genome.fa.s11.2.7.7.80.10.50.1000.117.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032255.1 Gossypioides kirkii chromosome KI_13
Parameters: 2 7 7 80 10 50 1000
Length:  42971368

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   

This is table  117  of  143  ( 17057 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35524761--35525086	152	2.1	152	94	0	580	34	19	22	22	1.96
35525182--35525714	206	2.6	206	92	0	879	36	19	22	21	1.95
35526029--35526104	17	4.5	17	78	15	68	42	1	3	52	1.28
35527852--35528256	29	13.8	29	75	12	289	35	25	5	34	1.79
35527852--35528254	30	13.7	30	75	13	308	35	25	5	34	1.78
35540413--35540669	68	3.8	68	93	2	432	28	16	6	49	1.70
35540702--35540736	17	2.1	17	88	0	52	40	0	2	57	1.14
35541439--35541508	17	4.2	17	75	1	79	40	2	4	52	1.36
35543326--35543408	30	2.7	31	73	12	82	36	22	2	38	1.68
35543384--35543440	31	1.9	30	85	7	80	35	22	1	40	1.65
35543414--35543816	29	13.9	29	68	16	201	33	24	3	38	1.73
35543388--35543800	59	7.1	58	76	12	339	35	23	3	37	1.73
35543413--35543800	58	6.7	58	76	10	355	34	23	3	38	1.73
35543399--35543800	117	3.4	117	85	6	446	34	23	3	38	1.73
35555397--35555440	21	2.1	21	95	0	79	31	11	36	20	1.88
35555418--35556215	49	16.3	49	75	11	591	38	18	24	17	1.92
35555418--35556287	98	8.9	99	85	4	1090	38	18	24	18	1.93
35556697--35556784	17	5.2	17	79	4	106	42	2	3	52	1.31
35557563--35557596	12	2.8	12	90	0	50	8	44	32	14	1.76
35558703--35558969	29	9.1	30	66	17	100	33	24	2	38	1.71
35558705--35559149	59	7.6	59	79	6	449	33	24	3	38	1.72
35558703--35559145	175	2.5	176	84	5	542	33	24	3	37	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35559077--35559178	29	3.5	29	78	7	100	35	23	4	36	1.77
35564434--35564522	33	2.9	31	77	8	92	39	11	10	39	1.75
35564662--35564741	31	2.6	31	82	5	92	50	11	6	32	1.63
35570441--35570483	18	2.4	18	88	7	61	53	0	0	46	1.00
35573711--35573809	17	5.9	17	78	2	103	38	3	5	53	1.38
35573709--35573819	34	3.3	34	79	5	127	40	3	4	51	1.40
35573773--35573816	22	2.0	23	90	4	72	43	2	0	54	1.12
35573708--35573819	6	19.7	6	73	14	76	41	3	4	50	1.40
35574489--35574550	9	6.6	9	78	10	61	51	0	3	45	1.17
35575649--35575920	29	9.3	30	70	19	125	36	25	3	34	1.74
35575662--35575934	58	4.7	60	83	8	300	34	26	3	35	1.74
35575911--35575976	28	2.3	29	79	10	82	31	30	7	30	1.85
35576881--35577168	29	9.8	30	74	11	208	35	2	23	38	1.68
35576880--35577168	59	4.9	58	74	11	216	35	2	23	38	1.68
35578263--35578322	9	6.3	9	75	11	57	43	3	1	51	1.28
35579015--35579065	16	3.1	16	80	5	57	50	3	5	39	1.45
35579994--35580327	49	6.8	49	74	6	284	17	29	17	35	1.93
35579994--35580575	98	6.1	98	80	6	622	17	27	17	37	1.93
35580243--35580409	84	2.0	84	86	2	237	16	29	17	35	1.93
35580145--35580477	182	1.8	182	88	0	504	17	28	18	35	1.93
35580454--35580578	49	2.6	48	77	10	137	17	23	17	41	1.90
35581529--35581573	23	2.0	23	90	0	72	6	15	2	75	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35581557--35581641	27	3.2	27	86	8	104	0	23	0	76	0.79
35581534--35581625	10	9.4	10	65	16	50	2	20	1	76	0.96
35581566--35581639	14	5.5	13	74	17	62	0	22	0	77	0.78
35581583--35581655	27	2.7	27	87	6	94	2	20	0	76	0.90
35581596--35581654	25	2.3	26	83	11	70	3	20	0	76	0.93
35581785--35581857	35	2.1	35	94	0	128	31	19	9	39	1.84
35583936--35583981	18	2.6	18	82	6	58	41	2	23	32	1.67
35584084--35584144	23	2.6	24	79	7	72	13	31	13	42	1.82
35584149--35584227	23	3.5	22	86	5	104	13	22	26	36	1.92
35590517--35590549	16	2.1	16	88	11	50	60	15	0	24	1.35
35596944--35597279	49	6.8	49	76	3	237	37	19	25	16	1.93
35597042--35597287	98	2.5	100	88	3	347	37	17	26	18	1.93
35597042--35597319	98	2.8	96	80	4	322	37	17	26	17	1.93
35606146--35606319	51	3.3	52	78	10	190	25	20	14	39	1.90
