genome.fa.s11.2.7.7.80.10.50.1000.43.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032255.1 Gossypioides kirkii chromosome KI_13
Parameters: 2 7 7 80 10 50 1000
Length:  42971368

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   

This is table  43  of  143  ( 17057 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13495843--13495969	43	3.0	42	80	4	137	58	9	7	25	1.55
13497726--13497908	78	2.3	78	82	3	215	20	29	21	28	1.98
13497724--13497986	39	6.8	38	69	17	157	20	31	22	26	1.98
13497850--13498038	78	2.4	78	81	6	197	23	32	20	23	1.98
13497763--13497994	117	2.0	117	86	3	324	21	31	20	26	1.98
13498443--13498527	17	5.1	17	80	11	95	42	2	2	52	1.27
13498512--13498543	12	2.7	12	95	0	55	53	0	3	43	1.16
13499225--13499266	13	3.2	13	80	6	50	64	0	0	35	0.94
13500243--13500526	30	9.8	29	85	4	342	35	25	1	36	1.67
13500247--13500526	59	4.8	57	85	4	339	35	26	1	36	1.67
13504760--13504890	46	2.8	46	84	2	183	13	22	22	41	1.89
13504760--13504992	23	10.3	23	73	14	164	12	21	21	43	1.86
13504909--13504987	39	2.0	39	87	0	113	12	18	21	46	1.82
13504948--13505027	23	3.4	23	77	13	90	13	21	17	47	1.82
13507828--13508455	312	2.0	312	96	0	1166	36	12	15	35	1.86
13508472--13508597	43	2.9	41	80	6	126	54	8	10	26	1.63
13511450--13511572	43	2.9	43	80	0	138	52	9	10	26	1.67
13511935--13511973	20	1.9	21	84	5	53	41	28	0	30	1.57
13511975--13512014	21	2.0	20	90	5	62	40	32	2	25	1.69
13514418--13514486	22	3.2	22	64	15	54	56	8	4	30	1.49
13514397--13514519	43	2.9	43	82	0	156	53	8	10	27	1.63
13514928--13514967	21	2.0	21	90	5	64	40	32	2	25	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13515155--13515197	21	2.0	22	82	13	54	60	4	13	20	1.51
13519177--13519333	81	1.9	81	80	2	181	33	22	19	24	1.97
13525417--13525469	13	3.8	14	80	12	56	52	35	0	11	1.37
13525418--13525500	42	2.0	41	88	6	123	48	37	1	13	1.50
13528089--13528239	80	1.9	80	87	0	221	31	23	19	25	1.98
13530895--13530978	43	2.0	43	90	0	132	54	7	9	28	1.59
13531614--13531661	25	1.9	24	84	16	62	52	0	6	41	1.27
13535798--13535856	29	2.0	29	93	0	100	37	35	6	20	1.79
13536376--13536508	49	2.8	49	88	4	191	38	24	12	24	1.90
13538349--13538379	16	1.9	16	93	0	53	22	16	0	61	1.34
13542487--13542539	20	2.6	21	82	8	65	75	3	9	11	1.16
13552567--13552591	10	2.5	10	100	0	50	0	8	0	92	0.40
13552569--13552614	17	2.7	18	80	10	60	2	15	0	82	0.76
13561474--13561503	14	2.2	14	94	5	53	36	10	23	30	1.87
13567291--13567317	6	4.5	6	100	0	54	0	44	0	55	0.99
13584092--13584153	3	20.7	3	74	12	56	1	32	0	66	1.02
13584095--13584153	18	3.3	17	84	15	75	1	32	0	66	1.02
13584092--13584148	21	2.8	20	82	15	71	0	31	0	68	0.90
13597599--13598012	43	9.7	42	84	4	488	27	28	20	22	1.99
13597599--13598028	129	3.4	127	85	5	546	28	28	20	23	1.99
13597599--13598028	86	5.0	85	85	2	549	28	28	20	23	1.99
13603840--13603875	8	4.5	8	89	0	54	63	2	0	33	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13604006--13604060	21	2.5	22	75	19	60	41	0	0	58	0.98
13604113--13604167	21	2.5	22	77	19	60	40	0	1	58	1.09
13604154--13604350	66	3.2	66	60	20	159	41	2	6	49	1.40
13603791--13604758	120	8.2	120	85	8	1332	40	1	5	51	1.37
13603886--13604758	228	3.8	228	86	9	1261	40	1	5	52	1.36
13603791--13604758	349	2.8	348	93	2	1629	40	1	5	51	1.37
13605039--13605129	31	2.9	31	98	0	173	45	2	36	16	1.60
13607024--13607113	41	2.2	41	84	4	110	22	24	15	37	1.93
13608294--13608326	17	1.9	17	93	0	57	39	0	21	39	1.53
13608562--13608821	41	6.3	41	75	5	209	25	20	24	28	1.99
13608562--13608818	86	3.1	83	77	9	220	26	21	24	28	1.99
13611839--13611872	15	2.4	14	90	5	50	0	20	0	79	0.73
13611839--13611883	23	2.0	23	86	8	65	2	20	0	77	0.87
13625283--13625362	33	2.4	33	80	0	97	30	17	23	28	1.97
