genome.fa.s11.2.7.7.80.10.50.1000.123.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032255.1 Gossypioides kirkii chromosome KI_13
Parameters: 2 7 7 80 10 50 1000
Length:  42971368

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   

This is table  123  of  143  ( 17057 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36555858--36555936	11	6.9	11	77	16	63	53	3	0	43	1.19
36555855--36555918	31	2.1	31	90	0	101	51	3	0	45	1.17
36555819--36555926	42	2.5	43	80	7	114	47	1	0	50	1.18
36555856--36555926	17	4.4	16	84	12	92	53	2	0	43	1.15
36556203--36556505	68	4.4	67	89	3	444	27	20	16	34	1.94
36556417--36556920	136	3.7	131	86	8	564	27	20	17	34	1.95
36556263--36556749	243	2.0	243	94	1	852	27	20	17	34	1.96
36556485--36556920	68	6.4	68	97	0	782	27	20	17	34	1.95
36556270--36556817	243	2.3	241	87	6	790	27	21	17	34	1.96
36568847--36569280	59	7.4	59	89	0	638	34	6	28	30	1.82
36568884--36569278	29	13.4	29	65	16	154	35	6	27	30	1.81
36569266--36569457	30	6.4	30	89	1	278	35	3	22	37	1.72
36569272--36569457	90	2.1	89	94	1	327	35	3	22	38	1.72
36571218--36571255	12	2.9	14	84	11	53	15	18	28	36	1.92
36571333--36571440	6	18.0	6	75	14	89	48	1	0	49	1.18
36571376--36571425	25	2.0	25	88	0	73	54	4	0	42	1.19
36571369--36571432	31	2.1	31	91	5	103	53	3	0	43	1.16
36571347--36571440	42	2.3	43	83	5	113	50	2	0	47	1.13
36571370--36571440	17	4.4	16	79	16	85	54	2	0	42	1.14
36573322--36573360	11	3.6	11	89	3	62	46	2	0	51	1.14
36574186--36574226	11	3.8	11	87	3	57	53	0	0	46	1.00
36576416--36576490	35	2.3	31	82	13	87	44	2	0	53	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36577027--36577068	21	2.0	21	90	0	66	35	21	16	26	1.94
36581323--36581764	88	5.0	85	78	8	424	29	7	20	42	1.79
36581337--36581764	173	2.4	174	81	11	482	30	7	19	42	1.79
36587470--36587508	17	2.3	17	90	0	60	46	25	12	15	1.81
36595536--36595606	33	2.2	33	92	0	115	40	1	1	56	1.17
36595557--36595607	16	3.1	16	68	15	50	43	0	0	56	0.99
36598493--36598603	20	5.6	20	68	10	66	43	12	8	36	1.72
36598652--36598767	20	5.8	20	75	10	78	41	11	7	39	1.70
36599274--36599359	20	4.2	21	72	10	72	34	6	8	50	1.59
36599317--36599379	20	3.1	19	82	11	63	38	9	4	47	1.57
36612226--36612254	15	1.9	15	100	0	58	34	20	20	24	1.97
36619431--36619524	27	3.4	27	80	2	98	47	9	3	39	1.52
36619439--36619510	27	2.6	28	91	2	119	48	6	4	40	1.49
36619439--36619527	28	3.2	26	80	4	88	48	7	3	40	1.49
36625548--36625573	7	3.7	7	100	0	52	76	23	0	0	0.78
36642898--36642936	20	2.0	20	85	10	53	43	2	0	53	1.14
36648546--36648621	39	1.9	39	97	0	143	31	19	22	26	1.98
36653771--36653802	16	1.9	17	93	6	57	37	0	0	62	0.95
36654556--36654586	15	2.0	16	93	6	55	45	0	0	54	0.99
36654770--36654841	13	5.4	13	75	9	56	59	0	4	36	1.17
36654771--36654849	39	2.0	39	97	0	149	58	0	3	37	1.16
36654770--36654846	7	11.4	7	74	22	51	59	0	3	36	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36654969--36654994	7	3.7	7	100	0	52	76	11	0	11	1.01
36658986--36659088	46	2.2	46	87	0	143	44	13	9	32	1.76
36664469--36664493	3	8.3	3	100	0	50	64	0	0	36	0.94
36664492--36664519	3	9.3	3	100	0	56	35	0	0	64	0.94
36663179--36665531	654	3.6	652	74	10	2093	35	8	10	45	1.69
36666589--36666649	22	2.7	23	70	7	63	54	0	0	45	1.00
36669861--36669895	16	2.2	16	90	10	54	34	14	28	22	1.93
36675934--36675986	3	17.7	3	92	0	88	64	0	35	0	0.94
36676895--36676935	18	2.2	20	91	8	68	14	29	4	51	1.63
36678941--36679223	30	9.5	30	75	7	220	40	1	18	40	1.59
36678919--36679214	119	2.5	119	88	2	445	40	1	19	38	1.60
36678919--36679214	59	5.0	60	87	3	395	40	1	19	38	1.60
36681052--36681103	18	2.9	17	83	13	61	59	5	0	34	1.21
36682381--36682418	11	3.5	11	80	20	53	0	47	23	28	1.52
