genome.fa.s11.2.7.7.80.10.50.1000.38.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032255.1 Gossypioides kirkii chromosome KI_13
Parameters: 2 7 7 80 10 50 1000
Length:  42971368

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   

This is table  38  of  143  ( 17057 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11681071--11681178	41	2.5	41	82	5	117	41	18	24	15	1.89
11682031--11682448	78	5.4	78	81	3	441	25	29	20	25	1.99
11682029--11682445	156	2.7	156	81	2	523	25	29	19	25	1.99
11682032--11682509	39	12.3	38	67	16	167	25	29	19	25	1.98
11682032--11682513	156	3.1	156	77	6	469	25	29	19	25	1.98
11682953--11683029	17	4.6	17	72	3	75	36	1	5	57	1.30
11682955--11682995	16	2.5	16	84	4	55	34	0	4	60	1.18
11682953--11683032	34	2.4	34	85	6	101	38	1	5	55	1.30
11683045--11683092	19	2.5	20	86	10	64	50	25	6	18	1.70
11684588--11684790	29	7.0	29	79	9	132	37	27	1	33	1.66
11684623--11684872	29	8.6	29	81	8	235	38	27	0	33	1.63
11684613--11684872	59	4.4	59	81	6	219	37	28	0	33	1.63
11684880--11684945	29	2.2	31	86	5	91	36	15	4	43	1.67
11687774--11688267	49	10.1	47	76	7	179	21	26	14	37	1.92
11687774--11688267	98	5.1	96	80	7	482	21	26	14	37	1.92
11687823--11688348	147	3.6	145	81	5	567	22	25	15	37	1.93
11688261--11688362	50	2.0	51	85	11	138	23	19	16	40	1.91
11688368--11688876	99	5.2	100	72	11	343	24	19	19	37	1.94
11690621--11690743	62	1.9	66	85	9	175	11	17	13	56	1.66
11690621--11690759	62	2.2	65	83	8	171	10	18	12	58	1.61
11694333--11694389	20	3.0	20	74	23	59	50	0	1	47	1.11
11694342--11694414	29	2.4	31	93	4	123	52	0	1	46	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11694342--11694421	30	2.7	29	83	9	99	50	0	1	48	1.08
11695630--11695729	29	3.4	29	87	6	150	50	0	0	50	1.00
11695689--11695732	23	2.0	22	87	12	65	56	0	0	43	0.99
11697090--11697123	14	2.4	14	90	0	50	17	23	20	38	1.93
11697099--11697191	6	14.3	6	75	12	78	20	17	15	47	1.83
11697099--11697191	13	7.2	12	80	10	78	20	17	15	47	1.83
11697123--11697191	20	3.5	20	73	15	63	20	17	13	49	1.79
11699524--11699578	3	18.3	3	100	0	110	67	0	0	32	0.91
11703788--11703819	2	16.0	2	93	0	55	50	46	0	3	1.17
11707212--11707283	26	2.6	27	76	12	67	59	4	27	8	1.45
11708407--11709454	352	3.0	353	98	0	2053	33	13	26	27	1.93
11715015--11715069	12	4.3	12	78	17	58	1	20	0	78	0.85
11715014--11715071	26	2.2	26	88	11	84	1	18	0	79	0.82
11725475--11725530	21	2.5	24	85	8	73	37	28	5	28	1.79
11726114--11726353	51	4.6	51	84	3	275	28	22	15	34	1.94
11726114--11726353	102	2.3	104	86	2	313	28	22	15	34	1.94
11739065--11739118	22	2.5	22	90	6	83	61	16	0	22	1.35
11745500--11745553	22	2.5	22	87	6	74	59	16	1	22	1.47
11745585--11745609	13	1.9	13	100	0	50	80	4	0	16	0.87
11753722--11753790	32	2.2	32	89	2	104	30	17	27	24	1.97
11760397--11760687	52	5.6	52	91	0	474	36	24	14	25	1.93
11776853--11776877	11	2.3	11	100	0	50	32	0	12	56	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11784181--11784251	32	2.2	32	82	0	79	21	18	36	23	1.95
11784274--11784319	22	2.1	22	84	4	58	10	0	34	54	1.36
11787166--11787227	21	3.0	21	85	4	72	29	8	25	37	1.85
11791205--11791353	18	8.3	18	88	0	190	29	23	22	24	1.99
11794664--11794706	21	2.0	22	82	13	54	2	20	2	74	1.04
11795284--11795327	18	2.5	18	88	3	63	59	13	9	18	1.60
11809105--11809225	18	6.7	18	83	3	136	35	24	20	19	1.95
11809100--11809235	18	7.5	18	82	4	85	36	23	20	19	1.95
11815317--11815734	23	18.2	23	91	0	658	32	5	15	46	1.68
11819173--11819206	16	2.1	16	88	5	50	35	0	14	50	1.44
11819503--11819948	23	19.4	23	90	0	685	33	5	14	46	1.68
11820028--11820131	36	2.9	35	83	13	140	29	8	24	37	1.85
11823310--11823388	32	2.5	32	91	0	122	50	18	2	27	1.60
11824474--11824510	17	2.1	18	90	5	58	48	10	13	27	1.75
