819943	30	7.7	29	79	6	231	40	1	19	39	1.60
40819723--40819943	60	3.7	59	90	5	338	40	1	18	39	1.59
40819723--40819943	119	1.9	119	91	1	363	40	1	18	39	1.59
40822491--40823235	50	14.9	49	68	13	365	13	25	21	39	1.90
40822460--40823240	101	7.8	101	89	1	1110	13	25	21	39	1.90
40832791--40832923	59	2.3	58	84	5	169	38	2	26	33	1.69
40832821--40833224	30	13.8	29	74	12	197	39	2	22	35	1.66
40832873--40833214	58	5.8	57	80	11	325	40	2	21	35	1.66
40833947--40833981	15	2.3	15	95	0	61	45	20	17	17	1.85
40835012--40835041	15	2.0	15	93	0	51	53	3	0	43	1.17
40835006--40835070	17	3.9	17	80	8	80	56	1	1	40	1.18
40839020--40839201	91	2.0	91	91	0	292	47	26	3	22	1.67
40840150--40840436	144	2.0	144	93	1	495	34	10	11	43	1.75
40841149--40841197	3	16.3	3	100	0	98	65	0	0	34	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40843302--40843558	59	4.4	59	87	5	335	35	3	29	31	1.73
40843531--40843735	30	6.9	30	93	1	333	34	4	25	35	1.77
40843812--40844152	161	2.1	161	84	2	425	44	12	15	27	1.82
40844759--40844789	16	2.0	15	93	6	53	32	25	29	12	1.93
40845738--40845816	6	13.2	6	79	15	92	50	0	2	46	1.14
40845748--40845809	11	5.7	11	75	21	51	54	0	3	41	1.16
40845738--40845824	17	5.3	17	80	13	85	50	1	2	45	1.21
40845751--40845810	31	1.9	31	93	6	104	53	0	3	43	1.17
40845748--40845821	37	2.0	37	84	12	98	52	1	2	43	1.23
40846176--40846749	31	16.5	37	63	19	105	29	19	16	33	1.94
40846169--40846404	69	3.4	69	91	1	373	28	19	16	34	1.94
40846283--40846702	100	4.1	100	76	14	471	29	20	16	34	1.94
40846210--40846564	169	2.1	169	92	0	595	29	20	16	34	1.94
40846383--40846816	69	6.3	69	93	0	742	29	20	16	33	1.94
40846163--40846633	238	2.0	238	91	0	764	28	20	16	34	1.94
40846210--40846608	169	2.3	168	87	4	516	29	20	16	33	1.94
40846169--40846746	307	1.9	306	90	3	908	29	20	16	33	1.94
40858942--40859151	30	7.1	29	67	18	121	37	3	27	31	1.73
40858935--40859160	59	3.8	59	88	5	332	35	3	29	30	1.76
40858935--40859192	118	2.2	118	87	4	362	34	3	29	31	1.75
40858937--40859193	59	4.4	58	82	7	261	35	3	29	31	1.73
40859157--40859368	59	3.6	58	84	9	250	34	2	24	38	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40859166--40859368	30	6.8	30	90	2	286	34	2	24	37	1.71
40859488--40859782	159	1.9	160	86	0	430	45	11	16	26	1.81
40860372--40860402	16	2.0	15	93	6	53	32	25	29	12	1.93
40861357--40861435	6	13.2	6	79	15	83	49	0	2	48	1.14
40861373--40861443	17	4.4	16	81	12	83	53	1	2	42	1.24
40864856--40864883	3	9.3	3	100	0	56	64	0	0	35	0.94
40867558--40867602	14	3.4	14	77	17	51	15	6	0	77	0.96
40868582--40868609	3	9.3	3	100	0	56	67	0	0	32	0.91
40878215--40878318	6	18.0	6	71	18	69	40	1	2	54	1.26
40878239--40878318	17	5.0	16	85	11	110	41	2	1	55	1.21

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143