genome.fa.s11.2.7.7.80.10.50.1000.42.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032255.1 Gossypioides kirkii chromosome KI_13
Parameters: 2 7 7 80 10 50 1000
Length:  42971368

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   

This is table  42  of  143  ( 17057 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13187917--13187966	16	3.2	16	73	21	61	60	8	0	32	1.26
13187999--13188093	30	3.2	30	68	14	79	36	6	12	44	1.68
13189956--13189999	21	2.1	21	87	8	63	25	34	13	27	1.93
13190220--13190265	7	6.6	7	87	0	56	50	26	0	23	1.50
13190220--13190265	21	2.2	21	92	0	74	50	26	0	23	1.50
13190236--13190274	14	2.8	13	81	11	51	46	28	2	23	1.65
13195845--13195897	24	2.2	24	80	6	63	43	0	0	56	0.99
13195827--13195945	61	1.9	62	89	1	186	45	2	0	51	1.20
13196122--13196157	16	2.2	16	90	0	54	33	27	0	38	1.57
13196403--13196489	44	2.0	44	100	0	174	19	27	25	27	1.99
13200106--13200136	14	2.2	14	94	0	53	74	6	0	19	1.03
13200453--13200490	20	1.9	20	94	0	67	39	0	0	60	0.97
13200715--13200760	12	3.7	13	78	18	53	60	0	0	39	0.97
13201239--13201271	7	4.7	7	96	0	57	60	9	0	30	1.27
13202436--13202555	34	3.5	34	80	7	136	22	24	13	40	1.90
13204167--13204216	21	2.4	21	86	0	64	34	28	12	26	1.92
13204279--13204336	24	2.6	22	81	13	66	36	24	12	27	1.91
13204971--13205158	94	2.0	94	95	0	340	23	28	21	26	1.99
13209813--13209860	24	2.0	25	95	4	89	45	12	8	33	1.72
13210995--13211048	21	2.6	21	84	0	72	37	24	9	29	1.86
13211803--13212122	94	3.4	94	85	3	423	31	23	18	26	1.97
13213909--13213941	16	2.1	16	94	0	57	45	6	0	48	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13216919--13217237	94	3.4	92	82	4	342	31	23	17	27	1.97
13221759--13222709	322	3.0	322	94	0	1652	30	20	17	31	1.96
13224305--13224354	23	2.2	23	82	7	57	64	4	8	24	1.38
13224979--13225155	30	5.9	30	75	14	134	31	22	9	37	1.85
13224968--13225156	60	3.2	60	74	13	165	30	23	8	37	1.86
13229513--13229545	15	2.1	16	88	5	50	69	3	24	3	1.16
13229524--13229592	9	6.8	10	73	16	54	75	0	23	1	0.89
13230534--13230590	18	3.4	18	68	26	54	77	1	21	0	0.86
13230542--13230592	26	2.0	26	85	14	70	76	1	21	0	0.88
13231438--13231723	49	5.9	49	74	7	206	35	16	26	21	1.94
13231950--13232970	123	8.2	123	82	2	1123	39	16	20	23	1.92
13231950--13232970	375	2.8	369	82	3	1210	39	16	20	23	1.92
13232793--13232885	48	1.9	48	86	0	132	38	15	23	22	1.92
13232877--13233068	98	2.0	98	93	0	330	37	16	20	25	1.93
13232747--13233929	246	5.0	222	80	9	843	39	17	20	22	1.93
13232975--13234149	123	9.6	123	84	2	1464	39	17	20	22	1.92
13233628--13233719	48	1.9	48	90	0	148	41	15	21	21	1.90
13233874--13233965	48	1.9	48	90	0	148	38	16	23	21	1.93
13234222--13234321	46	2.2	46	85	0	137	32	24	16	28	1.96
13235279--13235308	3	10.3	3	92	7	53	33	0	0	66	0.92
13235280--13235311	14	2.3	14	100	0	64	34	0	0	65	0.93
13236229--13236385	30	5.2	29	85	3	161	33	21	6	39	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13238634--13238668	18	1.9	18	94	0	61	40	11	14	34	1.82
13239921--13240356	23	19.0	23	86	0	559	47	14	5	33	1.66
13240748--13241001	36	7.1	36	87	0	346	37	22	10	29	1.87
13246211--13246249	17	2.3	17	90	0	60	15	12	25	46	1.81
13246239--13246334	41	2.3	41	94	0	165	28	6	29	36	1.81
13250021--13250059	14	2.8	14	88	7	53	30	0	5	64	1.15
13250459--13250499	16	2.6	17	81	14	52	34	0	2	63	1.08
13264050--13264129	41	2.0	40	95	4	144	51	7	11	30	1.65
13267560--13267623	28	2.2	28	83	8	76	32	25	12	29	1.92
13267659--13267713	29	1.9	29	82	10	69	27	20	21	30	1.98
13284799--13284823	12	2.1	12	100	0	50	16	28	16	40	1.89
13290635--13291100	166	2.8	165	88	2	692	22	17	17	42	1.89
13294582--13294619	13	2.7	15	88	8	53	50	10	2	36	1.51
13299003--13299054	21	2.5	21	78	6	61	30	26	13	28	1.94