11834494--11834534	21	2.0	21	90	4	66	46	36	2	14	1.58
11836977--11837013	3	12.3	3	94	0	65	64	0	2	32	1.07
11841226--11841274	12	3.9	12	79	10	62	20	18	22	38	1.93
11847708--11847838	65	2.0	65	96	0	244	27	22	18	31	1.97
11852636--11852688	21	2.5	22	84	9	65	64	1	1	32	1.15
11854561--11854611	13	3.7	13	75	19	50	49	0	0	50	1.00
11854559--11854611	21	2.5	20	77	19	63	47	0	0	52	1.00
11854561--11854612	8	7.2	8	74	22	53	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11857928--11857952	12	2.1	12	100	0	50	36	24	8	32	1.84
11857970--11858003	15	2.3	15	100	0	68	47	11	0	41	1.40
11861683--11861731	6	8.0	6	84	4	62	44	2	0	53	1.12
11861675--11861726	25	2.1	25	100	0	104	40	0	0	59	0.97
11865608--11865661	24	2.2	24	80	6	65	16	37	0	46	1.48
11874499--11874538	17	2.4	17	86	0	53	15	20	12	52	1.74
11876883--11876935	27	1.9	28	82	17	67	54	0	1	43	1.11
11876883--11876943	28	2.1	29	82	14	74	54	0	1	44	1.10
11903726--11903774	25	2.0	25	88	8	73	48	14	0	36	1.44
11903729--11903783	25	2.2	25	81	12	60	52	12	1	32	1.50
11921876--11921947	20	3.6	20	75	7	65	34	15	20	29	1.93
11923921--11923960	20	2.0	20	85	0	53	47	17	7	27	1.74
11927137--11927168	16	1.9	17	93	6	57	53	3	6	37	1.42
11927856--11927881	12	2.2	12	100	0	52	42	15	7	34	1.75
11952201--11952319	37	3.2	37	73	10	109	28	10	25	35	1.90
11952307--11952393	37	2.3	38	82	5	106	22	14	29	32	1.94
11959471--11959534	25	2.6	26	80	7	71	65	1	31	1	1.11
11960071--11960105	6	5.8	6	96	0	61	37	0	14	48	1.44
11965905--11965938	15	2.4	14	90	5	50	38	0	0	61	0.96
11981924--11981968	6	7.8	6	83	11	51	0	17	0	82	0.68
11981925--11981968	22	2.0	23	86	4	63	0	18	0	81	0.68
11983006--11983054	24	2.0	25	84	11	66	0	32	2	65	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12005407--12005439	17	1.9	17	100	0	66	57	12	12	18	1.64
12012705--12012763	30	1.9	31	93	3	102	33	16	28	20	1.95
12014495--12014532	14	2.7	15	88	11	55	13	18	2	65	1.37
12016779--12016815	17	2.2	17	90	0	56	21	16	8	54	1.68
12016792--12016837	17	2.7	17	80	12	51	23	10	10	54	1.67
12017401--12017443	10	4.3	10	85	8	61	81	0	18	0	0.69
12032351--12033161	77	10.2	83	76	9	540	46	10	11	30	1.75
12032638--12033161	84	6.5	83	76	11	405	46	10	12	29	1.75
12032512--12033161	317	2.0	319	85	2	885	46	10	12	30	1.75
12032575--12033161	161	3.7	159	77	10	593	47	10	12	29	1.75
12033291--12033430	53	2.7	52	79	7	128	52	10	3	34	1.52
12033328--12033445	52	2.2	53	80	7	134	54	8	2	34	1.45
12036294--12036804	218	2.4	218	92	1	839	37	15	12	34	1.86
12037032--12037134	51	2.0	51	100	0	206	29	17	23	30	1.97
12037083--12037516	218	2.0	218	96	0	805	34	16	13	35	1.88
12050473--12050508	19	2.0	19	89	10	58	61	11	11	16	1.57
12051457--12051509	20	2.7	20	80	14	56	28	26	11	33	1.91
12053029--12053163	27	5.0	27	71	3	92	40	32	14	12	1.83
12055380--12055630	52	4.8	52	88	1	333	31	25	14	27	1.95
12060298--12060718	23	18.3	23	85	2	551	34	6	14	45	1.70
12060788--12060900	36	3.1	36	80	8	140	29	12	23	34	1.92
12066682--12066725	18	2.4	18	81	7	54	40	20	18	20	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12073103--12073142	16	2.5	17	84	12	57	65	10	25	0	1.24
12090933--12091346	29	14.2	28	72	14	155	32	4	26	36	1.76
12090953--12091346	30	13.5	29	74	13	246	33	3	26	36	1.75
12090949--12091346	59	6.8	59	79	12	357	33	3	27	35	1.75
12090948--12091327	89	4.3	88	77	13	283	32	3	27	35	1.75
12091247--12091359	29	3.9	28	79	5	102	35	2	26	35	1.71
12092476--12092509	3	11.0	3	87	6	50	38	0	0	61	0.96
12093247--12093288	18	2.4	18	84	4	59	52	0	4	42	1.22
12100156--12100846	138	5.0	139	83	4	821	45	6	8	39	1.60
12103874--12103918	18	2.8	16	86	10	56	0	24	2	73	0.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143