36682367--36682419	21	2.5	21	93	0	88	0	47	20	32	1.51
36682409--36682562	66	2.3	66	90	0	245	14	24	17	42	1.87
36687995--36688061	33	2.1	33	97	2	127	41	8	5	43	1.60
36688081--36688217	22	6.3	21	70	17	93	51	0	1	45	1.15
36688081--36688162	4	20.0	4	73	14	69	52	0	1	46	1.08
36688120--36688162	18	2.4	18	84	7	61	53	0	0	46	1.00
36688180--36688217	12	3.4	11	85	14	51	55	0	0	44	0.99
36688253--36688430	18	9.6	18	66	21	57	48	2	1	47	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36688238--36689655	112	12.9	111	88	4	2058	48	4	1	45	1.31
36688465--36689637	18	63.4	18	67	13	324	48	4	1	45	1.31
36688140--36689650	336	4.6	333	90	3	2285	48	3	1	45	1.31
36688799--36688835	10	3.9	10	82	13	51	56	8	0	35	1.29
36688617--36689593	318	3.0	310	89	5	1396	48	4	1	45	1.31
36689079--36689239	46	3.2	45	67	24	117	45	4	2	47	1.36
36693876--36694336	41	11.3	41	83	5	474	22	25	27	24	2.00
36693876--36694336	123	3.8	121	83	5	556	22	25	27	24	2.00
36698721--36699924	358	3.4	353	81	6	1280	36	10	9	43	1.73
36700810--36700851	21	2.0	21	85	0	57	35	4	14	45	1.66
36701710--36701741	11	2.9	11	95	0	55	37	0	3	59	1.13
36701721--36701762	20	2.3	17	88	12	57	40	4	0	54	1.21
36703623--36703952	30	11.3	30	73	11	199	38	21	2	37	1.67
36703600--36703952	59	6.0	61	73	13	244	38	21	2	37	1.67
36703633--36703949	57	5.4	59	75	8	220	39	20	2	38	1.66
36703623--36703967	29	11.8	29	71	12	149	38	21	2	37	1.67
36703930--36703986	29	2.0	29	82	0	69	35	28	5	31	1.79
36703934--36704071	58	2.4	59	79	6	138	32	28	6	31	1.83
36703930--36704123	58	3.3	57	75	11	137	32	27	6	34	1.82
36703960--36704123	58	2.8	58	76	9	147	31	28	6	32	1.83
36716351--36717468	201	5.5	201	88	2	1422	36	20	21	21	1.96
36717835--36717879	6	8.0	6	80	14	60	46	0	2	51	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36717824--36717879	17	3.4	16	90	2	76	44	0	3	51	1.18
36717824--36717878	11	5.0	11	80	10	51	43	0	3	52	1.18
36718550--36718575	12	2.2	12	100	0	52	50	0	0	50	1.00
36719738--36720010	30	9.2	30	76	9	222	37	21	3	37	1.70
36719735--36720000	60	4.4	60	78	9	269	36	21	3	38	1.70
36719735--36719995	90	2.9	89	81	6	303	36	21	3	39	1.70
36719747--36720053	89	3.4	87	77	9	228	35	23	3	37	1.71
36723457--36723497	21	1.9	21	85	5	55	36	19	19	24	1.95
36723993--36724120	3	42.7	3	84	0	121	1	10	31	57	1.42
36724423--36725617	358	3.3	362	83	6	1454	35	9	10	44	1.71
36725500--36725528	3	9.7	3	100	0	58	34	0	0	65	0.93
36727375--36727578	30	6.8	30	82	9	222	33	1	24	40	1.66
36727375--36727578	90	2.3	91	83	5	263	33	1	24	40	1.66
36727385--36727580	60	3.3	60	83	7	272	35	2	22	39	1.66
36728593--36728627	16	2.2	16	90	5	54	51	0	2	45	1.16
36729280--36729340	17	3.7	16	80	6	68	54	4	0	40	1.22
36729330--36729363	17	2.0	17	88	0	50	52	11	0	35	1.38
36729947--36730728	59	13.3	58	85	5	968	32	27	3	36	1.75
36729947--36730729	117	6.7	118	88	3	1073	32	27	3	36	1.75
36730710--36730768	27	2.1	27	90	3	91	32	33	8	25	1.86
36742871--36743097	40	5.5	41	65	23	116	33	18	18	29	1.95
36742954--36743061	38	2.8	38	73	13	114	31	16	15	36	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36743080--36743238	51	3.4	48	67	22	129	37	18	18	25	1.94
36743033--36743285	91	2.8	91	89	1	375	36	18	18	26	1.94
36743116--36743662	167	3.4	158	81	11	596	33	17	17	31	1.93
36743209--36743390	38	4.8	38	73	13	160	32	17	16	34	1.92
36743209--36743681	76	6.0	76	83	7	597	33	16	18	32	1.93
36743116--36743648	243	2.2	243	98	0	1021	34	16	18	30	1.93
36743507--36743633	38	3.3	38	73	12	134	34	14	18	33	1.90
36744031--36744089	6	9.8	6	73	14	50	38	3	1	55	1.26
36744047--36744074	14	2.0	14	100	0	56	35	7	0	57	1.26
36746085--36746480	29	13.5	30	67	21	189	33	28	4	34	1.77

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143