13303627--13303655	14	2.0	15	93	6	51	27	0	3	68	1.05
13303620--13303669	20	2.5	20	83	9	57	26	2	2	70	1.09
13308706--13308774	30	2.3	30	89	0	102	31	28	21	17	1.96
13309384--13309462	35	2.3	34	82	10	97	22	2	6	68	1.25
13315090--13315143	18	3.0	17	80	17	56	24	1	5	68	1.21
13315089--13315146	28	2.1	28	84	12	75	27	1	6	63	1.29
13334975--13335128	41	3.7	41	82	6	177	35	12	25	25	1.91
13334974--13335168	41	4.6	41	83	3	176	34	11	27	26	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13335821--13335868	21	2.3	21	85	7	62	33	10	25	31	1.89
13339883--13339947	3	22.7	3	71	20	50	0	38	0	61	0.96
13362889--13362932	6	7.2	6	85	14	63	0	18	0	81	0.68
13394437--13394465	11	2.5	12	94	5	51	62	0	0	37	0.96
13407112--13407153	20	2.0	22	86	9	61	54	4	9	30	1.53
13407693--13407840	59	2.5	59	79	6	156	35	25	3	36	1.73
13407673--13407836	89	1.8	89	80	8	199	35	23	3	36	1.73
13407665--13407933	30	9.1	30	75	7	124	33	27	4	33	1.78
13416457--13417080	99	6.3	99	75	7	457	34	17	32	16	1.92
13416595--13417006	149	2.8	150	75	7	370	34	17	32	15	1.92
13416497--13417080	198	2.9	197	80	6	576	34	16	32	16	1.92
13416497--13417079	50	11.8	50	72	6	348	34	16	32	16	1.92
13417539--13417595	17	3.4	17	79	13	64	35	3	1	59	1.25
13417550--13417602	17	3.1	17	91	0	88	41	1	1	54	1.22
13419322--13419433	30	3.8	29	84	12	129	37	20	1	40	1.63
13419332--13419523	58	3.3	54	76	13	177	34	25	4	35	1.75
13419332--13419577	58	4.2	56	77	10	174	34	26	4	34	1.78
13419332--13419577	29	8.5	28	77	10	133	34	26	4	34	1.78
13419431--13419597	29	5.8	29	77	12	98	32	29	6	31	1.83
13424114--13424147	15	2.2	16	89	5	52	35	5	2	55	1.39
13427928--13427981	29	2.0	26	82	10	63	27	9	1	61	1.37
13436791--13437016	112	2.0	112	98	0	434	30	20	20	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13438489--13439122	49	12.8	48	75	8	299	47	17	15	19	1.83
13438487--13439071	97	5.9	98	78	4	444	47	17	15	19	1.83
13438562--13439022	49	9.4	49	79	4	365	48	18	13	19	1.81
13438562--13439021	99	4.7	97	80	5	404	48	18	13	20	1.81
13438487--13439071	198	3.0	197	78	4	536	47	17	15	19	1.83
13438587--13439042	148	3.1	149	81	4	408	47	17	15	19	1.83
13440664--13440736	38	1.9	37	81	13	87	24	1	6	67	1.23
13440971--13441038	29	2.5	25	76	19	73	29	5	5	58	1.45
13447076--13447123	20	2.3	21	86	10	64	4	10	10	75	1.18
13447278--13447320	17	2.5	17	80	0	50	11	4	27	55	1.55
13447695--13447788	40	2.4	39	76	15	95	31	15	23	28	1.96
13447738--13448266	40	13.0	40	78	2	369	23	16	29	31	1.96
13447829--13448231	124	3.3	123	80	5	361	22	15	30	31	1.95
13447931--13448266	124	2.7	124	81	5	378	22	14	30	31	1.94
13460205--13460236	6	5.2	6	92	7	55	0	18	0	81	0.70
13460205--13460236	13	2.6	12	95	5	55	0	18	0	81	0.70
13460832--13460878	17	2.8	17	76	23	55	57	8	17	17	1.63
13461291--13461324	12	2.8	12	90	0	50	5	35	0	58	1.22
13475012--13475059	15	3.3	14	78	18	53	2	29	0	68	1.01
13475010--13475051	21	2.0	21	85	0	57	2	26	0	71	0.98
13476673--13476726	23	2.3	23	100	0	108	24	14	29	31	1.95
13479165--13479294	30	4.3	30	77	5	127	40	21	5	32	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13479179--13479279	31	3.3	30	83	4	105	41	18	3	35	1.69
13479169--13479294	61	2.1	61	79	4	139	42	22	4	30	1.74
13490933--13491059	50	2.5	50	82	2	139	37	17	23	21	1.94
13491115--13491326	79	2.7	78	83	5	241	32	26	15	25	1.96
13491115--13491325	39	5.4	39	79	7	230	32	26	15	26	1.96
13492799--13492852	25	2.1	26	86	10	76	35	1	22	40	1.65
13492816--13492866	25	2.0	25	84	0	66	39	1	13	45	1.55
13493151--13493274	30	4.1	30	83	7	146	41	22	3	32	1.70
13494951--13495000	24	2.1	24	92	0	82	24	12	6	58	1.56
13494959--13495014	24	2.3	24	84	0	67	30	12	7	50	1.67

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143