genome.fa.s11.2.7.7.80.10.50.1000.124.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032255.1 Gossypioides kirkii chromosome KI_13
Parameters: 2 7 7 80 10 50 1000
Length:  42971368

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   

This is table  124  of  143  ( 17057 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36746056--36746480	59	7.2	59	86	1	559	33	27	4	34	1.76
36749904--36750122	111	2.0	106	86	6	307	26	9	21	43	1.82
36751465--36751502	2	18.5	2	94	5	67	50	2	0	47	1.15
36752697--36752765	31	2.3	30	82	7	86	44	2	5	46	1.42
36756431--36756530	28	3.5	28	80	5	110	33	4	28	35	1.76
36756459--36756567	29	3.8	30	77	6	109	36	3	24	34	1.73
36756459--36756675	58	3.7	58	80	4	222	36	4	24	34	1.76
36756459--36756630	28	5.9	29	74	11	120	36	4	25	33	1.77
36756460--36756675	30	7.4	28	75	13	125	36	4	24	34	1.76
36756488--36756675	30	6.4	29	74	14	136	37	4	22	35	1.76
36757785--36757810	12	2.2	12	100	0	52	50	0	0	50	1.00
36758463--36758497	13	2.6	14	90	4	54	22	11	22	42	1.85
36758531--36758602	23	3.2	23	80	11	87	56	5	0	37	1.22
36758560--36758602	17	2.5	17	88	0	59	60	4	0	34	1.17
36758530--36758588	28	2.1	28	84	6	75	55	5	0	38	1.22
36758531--36758592	6	10.8	6	76	10	58	56	4	0	38	1.21
36758531--36758602	11	6.3	12	76	6	53	56	5	0	37	1.22
36758839--36758938	28	3.5	28	90	4	130	32	6	24	38	1.79
36758839--36758927	28	3.1	28	91	1	133	32	6	25	34	1.82
36758890--36759260	59	6.4	58	77	10	280	38	2	23	36	1.68
36758839--36759030	28	6.7	27	82	11	127	33	3	26	36	1.74
36758925--36759274	30	11.9	30	79	11	307	38	2	22	36	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36759853--36759899	19	2.5	19	86	3	60	36	0	0	63	0.94
36759873--36760118	121	2.0	121	91	0	395	41	4	9	43	1.58
36760682--36760775	6	16.3	6	69	16	65	54	2	2	41	1.24
36760682--36760775	17	5.5	17	83	6	118	54	2	2	41	1.24
36760703--36760757	11	4.8	12	80	6	51	56	1	1	40	1.21
36761064--36761139	6	13.0	6	74	20	72	42	2	1	53	1.23
36761064--36761137	17	4.6	16	80	11	89	40	2	1	55	1.22
36761054--36761139	11	7.5	11	71	13	57	41	2	2	53	1.26
36761064--36761138	31	2.3	32	86	8	100	41	2	1	54	1.23
36761064--36761150	17	5.4	16	72	12	52	45	2	1	50	1.21
36761854--36761892	3	13.0	3	84	10	53	66	0	2	30	1.05
36761838--36761893	28	2.0	27	86	10	78	64	0	3	32	1.11
36762143--36762208	25	2.6	24	71	17	62	71	7	19	1	1.18
36762951--36763082	30	4.3	30	76	6	104	35	21	5	37	1.76
36763003--36763082	32	2.6	30	84	5	106	35	21	3	40	1.71
36774950--36775550	68	8.8	68	95	0	1013	34	16	20	28	1.94
36774866--36775550	136	4.9	136	92	2	1046	34	16	20	28	1.94
36774866--36775550	204	3.3	204	92	2	1055	34	16	20	28	1.94
36775493--36775750	92	2.8	92	96	0	480	35	17	19	27	1.94
36776017--36776075	6	10.0	6	75	17	61	42	1	1	54	1.20
36776007--36776075	11	6.5	11	73	17	56	42	1	2	53	1.24
36776930--36777010	29	2.7	30	86	3	110	38	20	4	35	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36777025--36777120	30	3.2	29	66	24	74	30	32	2	35	1.70
36778888--36778928	21	2.0	21	85	0	55	26	0	4	68	1.10
36779105--36779140	11	3.4	10	92	7	54	36	2	0	61	1.11
36779442--36779482	22	1.9	21	90	5	64	46	2	2	48	1.28
36779441--36779514	31	2.4	31	88	2	105	50	4	2	43	1.35
36779610--36779637	3	9.3	3	100	0	56	35	0	0	64	0.94
36781103--36781203	29	3.4	29	67	14	82	34	2	27	34	1.72
36781096--36781251	58	2.7	58	87	2	224	32	3	32	32	1.74
36781097--36781251	59	2.7	58	89	3	231	32	3	32	32	1.74
36781125--36781221	29	3.3	29	67	8	79	35	2	30	31	1.70
36781125--36781218	30	3.2	30	67	8	84	32	2	31	32	1.70
36781097--36781275	59	3.1	57	86	6	227	31	3	31	32	1.74
36781242--36781625	30	12.7	30	93	0	597	34	3	25	37	1.73
36782722--36782773	3	16.7	3	80	7	59	40	0	1	57	1.10