13625283--13625377	33	2.9	32	75	6	91	29	18	21	30	1.97
13628486--13628613	43	3.0	43	79	4	141	57	9	7	25	1.57
13635136--13635183	17	2.8	17	77	0	60	52	14	16	16	1.76
13636683--13636726	18	2.5	17	82	10	52	9	15	27	47	1.76
13641634--13641976	40	8.6	40	88	0	488	29	19	24	26	1.99
13644119--13644213	43	2.2	43	84	0	118	52	9	9	28	1.65
13644147--13644229	43	1.9	43	90	4	132	50	10	9	28	1.69
13644556--13644614	13	4.3	13	78	19	59	44	42	1	11	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13644553--13644613	14	4.4	14	78	15	65	44	42	1	11	1.50
13644898--13644937	22	1.9	20	90	10	62	47	2	17	32	1.61
13646382--13646508	43	3.0	42	88	4	182	55	9	9	25	1.61
13646822--13646899	20	3.8	20	71	20	63	44	34	1	19	1.59
13650009--13650134	43	2.9	43	84	4	173	57	7	7	26	1.55
13650434--13650521	42	2.2	40	81	4	95	48	34	3	13	1.59
13652214--13652264	24	2.1	24	92	0	84	25	9	5	58	1.52
13652214--13652277	24	2.7	24	87	0	74	28	10	7	53	1.64
13655584--13655658	24	3.1	24	92	0	123	22	10	8	58	1.57
13657009--13657082	24	3.1	24	92	3	123	22	12	8	56	1.61
13657920--13658003	43	2.0	42	85	2	114	59	7	10	22	1.55
13683744--13683782	19	1.9	19	85	10	51	53	15	2	28	1.55
13684415--13684486	16	4.5	16	92	0	126	37	5	30	26	1.79
13684468--13684561	44	2.1	46	84	7	122	30	4	26	38	1.76
13684655--13684800	58	2.5	55	81	13	168	50	1	2	45	1.24
13687944--13688022	31	2.6	31	84	7	92	53	7	1	37	1.38
13690478--13690510	2	16.5	2	100	0	66	51	0	0	48	1.00
13692364--13692399	7	5.0	7	86	6	54	72	0	0	27	0.85
13692366--13692408	22	2.0	22	85	0	59	67	2	2	27	1.15
13694608--13694664	29	1.9	30	85	7	80	35	8	1	54	1.42
13695589--13695653	29	2.3	28	86	7	87	21	6	10	61	1.50
13696440--13696468	12	2.3	13	94	5	51	58	0	34	6	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13697544--13697578	17	2.1	17	94	0	61	37	0	0	62	0.95
13699113--13699152	18	2.1	18	86	9	53	45	20	5	30	1.72
13700667--13700719	22	2.4	21	76	20	54	32	0	1	66	1.03
13701225--13701265	20	2.0	20	90	0	64	39	4	9	46	1.58
13702790--13702830	21	1.9	22	85	5	57	26	7	7	58	1.51
13703519--13703566	20	2.5	18	80	12	51	33	4	14	47	1.63
13705409--13705459	17	2.8	18	80	13	59	1	21	0	76	0.88
13722905--13722942	20	1.9	20	84	10	51	71	2	21	5	1.19
13730899--13731673	50	15.5	49	79	5	621	36	17	22	23	1.95
13730877--13731673	150	5.3	150	80	2	778	36	17	22	23	1.94
13748709--13748753	12	3.8	11	83	13	54	77	0	20	2	0.87
13760748--13760831	42	2.0	41	86	2	114	47	7	13	32	1.69
13764801--13764865	33	2.0	33	82	8	80	53	3	9	33	1.48
13764971--13765061	9	9.9	9	70	12	51	68	1	3	27	1.12
13764973--13765060	37	2.4	36	75	7	88	69	1	3	26	1.11
13765954--13766029	32	2.5	30	79	10	82	22	1	27	48	1.58
13765986--13766046	24	2.6	24	87	7	81	21	1	22	54	1.54
13767013--13767151	56	2.5	57	92	1	235	35	5	12	47	1.63
13767791--13767883	21	4.8	19	68	16	66	16	3	54	25	1.56
13767780--13767884	39	2.7	38	80	5	129	17	2	54	25	1.57
13767847--13768118	63	4.3	64	88	3	376	18	3	50	26	1.63
13768207--13768265	3	19.7	3	96	0	109	32	0	35	32	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13770016--13770061	24	1.9	24	95	0	83	26	13	4	56	1.55
13770420--13770610	36	5.4	36	91	3	300	34	10	10	43	1.74
13770427--13770610	72	2.6	72	94	3	331	35	10	10	42	1.75
13771525--13771924	160	2.5	161	87	4	558	36	18	13	32	1.89
13772195--13772224	9	3.3	9	95	0	51	36	0	23	40	1.55
13773733--13773781	22	2.2	22	96	0	89	61	20	4	14	1.49
13774124--13774152	15	1.9	15	100	0	58	51	0	41	6	1.28
13774228--13774268	19	2.1	20	86	4	57	17	2	4	75	1.08
13777906--13777990	16	5.2	16	71	7	55	31	24	16	27	1.96
13792275--13792326	24	2.2	24	83	10	63	51	26	0	21	1.47

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143