genome.fa.s11.2.7.7.80.10.50.1000.45.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032255.1 Gossypioides kirkii chromosome KI_13
Parameters: 2 7 7 80 10 50 1000
Length:  42971368

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   

This is table  45  of  143  ( 17057 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14204652--14204688	17	2.2	17	95	0	65	37	2	5	54	1.38
14204625--14204690	6	11.7	6	76	12	50	39	1	3	56	1.24
14206148--14206399	30	8.4	30	91	0	405	39	22	1	36	1.62
14206148--14206516	60	6.2	57	88	6	352	36	24	2	37	1.70
14206148--14206430	90	3.1	88	90	3	406	38	22	2	36	1.67
14206201--14206576	30	12.8	28	76	15	146	34	24	4	36	1.75
14206387--14206575	59	3.2	57	78	8	166	31	25	6	36	1.81
14207984--14208092	34	3.4	34	73	12	111	49	8	0	41	1.39
14208071--14208162	20	4.8	19	70	12	73	44	7	0	47	1.31
14208042--14208194	46	3.1	45	76	15	126	48	9	0	41	1.40
14208116--14208141	13	2.0	13	100	0	52	46	7	0	46	1.31
14207985--14208282	165	1.8	160	83	8	395	48	10	0	40	1.42
14208225--14208269	20	2.4	18	92	7	72	42	0	0	57	0.98
14214312--14214612	43	7.0	43	82	3	347	23	17	29	29	1.97
14214312--14214612	129	2.3	128	87	1	424	23	17	29	29	1.97
14217188--14217217	13	2.3	13	94	0	51	36	10	13	40	1.78
14218596--14218734	49	2.7	50	81	10	158	37	1	6	54	1.35
14218878--14218906	15	2.0	15	93	6	51	68	0	0	31	0.89
14219179--14219229	22	2.3	23	89	3	77	37	7	3	50	1.50
14229118--14229154	19	1.9	19	94	0	65	13	40	0	45	1.43
14231000--14231059	30	2.0	29	93	3	102	26	16	26	30	1.97
14240699--14240741	17	2.5	17	88	0	59	16	11	16	55	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14240710--14240768	17	3.5	17	82	13	61	15	10	18	55	1.67
14242890--14242939	24	2.1	23	85	10	66	32	12	8	48	1.69
14244903--14245019	50	2.4	49	87	5	157	35	1	6	56	1.36
14244903--14245067	53	3.3	50	82	7	158	32	3	8	55	1.45
14245352--14245486	73	1.9	73	82	4	175	27	11	11	49	1.73
14245466--14245875	85	5.1	79	79	10	395	33	11	12	43	1.78
14245461--14245794	85	4.1	85	83	7	406	31	11	12	44	1.78
14245467--14245794	163	2.0	164	85	5	439	31	11	13	43	1.79
14247369--14247489	30	4.1	30	78	2	145	28	19	27	24	1.98
14247373--14247488	59	2.0	60	89	5	182	30	17	28	24	1.97
14248477--14248516	21	2.0	20	85	5	53	27	15	15	42	1.86
14254466--14254530	22	3.0	22	95	0	121	32	24	18	24	1.97
14256214--14256256	12	3.6	12	83	0	59	62	2	34	0	1.08
14256688--14256734	17	2.8	17	78	15	53	14	23	12	48	1.78
14257535--14257574	21	2.0	20	85	5	53	27	15	12	45	1.82
14298368--14298392	13	1.9	13	100	0	50	24	16	12	48	1.79
14308419--14308465	24	2.0	24	83	8	60	59	2	38	0	1.09
14314932--14315078	45	3.2	45	65	22	115	51	8	15	23	1.71
14314894--14315079	93	2.0	93	96	0	345	50	9	16	24	1.73
14329367--14331225	984	1.9	984	85	2	2559	29	15	17	37	1.90
14345526--14345568	18	2.4	19	85	11	56	23	13	6	55	1.62
14352822--14352861	21	1.9	21	89	0	62	25	10	22	42	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14353530--14353572	16	2.7	16	85	0	59	67	0	11	20	1.22
14356557--14356594	17	2.2	19	86	13	55	26	0	10	63	1.27
14378703--14378970	134	2.0	133	96	0	491	35	17	22	25	1.95
14396408--14396452	16	2.9	15	84	15	56	75	0	22	2	0.91
14397977--14398006	14	2.2	14	94	5	53	30	23	10	36	1.87
14404925--14404963	18	2.2	18	85	0	51	23	10	12	53	1.69
14406768--14406811	5	8.8	5	82	0	52	77	2	13	6	1.07
14408067--14408109	17	2.5	17	88	0	68	44	13	11	30	1.80
14413211--14413249	15	2.7	15	88	11	55	0	23	0	76	0.78
14413835--14413868	18	1.9	18	88	5	52	61	5	14	17	1.52
14414277--14414333	24	2.4	24	85	5	71	3	40	0	56	1.17
14426683--14426731	17	3.0	16	82	11	55	73	10	2	14	1.18
14431773--14431806	17	1.9	17	88	5	50	2	8	5	82	0.93
14435551--14435599	12	3.4	15	72	18	50	67	10	2	20	1.30