35606145--35606326	56	3.4	54	79	9	169	25	20	13	40	1.89
35608260--35608295	18	2.0	18	88	0	54	30	5	8	55	1.52
35608455--35608682	61	3.7	62	86	3	318	30	19	15	35	1.93
35612188--35612235	12	3.7	12	77	20	51	47	0	10	41	1.37
35612401--35612625	83	3.0	70	84	12	220	38	6	4	51	1.46
35612472--35612629	83	1.9	83	97	0	298	38	5	4	51	1.46
35614303--35614359	24	2.4	24	81	0	69	26	33	31	8	1.87
35615760--35616085	61	5.6	59	79	12	334	34	14	22	28	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35615956--35616051	47	2.0	48	93	2	167	37	14	20	27	1.92
35616011--35616166	81	1.9	81	93	0	267	38	16	18	26	1.91
35616202--35616345	58	2.5	57	75	10	139	31	18	20	28	1.97
35619468--35619522	26	2.0	27	82	6	67	45	30	3	20	1.68
35619911--35620010	17	5.9	17	77	0	101	37	5	4	54	1.41
35619911--35620010	34	2.9	34	78	0	119	37	5	4	54	1.41
35620169--35620229	26	2.3	26	100	0	122	27	31	21	19	1.97
35621771--35621875	30	3.6	30	82	7	110	38	24	0	36	1.62
35621946--35622035	45	2.0	45	100	0	180	22	28	11	37	1.88
35624459--35624523	17	3.8	17	70	0	67	56	6	4	32	1.44
35628869--35628985	55	2.1	55	83	0	144	33	9	10	47	1.70
35632394--35632448	16	3.4	16	84	0	65	43	5	21	29	1.75
35632646--35632689	19	2.3	19	88	0	61	56	0	2	40	1.11
35632603--35632686	26	3.1	27	75	13	75	55	1	1	41	1.15
35637534--35637580	20	2.3	21	85	3	69	51	14	8	25	1.71
35638987--35639455	49	9.6	49	72	9	312	19	24	18	37	1.93
35638937--35639455	98	5.3	98	85	1	657	19	24	18	38	1.93
35639878--35639914	18	2.1	18	89	0	56	62	10	8	18	1.52
35641411--35641463	11	4.6	11	76	6	52	45	1	0	52	1.11
35641411--35641454	17	2.7	16	82	6	61	40	2	0	56	1.11
35641414--35641491	29	2.7	29	80	5	79	41	2	2	53	1.28
35643222--35643317	30	3.2	29	81	10	113	43	18	3	34	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35643208--35643324	60	2.0	59	83	8	148	40	21	3	35	1.70
35645247--35645280	10	3.5	10	92	4	52	26	8	0	64	1.22
35648002--35648074	38	1.9	38	91	0	119	46	10	6	35	1.66
35652770--35652861	42	2.2	42	86	3	123	25	17	27	30	1.97
35658491--35658542	22	2.4	22	93	0	86	36	13	13	36	1.84
35661036--35661077	3	13.7	3	85	5	57	61	0	0	38	0.96
35661028--35661061	9	3.6	10	88	11	54	67	0	0	32	0.91
35661036--35661080	15	2.9	15	90	3	63	57	0	0	42	0.98
35661387--35661428	17	2.5	17	84	3	50	35	4	2	57	1.33
35661981--35662019	20	2.0	20	100	0	78	23	10	5	61	1.48
35662895--35663112	29	7.5	30	72	15	163	32	25	3	38	1.74
35662888--35663140	58	4.3	59	83	6	282	33	23	3	39	1.71
35662897--35663193	58	5.1	57	79	7	258	32	23	4	39	1.74
35663161--35663226	28	2.3	28	87	7	89	27	33	7	31	1.85
35662897--35663221	118	2.8	116	80	8	313	32	24	4	38	1.76
35663178--35663239	28	2.2	28	91	5	99	33	29	8	29	1.86
35664882--35665244	29	12.4	28	68	17	116	35	24	3	36	1.74
35664962--35665315	58	6.1	57	77	9	313	35	23	5	35	1.77
35664962--35665305	116	2.9	117	80	10	357	35	23	4	36	1.77
35664991--35665300	29	10.7	29	71	15	158	35	24	4	35	1.77
35665047--35665319	29	9.4	29	71	15	165	34	23	5	36	1.78
35669749--35669786	15	2.4	16	86	8	51	86	2	10	0	0.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35670385--35670454	13	5.2	12	75	21	59	80	4	14	1	0.94
35670384--35670454	28	2.5	29	81	4	83	78	4	15	1	0.97
35671441--35671878	50	8.9	49	73	10	309	32	17	30	19	1.95
35671407--35671881	99	4.8	99	81	2	510	32	18	30	18	1.95
35672518--35672902	30	13.1	28	73	14	217	35	23	3	36	1.74
35672595--35672902	59	5.3	59	78	8	263	36	24	4	34	1.76
35672518--35672850	118	2.8	117	78	8	318	36	24	3	36	1.71
35672770--35672906	28	4.8	29	79	11	138	36	25	5	32	1.78
35674063--35674132	29	2.3	31	75	4	72	50	5	1	42	1.35
35674109--35674155	15	3.1	15	82	8	51	55	4	0	40	1.19

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143