genome.fa.s11.2.7.7.80.10.50.1000.25.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032255.1 Gossypioides kirkii chromosome KI_13
Parameters: 2 7 7 80 10 50 1000
Length:  42971368

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   

This is table  25  of  143  ( 17057 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7455740--7456136	59	6.7	59	78	9	312	35	23	4	36	1.74
7456120--7456181	27	2.3	27	83	13	74	33	32	11	22	1.90
7456120--7456182	28	2.3	28	81	8	76	34	31	11	22	1.89
7463514--7463543	7	4.3	7	91	0	51	40	30	0	30	1.57
7464738--7464777	12	3.2	12	82	3	53	25	22	25	27	2.00
7467266--7467600	110	3.0	108	88	4	472	50	15	11	22	1.76
7479635--7479790	73	2.1	73	96	0	285	33	14	16	36	1.88
7481271--7481304	17	2.0	17	88	0	50	29	2	11	55	1.50
7482935--7482979	6	7.8	6	80	9	58	42	2	0	55	1.12
7482935--7482978	17	2.6	17	96	0	79	40	2	0	56	1.11
7484796--7484927	30	4.4	29	84	5	149	39	19	2	38	1.65
7484796--7484970	89	2.0	88	82	10	214	37	22	2	37	1.67
7484934--7485374	59	7.5	60	90	4	650	32	29	2	34	1.73
7484885--7485375	118	4.2	118	89	3	672	32	29	2	34	1.72
7484885--7485369	176	2.7	176	89	3	699	33	28	2	35	1.72
7491984--7492015	16	1.9	17	93	6	57	71	0	0	28	0.86
7492067--7492121	17	3.3	17	78	14	53	70	0	5	23	1.07
7492099--7492124	10	2.6	10	100	0	52	73	0	7	19	1.07
7492128--7492192	29	2.3	29	89	2	96	32	3	4	60	1.33
7493816--7493841	2	13.0	2	100	0	52	50	0	0	50	1.00
7495081--7495110	4	7.5	4	100	0	60	26	0	23	50	1.50
7495414--7495454	21	2.0	21	85	9	57	24	21	29	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7496676--7496741	29	2.2	29	78	5	69	31	7	13	46	1.71
7507378--7507405	7	4.0	7	100	0	56	71	0	0	28	0.86
7507631--7507678	24	2.0	25	87	4	71	39	6	0	54	1.26
7514893--7514957	31	2.1	31	91	0	103	36	6	7	49	1.57
7516747--7516845	30	3.3	30	81	5	83	35	6	25	33	1.81
7516766--7516893	31	4.3	30	83	12	147	38	3	18	39	1.67
7516767--7516893	30	4.2	28	81	10	119	38	3	18	40	1.66
7518301--7518402	45	2.3	45	89	3	152	26	18	17	37	1.93
7518481--7518604	50	2.5	50	81	0	131	24	27	16	32	1.96
7518657--7518785	39	3.3	40	83	6	165	28	18	23	29	1.98
7518840--7518984	50	2.9	50	81	6	150	23	23	18	34	1.96
7530681--7530849	29	5.7	29	85	10	209	36	2	19	41	1.65
7530681--7530849	60	2.9	57	83	10	214	36	2	19	41	1.65
7531776--7531808	10	3.3	10	95	0	57	75	0	0	24	0.80
7535869--7536054	30	6.2	30	78	6	180	37	4	20	37	1.75
7535913--7536054	29	4.8	28	83	10	151	37	2	20	40	1.64
7536975--7537007	10	3.3	10	95	0	57	75	0	0	24	0.80
7540098--7540148	26	1.9	27	84	4	68	35	3	19	41	1.70
7543536--7543641	30	3.4	29	75	13	86	52	1	1	43	1.23
7547397--7547437	21	2.0	20	85	9	55	43	4	2	48	1.37
7547483--7547524	20	2.1	20	86	8	59	54	2	4	38	1.34
7549182--7549215	17	2.1	15	89	10	50	32	11	0	55	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7549651--7549687	12	3.0	13	84	7	51	45	10	16	27	1.80
7556930--7556958	9	3.0	10	90	10	51	20	17	0	62	1.33
7561411--7561568	77	2.1	77	87	2	228	25	29	15	29	1.96
7564420--7564450	15	2.0	16	93	6	55	38	3	0	58	1.15
7564564--7564601	18	2.1	18	85	9	51	42	15	5	36	1.70
7570410--7570458	17	2.9	17	81	0	62	67	0	4	28	1.09
7570419--7570480	19	3.0	22	73	26	64	64	0	8	27	1.21
7571866--7571920	2	27.5	2	100	0	110	50	0	0	49	1.00
7572696--7572799	11	10.7	10	72	20	53	39	1	0	57	1.16
7572780--7572835	19	3.1	18	73	19	53	39	7	0	53	1.28
7572965--7573013	20	2.5	20	82	0	62	26	6	4	63	1.36
7574637--7574756	39	3.1	39	82	0	141	40	16	18	25	1.91
7580938--7581068	67	2.0	67	87	0	190	34	19	25	21	1.96
7581413--7581517	39	2.7	39	75	5	104	40	20	16	23	1.91