14436004--14436116	15	7.5	15	69	4	66	23	23	27	24	2.00
14438402--14438451	21	2.4	20	83	9	64	76	0	16	8	1.02
14440913--14440994	15	5.5	15	71	0	56	28	24	24	23	2.00
14441130--14441173	18	2.4	18	76	0	52	25	29	11	34	1.91
14441130--14441181	18	2.9	17	77	5	50	26	30	11	30	1.92
14444280--14444362	22	3.8	22	88	0	130	39	15	8	36	1.78
14444280--14444363	44	1.9	44	97	0	159	39	15	8	36	1.78
14445643--14445801	75	2.1	75	96	2	295	44	12	11	31	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14447726--14447795	33	2.1	33	97	0	131	47	12	12	27	1.78
14448588--14448624	17	2.2	17	100	0	74	51	5	18	24	1.67
14448595--14448634	17	2.4	17	86	0	53	57	10	15	17	1.64
14455550--14455794	82	2.9	84	82	4	298	40	11	18	28	1.86
14457762--14457803	16	2.6	16	88	0	57	19	11	0	69	1.19
14461494--14461520	14	1.9	14	100	0	54	22	22	7	48	1.75
14469635--14469673	16	2.5	16	87	4	53	69	0	12	17	1.19
14470650--14470880	89	2.5	88	83	6	259	38	20	8	32	1.83
14470965--14471011	22	2.1	22	84	7	60	70	0	8	21	1.14
14470939--14471011	21	3.6	19	78	12	65	65	0	6	27	1.17
14471027--14471110	18	4.3	20	67	20	61	61	2	5	29	1.32
14470992--14471114	28	4.3	26	69	15	75	62	2	6	28	1.33
14470939--14471140	10	20.7	10	66	14	59	62	1	5	29	1.29
14471494--14471711	90	2.4	90	85	3	280	27	10	20	41	1.84
14471857--14471907	18	2.9	17	80	8	59	29	9	1	58	1.41
14471876--14471923	15	3.1	15	88	11	62	31	6	0	62	1.20
14472033--14472118	33	2.7	33	79	13	99	55	2	9	32	1.44
14472033--14472131	32	3.1	30	75	17	92	55	2	10	32	1.45
14482420--14482455	18	1.9	19	88	5	56	36	11	11	41	1.76
14484633--14484663	5	6.2	5	92	0	53	80	0	16	3	0.83
14489970--14490542	286	2.0	287	93	0	977	31	15	19	33	1.93
14491064--14491115	21	2.5	21	75	6	52	30	13	25	30	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14506442--14506475	2	17.0	2	100	0	68	50	0	0	50	1.00
14507499--14507704	99	2.1	99	93	0	351	51	15	10	22	1.72
14510778--14510838	32	1.9	32	83	9	81	31	4	19	44	1.72
14510796--14510838	16	2.7	16	100	0	86	32	6	16	44	1.74
14513675--14513802	30	4.2	29	72	11	96	47	3	3	45	1.37
14513675--14513802	60	2.1	61	89	1	195	47	3	3	45	1.37
14516881--14516947	28	2.4	28	84	0	89	41	25	14	17	1.88
14517140--14517190	26	2.0	26	88	0	75	27	25	23	23	2.00
14517170--14517253	25	3.3	25	83	1	105	29	25	17	27	1.98
14517813--14517838	11	2.4	11	100	0	52	50	19	7	23	1.73
14520072--14520142	33	2.1	33	82	12	83	64	0	0	35	0.94
14521600--14521652	16	3.2	16	74	10	54	20	20	26	32	1.98
14524603--14524657	19	2.8	20	76	10	51	54	5	5	34	1.46
14525153--14525190	19	1.9	19	89	5	58	52	2	0	44	1.14
14529516--14529603	21	4.2	21	72	5	79	31	23	5	38	1.78
14529516--14529603	42	2.1	42	89	4	133	31	23	5	38	1.78
14531899--14531941	20	2.2	19	84	12	52	32	11	9	46	1.72
14532533--14532588	27	2.1	26	83	9	69	66	1	3	28	1.19
14538937--14539014	27	2.9	27	86	3	104	16	28	33	21	1.95
14543239--14543288	26	1.9	26	87	0	73	30	0	12	58	1.34
14543354--14543388	6	5.8	6	100	0	70	65	17	0	17	1.27
14543823--14543847	6	4.2	6	100	0	50	16	32	36	16	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14545395--14545440	21	2.2	21	96	0	83	39	15	13	32	1.85
14546612--14546644	17	1.9	17	93	0	57	54	3	0	42	1.15
14547080--14547113	15	2.3	15	89	0	50	44	0	0	55	0.99
14561156--14561199	4	10.8	4	86	13	63	70	0	29	0	0.88
14561141--14561212	31	2.3	31	90	9	112	65	0	34	0	0.93
14561145--14561208	25	2.6	25	87	5	94	68	0	31	0	0.90
14561148--14561220	25	3.0	24	80	9	87	67	0	32	0	0.91
14561374--14561420	21	2.2	21	100	0	94	65	4	21	8	1.37
14561480--14561534	24	2.2	24	84	9	67	18	0	9	72	1.10
14562980--14563035	28	2.0	28	89	0	85	23	7	25	44	1.78

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143