genome.fa.s11.2.7.7.80.10.50.1000.11.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032255.1 Gossypioides kirkii chromosome KI_13
Parameters: 2 7 7 80 10 50 1000
Length:  42971368

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   

This is table  11  of  143  ( 17057 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3436280--3437034	76	10.0	76	93	1	1149	33	16	17	32	1.93
3437336--3437404	6	11.5	6	79	11	79	44	2	0	52	1.16
3437320--3437401	17	5.0	17	75	11	82	41	2	1	54	1.21
3437336--3437410	11	6.3	12	75	13	57	45	4	0	50	1.20
3438086--3438136	22	2.5	20	82	14	68	43	1	5	49	1.38
3438133--3438175	18	2.3	19	84	4	52	60	2	4	32	1.30
3439317--3439596	29	9.6	29	71	18	163	35	27	2	33	1.71
3439376--3439632	117	2.2	118	92	0	417	33	29	1	34	1.69
3439376--3439633	59	4.4	59	90	1	392	33	30	1	34	1.69
3439619--3439675	28	2.0	28	86	6	80	26	31	15	26	1.96
3440990--3441031	16	2.7	16	79	17	52	59	2	0	38	1.10
3441089--3441123	14	2.5	14	86	13	54	74	11	2	11	1.18
3442306--3442376	18	3.8	18	85	12	90	7	5	18	69	1.32
3442295--3442376	18	4.2	19	83	13	89	7	6	19	67	1.37
3442335--3442433	49	2.1	48	85	9	134	8	5	20	66	1.37
3442337--3442481	48	3.0	47	80	6	125	9	4	16	69	1.31
3442413--3442487	12	6.3	12	84	3	107	9	1	14	74	1.12
3446164--3446264	47	2.1	47	92	3	168	47	13	4	33	1.65
3446589--3446649	19	3.2	19	81	6	61	62	0	0	37	0.96
3450887--3450925	16	2.5	15	87	4	51	56	0	23	20	1.42
3454158--3454197	19	2.0	22	85	14	59	57	5	0	37	1.21
3456913--3456958	13	3.5	13	84	0	65	52	13	6	28	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3456901--3456958	26	2.3	26	93	3	100	55	10	5	29	1.55
3456909--3456971	26	2.4	26	86	0	81	52	17	4	25	1.64
3457677--3457726	8	7.0	7	76	19	50	42	0	0	58	0.98
3457675--3457739	20	3.0	21	76	13	62	38	0	0	61	0.96
3465425--3465470	16	2.8	17	81	15	53	41	6	0	52	1.27
3482829--3482871	19	2.3	18	80	11	50	58	4	2	34	1.32
3482942--3482987	16	2.8	17	87	9	69	52	0	0	47	1.00
3482943--3482982	14	2.8	14	82	17	55	52	0	0	47	1.00
3489895--3489964	29	2.3	30	85	4	88	34	8	14	42	1.76
3489916--3489985	29	2.4	29	82	2	77	31	8	11	48	1.69
3494413--3495121	84	8.4	84	87	0	986	30	19	17	31	1.95
3499476--3499501	8	3.2	8	100	0	52	88	0	11	0	0.52
3509253--3509292	20	2.0	20	95	0	71	22	10	15	52	1.71
3510455--3510492	15	2.7	14	88	8	51	57	5	0	36	1.21
3510541--3510585	19	2.2	21	80	7	58	53	0	2	44	1.13
3510541--3510589	20	2.4	21	76	10	57	53	0	2	44	1.12
3511114--3511149	3	12.0	3	100	0	72	33	0	0	66	0.92
3514537--3514643	23	4.7	23	78	0	124	16	20	22	40	1.91
3517283--3517344	23	2.7	23	97	0	115	32	19	22	25	1.97
3521873--3521917	22	2.1	21	87	4	63	24	8	0	66	1.20
3521873--3521935	20	3.0	21	83	4	65	28	9	0	61	1.27
3533342--3533382	11	3.7	11	90	0	64	39	41	2	17	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3543468--3543539	32	2.2	33	87	4	103	59	5	1	33	1.29
3543467--3543518	15	3.3	15	75	5	50	65	5	1	26	1.26
3553119--3553825	136	5.3	134	79	8	669	41	17	18	22	1.90
3553046--3553825	267	2.9	266	83	6	868	41	17	18	23	1.90
3558402--3558451	18	2.8	18	81	0	64	22	22	0	56	1.43
3558402--3558446	6	7.5	6	87	0	54	22	24	0	53	1.46
3561001--3561839	459	1.8	459	88	1	1279	26	19	26	27	1.99
3561912--3561937	12	2.2	12	100	0	52	15	30	0	53	1.42
3563727--3563785	21	2.9	21	82	12	61	37	3	1	57	1.25
3566208--3566312	54	1.9	54	88	0	156	13	7	34	44	1.72
3569240--3569285	23	2.0	23	87	8	67	69	2	0	28	1.00
3575844--3576447	302	2.0	302	96	0	1102	29	22	12	34	1.92
3582512--3582952	222	2.0	222	93	0	749	40	17	13	28	1.87
3586470--3586542	36	2.0	36	97	0	137	52	19	4	24	1.63