7584444--7584485	12	3.6	12	77	6	50	40	21	14	23	1.90
7584439--7584508	23	3.0	23	82	2	86	44	18	10	27	1.81
7584446--7584508	24	2.7	23	82	2	72	46	19	9	25	1.80
7584545--7584577	4	8.2	4	100	0	66	51	24	0	24	1.48
7584931--7584998	24	2.9	23	78	8	75	47	0	1	51	1.09
7584928--7585067	61	2.3	62	91	3	221	46	1	1	50	1.19
7584947--7585030	26	3.2	26	74	14	66	44	0	1	54	1.07
7587857--7587881	6	4.2	6	100	0	50	16	0	0	84	0.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7615815--7615861	18	2.8	17	75	9	51	42	0	4	53	1.20
7615824--7615871	20	2.3	20	79	10	53	43	0	2	54	1.12
7616030--7616069	21	1.9	21	84	0	53	32	5	5	57	1.42
7616108--7616134	14	1.9	14	100	0	54	51	0	3	44	1.19
7624498--7624575	29	2.7	29	82	9	79	56	6	3	33	1.43
7636872--7636914	18	2.4	18	100	0	86	34	13	32	18	1.90
7640321--7640374	27	2.0	27	100	0	108	37	14	14	33	1.88
7642390--7642452	9	7.1	9	75	15	60	38	0	1	60	1.07
7642398--7642451	8	6.4	8	80	16	56	38	0	0	61	0.96
7642453--7642495	21	2.1	21	86	4	61	46	0	0	53	1.00
7642460--7642500	10	4.0	10	87	6	64	34	0	0	65	0.93
7642732--7642765	3	11.3	3	87	0	50	32	2	2	61	1.26
7647329--7647393	26	2.6	25	85	4	78	58	35	1	4	1.28
7648709--7648994	96	3.0	96	91	1	475	28	19	14	37	1.92
7662007--7662045	14	2.5	15	84	15	53	35	2	0	61	1.10
7662677--7662731	27	2.0	28	82	6	69	38	0	7	54	1.28
7663105--7663147	2	21.5	2	100	0	86	51	0	0	48	1.00
7677004--7677065	31	2.0	31	87	6	90	41	4	14	38	1.67
7677004--7677074	31	2.3	30	83	7	88	42	7	14	36	1.72
7680420--7680452	15	2.1	16	88	5	50	45	0	0	54	0.99
7680524--7680614	40	2.2	41	83	7	114	54	6	2	36	1.39
7682222--7682292	31	2.3	31	85	7	92	46	21	11	21	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7691043--7691093	2	25.5	2	100	0	102	50	0	0	49	1.00
7692502--7692824	84	4.0	81	74	13	252	31	12	11	44	1.78
7694922--7694991	29	2.4	29	87	0	104	30	24	22	22	1.99
7694922--7695011	29	3.1	29	79	7	101	28	21	26	23	1.99
7699646--7699698	24	2.2	25	83	16	67	64	13	11	11	1.51
7704509--7704549	13	3.2	13	89	0	64	34	7	24	34	1.83
7704509--7704567	26	2.2	26	87	3	82	33	5	25	35	1.78
7704512--7704565	13	4.2	13	80	0	54	33	5	25	35	1.80
7707415--7707440	13	2.0	13	100	0	52	61	0	0	38	0.96
7707989--7708045	23	2.5	22	82	5	69	71	21	1	5	1.14
7708002--7708071	32	2.2	33	84	7	90	68	21	4	5	1.28
7709831--7709886	21	2.5	22	83	11	71	39	0	3	57	1.16
7721977--7722036	30	2.0	30	93	0	102	33	13	20	33	1.91
7725869--7725906	16	2.4	16	90	0	58	28	28	18	23	1.98
7731959--7731997	15	2.6	16	84	12	55	28	7	2	61	1.37
7735849--7735952	48	2.1	49	85	1	138	32	0	28	37	1.64
7735907--7736199	30	9.9	30	80	5	222	38	3	24	34	1.72
7739773--7739808	17	2.1	18	94	5	65	22	16	0	61	1.35
7744679--7744709	14	2.1	15	94	5	55	45	6	0	48	1.28
7744805--7744842	17	2.2	18	86	13	53	52	0	7	39	1.31
7745132--7745161	14	2.1	14	100	0	60	53	0	6	40	1.27
7753898--7753965	27	2.4	29	78	7	79	52	5	5	35	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7763430--7763498	27	2.6	27	97	0	129	18	21	18	40	1.91
7764016--7764074	29	2.0	29	90	6	93	15	15	10	59	1.61
7764194--7764275	30	2.8	29	81	7	78	28	9	1	60	1.35
7764351--7764415	30	2.2	30	81	10	71	24	4	15	55	1.59
7764444--7764596	5	30.8	5	67	25	60	22	3	17	56	1.55
7764399--7764570	9	18.4	9	72	14	102	25	4	16	54	1.60
7764402--7764535	12	10.5	13	70	21	79	26	3	16	53	1.59
7764562--7764608	17	2.7	18	74	9	53	12	2	23	61	1.42
7772383--7772670	106	2.8	101	83	8	375	34	16	22	27	1.95
7775162--7775188	3	9.0	3	100	0	54	66	0	33	0	0.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143