36783301--36783338	20	1.9	20	88	0	58	23	15	42	18	1.89
36783506--36783597	17	5.5	16	78	15	80	51	2	3	43	1.30
36783523--36783594	6	12.7	6	74	14	64	52	1	4	41	1.29
36783522--36783597	11	6.8	11	77	8	82	51	1	3	43	1.28
36790022--36790063	5	8.0	5	85	15	50	76	0	23	0	0.79
36790096--36790151	16	3.6	15	81	11	60	78	0	21	0	0.75
36790103--36790151	16	3.2	15	86	11	64	79	0	20	0	0.73
36790020--36790186	88	1.9	89	89	10	263	62	8	21	7	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36792474--36792519	24	2.0	24	83	8	60	19	13	4	63	1.46
36796428--36796496	30	2.3	30	80	7	77	44	5	4	44	1.47
36798160--36798239	17	5.0	16	85	11	110	41	2	1	55	1.21
36798160--36798239	31	2.5	32	86	12	110	41	2	1	55	1.21
36798136--36798257	11	11.1	11	69	18	76	42	1	2	53	1.24
36798136--36798239	6	18.0	6	71	18	69	40	1	2	54	1.26
36799761--36800104	161	2.1	162	87	2	503	26	16	11	45	1.81
36800178--36800502	30	10.9	30	84	3	363	37	24	3	34	1.72
36800178--36800502	90	3.6	89	84	6	404	37	24	3	34	1.72
36800475--36800671	59	3.4	58	74	4	200	28	29	4	36	1.77
36810129--36810258	38	3.4	38	70	14	113	34	12	20	33	1.89
36810296--36810652	37	9.4	36	65	24	148	36	14	20	29	1.92
36810333--36810688	38	9.3	39	68	23	195	35	14	19	30	1.92
36810276--36810790	76	6.8	75	92	1	692	34	15	18	31	1.93
36810485--36810765	38	7.4	38	70	15	186	34	14	18	31	1.92
36810109--36810790	228	2.9	228	83	6	755	34	15	18	31	1.92
36811091--36811159	16	4.0	16	79	17	75	42	1	1	55	1.18
36811091--36811147	20	3.0	20	77	15	75	38	1	1	57	1.19
36811067--36811159	6	16.0	6	71	18	63	40	1	3	54	1.23
36811199--36811268	28	2.5	28	95	2	124	47	24	12	15	1.81
36812766--36813109	161	2.1	162	88	2	512	26	15	11	46	1.80
36813184--36813597	30	13.9	29	82	4	425	37	22	3	36	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36813169--36813589	90	4.7	90	85	5	514	37	22	3	36	1.72
36813570--36813766	59	3.4	58	77	2	216	29	29	4	36	1.76
36815738--36815956	111	2.0	108	84	9	288	45	20	6	27	1.76
36818882--36818944	7	9.4	7	75	16	53	36	3	1	58	1.23
36818876--36818934	18	3.1	18	70	13	55	38	5	1	54	1.33
36818883--36818944	14	4.6	14	71	18	60	35	3	1	59	1.23
36819844--36819877	8	4.4	8	96	3	61	23	0	0	76	0.79
36819863--36819901	11	3.6	11	93	3	62	28	5	0	66	1.12
36820313--36820353	22	1.9	21	90	5	64	46	2	2	48	1.28
36820312--36820384	31	2.4	29	86	4	92	47	4	4	43	1.41
36821459--36821507	23	2.1	24	96	3	91	65	12	6	16	1.45
36824038--36824106	30	2.3	30	80	7	77	44	5	4	44	1.47
36825690--36825730	22	2.0	20	90	9	64	63	0	36	0	0.95
36826003--36826036	18	1.9	18	94	5	61	44	2	5	47	1.42
36827725--36827770	6	7.7	6	97	0	83	34	0	52	13	1.40
36827809--36827873	32	2.0	32	93	0	112	38	15	15	30	1.88
36828357--36828402	15	2.9	16	87	6	67	41	0	2	56	1.11
36829381--36829412	3	10.7	3	100	0	64	34	0	0	65	0.93
36830095--36830360	89	3.0	88	89	2	406	30	12	7	49	1.67
36830799--36831833	264	3.9	263	85	8	1253	34	12	11	40	1.80
36834673--36834734	28	2.1	30	85	11	85	61	3	4	30	1.33
36835354--36835388	15	2.2	16	90	5	54	54	0	2	42	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36835646--36835759	11	10.0	11	72	16	72	39	0	3	56	1.23
36835647--36835778	17	7.4	17	79	13	140	42	0	3	53	1.21
36835647--36835778	6	23.0	6	69	17	93	42	0	3	53	1.21
36836251--36836275	13	1.9	13	100	0	50	20	16	0	64	1.30
36837297--36837403	30	3.6	29	75	13	110	36	27	1	34	1.68
36837822--36838006	96	1.9	96	82	6	232	31	16	12	38	1.87
36838451--36838493	3	14.3	3	100	0	86	34	0	0	65	0.93
36838767--36838800	3	11.3	3	93	0	59	32	2	0	64	1.08
36838627--36839180	275	2.0	282	84	9	745	33	11	11	43	1.77
36841750--36841814	29	2.2	30	81	8	80	38	20	1	40	1.62

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143