3610036--3610074	17	2.3	17	86	8	53	69	5	2	23	1.21
3610137--3610195	24	2.4	25	72	11	59	62	1	8	27	1.33
3628230--3628334	32	3.4	31	79	13	101	52	1	0	44	1.18
3628925--3628958	1	34.0	1	93	0	59	0	97	0	2	0.19
3635463--3636662	470	2.5	469	87	2	1701	40	17	14	27	1.88
3636211--3637288	516	2.1	517	87	1	1552	39	17	15	27	1.90
3637218--3637356	70	2.0	70	92	2	235	42	15	15	27	1.86
3637597--3637852	127	2.0	132	83	7	326	33	16	21	28	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3642986--3643038	21	2.5	21	90	0	79	33	26	3	35	1.75
3643027--3643083	21	2.6	21	80	8	60	43	26	5	24	1.75
3643676--3643730	24	2.3	24	90	0	83	36	27	14	21	1.93
3647513--3647575	23	2.7	23	85	9	74	7	23	22	46	1.78
3647554--3647634	23	3.6	22	86	5	117	12	23	28	35	1.91
3649469--3649688	30	7.5	29	68	24	108	35	4	27	33	1.76
3649469--3649662	59	3.3	58	86	2	230	34	3	29	32	1.75
3650340--3650369	14	2.1	14	93	0	51	40	23	23	13	1.90
3650693--3650781	3	28.0	3	74	8	61	38	2	2	57	1.24
3651458--3651554	6	17.0	6	73	14	80	51	4	1	43	1.27
3651458--3651541	17	4.8	17	76	4	87	51	3	1	44	1.26
3653963--3653991	15	2.0	15	93	6	51	10	6	0	82	0.83
3665963--3666038	27	2.9	27	73	13	77	30	10	6	52	1.61
3668587--3668633	24	2.0	24	95	0	85	23	14	19	42	1.88
3668977--3669103	30	4.5	29	81	14	158	48	0	1	50	1.10
3669001--3669043	11	4.1	10	80	19	52	48	0	0	51	1.00
3668977--3669073	52	1.9	50	87	8	142	47	0	1	51	1.07
3671060--3671098	18	2.1	19	86	13	55	43	0	0	56	0.99
3679104--3679197	47	2.0	47	97	0	179	40	15	12	30	1.85
3683268--3683305	18	2.1	18	90	0	58	57	2	0	39	1.12
3683382--3683436	23	2.4	24	76	14	62	49	1	0	49	1.11
3689319--3689408	47	1.9	47	82	13	114	53	1	3	42	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3692241--3692327	42	2.1	41	82	2	102	43	10	12	33	1.77
3694934--3695030	47	2.1	47	98	0	185	39	20	13	26	1.90
3698800--3698838	19	2.1	19	95	0	69	46	0	5	48	1.24
3701832--3701864	11	3.0	11	91	8	50	18	18	30	33	1.94
3703627--3703668	20	2.2	20	82	4	50	11	0	11	76	1.03
3703682--3703907	23	9.7	23	83	4	211	42	18	14	24	1.88
3703753--3703787	12	2.9	12	91	0	61	57	14	8	20	1.63
3703682--3703924	46	5.2	46	82	4	254	42	18	15	23	1.88
3704275--3704483	91	2.3	89	79	6	226	38	19	7	33	1.80
3704560--3704608	19	2.5	20	83	12	66	51	4	0	44	1.20
3704636--3704674	19	2.1	19	85	9	53	64	5	5	25	1.35
3704846--3704903	20	3.0	19	76	19	57	24	5	3	67	1.27
3704866--3704992	60	2.2	55	81	6	146	31	4	2	61	1.29
3704945--3705023	18	4.3	19	83	4	92	29	5	2	63	1.29
3704844--3705023	9	19.0	9	67	19	73	30	5	2	62	1.31
3704974--3705031	18	3.3	17	79	13	55	24	5	1	68	1.19
3705097--3705329	91	2.5	92	75	7	231	35	7	18	38	1.80
3707168--3707313	72	2.1	70	92	7	246	26	36	22	14	1.92
3707229--3707268	21	1.9	21	94	0	71	22	37	20	20	1.94
3717733--3717795	8	8.7	7	78	15	58	80	0	19	0	0.70
3717734--3717783	14	3.2	16	71	28	54	80	0	20	0	0.72
3717752--3717795	6	6.8	6	85	10	52	81	0	18	0	0.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3717743--3717795	21	2.5	23	80	20	71	81	0	18	0	0.70
3717735--3717789	15	3.7	15	77	22	62	80	0	20	0	0.72
3717735--3717794	27	2.1	29	90	6	97	80	0	20	0	0.72
3718679--3718879	49	4.1	48	71	5	125	33	16	28	20	1.95
3719247--3719473	39	5.8	39	75	13	146	31	24	17	26	1.97
3719181--3719534	40	9.0	39	79	7	367	32	23	16	27	1.96
3719183--3719533	117	3.0	118	79	7	343	33	23	16	27	1.95
3719183--3719533	78	4.5	78	83	3	368	33	23	16	27	1.95
3719529--3719569	20	2.0	20	86	9	57	26	19	14	39	1.90
3719561--3720266	79	8.9	78	82	6	708	32	23	17	26	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143