genome.fa.s11.2.7.7.80.10.50.1000.105.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032255.1 Gossypioides kirkii chromosome KI_13
Parameters: 2 7 7 80 10 50 1000
Length:  42971368

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   

This is table  105  of  143  ( 17057 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32157933--32158152	66	3.2	66	70	19	175	38	3	10	47	1.55
32158028--32158084	18	3.1	18	80	12	71	42	0	10	47	1.38
32158248--32158285	20	1.9	20	88	0	58	39	0	7	52	1.31
32157932--32158334	129	3.0	133	84	11	529	38	3	10	47	1.55
32158887--32158926	16	2.5	16	88	8	55	20	2	5	72	1.15
32160863--32160891	15	1.9	15	100	0	58	0	55	31	13	1.39
32170353--32170377	7	3.6	7	100	0	50	12	0	0	88	0.53
32170633--32170694	20	3.4	19	70	21	60	45	3	1	50	1.27
32170625--32170694	35	2.0	35	97	0	131	45	5	1	47	1.35
32179740--32179796	27	2.1	28	86	3	80	57	1	1	38	1.19
32183674--32183732	31	1.9	31	83	10	77	47	8	15	28	1.74
32184299--32184334	15	2.3	16	90	4	56	44	0	0	55	0.99
32188305--32188338	15	2.1	17	89	10	54	64	0	0	35	0.94
32188204--32188358	82	1.9	82	81	11	192	49	3	1	44	1.31
32194432--32194466	14	2.5	14	95	0	61	34	17	31	17	1.93
32203041--32203075	12	3.0	12	87	4	54	5	17	14	62	1.49
32205501--32205566	13	5.1	13	76	7	71	33	6	22	37	1.79
32214816--32214885	31	2.3	31	92	2	115	60	0	0	40	0.97
32215293--32215319	1	27.0	1	100	0	54	0	100	0	0	0.00
32229912--32229953	22	1.9	22	85	9	59	45	4	2	47	1.36
32231038--32231084	20	2.3	20	85	0	58	36	23	17	23	1.95
32231065--32231256	27	7.1	27	87	0	258	34	23	16	25	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32234926--32234967	21	2.0	21	90	0	66	38	7	16	38	1.76
32239442--32239487	25	1.9	23	86	8	65	34	4	4	56	1.39
32245221--32245804	291	2.0	292	98	0	1125	35	10	21	32	1.87
32250625--32250665	22	1.9	22	85	14	59	68	7	12	12	1.39
32253373--32253402	2	15.0	2	92	0	51	53	0	0	46	1.00
32253402--32253430	2	14.5	2	100	0	58	51	0	48	0	1.00
32255975--32256008	4	8.8	4	93	6	61	0	0	23	76	0.79
32261281--32261336	20	2.9	20	73	23	57	53	0	0	46	1.00
32261555--32261634	17	4.6	17	82	10	90	38	0	3	57	1.17
32261555--32261654	11	8.5	11	75	13	58	40	0	5	55	1.22
32261566--32261654	6	15.0	6	74	6	74	41	0	4	53	1.21
32263373--32263449	29	2.7	28	80	13	77	36	24	5	33	1.78
32263394--32263483	29	3.1	30	79	12	98	31	27	6	34	1.83
32271384--32271428	2	22.5	2	86	0	63	42	0	4	53	1.21
32278591--32278632	16	2.6	17	81	7	52	57	4	0	38	1.20
32278659--32278706	14	3.1	14	73	21	51	41	4	2	52	1.32
32279156--32279218	13	4.8	13	86	0	81	34	3	19	42	1.67
32281081--32281264	97	1.9	97	85	2	253	27	10	8	53	1.64
32282925--32282964	21	1.9	21	89	0	62	30	12	0	57	1.36
32284229--32284274	4	11.2	4	78	21	51	23	4	0	71	1.03
32294019--32294044	5	5.2	5	100	0	52	19	42	19	19	1.90
32295991--32296077	9	10.3	9	70	27	59	52	0	0	47	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32295987--32296072	20	4.4	18	71	23	59	52	0	0	47	1.00
32295987--32296072	29	2.9	30	83	10	106	52	0	0	47	1.00
32296116--32296163	7	7.1	7	86	6	55	2	66	0	31	1.03
32296116--32296163	13	3.6	13	83	5	60	2	66	0	31	1.03
32296772--32296813	20	2.0	21	90	4	68	47	0	52	0	1.00
32300942--32300979	7	5.4	7	90	0	58	31	18	0	50	1.47
32300936--32300987	14	3.7	14	86	0	68	30	21	0	48	1.51
32317277--32317352	6	12.7	6	98	0	143	35	34	14	15	1.88
32321160--32321211	23	2.3	22	75	12	52	48	0	9	42	1.36
32322854--32322885	12	2.7	12	100	0	64	78	0	6	15	0.95
32326149--32326475	164	2.0	162	90	1	510	39	9	13	37	1.77
32333928--32333980	6	9.3	6	75	19	51	41	1	0	56	1.10
32333909--32333977	29	2.4	28	82	4	75	39	1	2	56	1.23
32333936--32333980	17	2.6	18	89	3	65	42	2	0	55	1.12
32335803--32336291	30	16.4	30	80	6	496	38	22	2	36	1.69
32335798--32336291	89	5.5	90	86	4	579	38	22	3	36	1.70
32335798--32336291	59	8.3	59	83	6	534	38	22	3	36	1.70
32348055--32348663	68	9.0	68	95	0	1083	33	15	20	30	1.94
32348603--32348744	78	1.9	75	86	4	203	33	14	20	31	1.93
32349044--32349096	6	9.3	6	75	19	51	41	1	0	56	1.10
32349025--32349093	29	2.4	28	82	4	75	39	1	2	56	1.23
32349052--32349096	17	2.6	18	89	3	65	42	2	0	55	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32350940--32351430	30	16.4	30	83	2	470	37	22	2	37	1.69
32350940--32351418	60	8.0	60	84	4	520	37	22	2	36	1.69
32350940--32351401	90	5.1	90	86	3	608	38	21	3	36	1.69
32351374--32351432	29	1.9	30	86	10	84	32	28	1	37	1.67
32359081--32359144	12	5.5	12	70	7	60	23	14	20	42	1.88
32359081--32359168	23	3.8	23	90	3	133	27	12	19	40	1.87
32368859--32368894	2	18.0	2	100	0	72	50	0	0	50	1.00
32369093--32369143	25	2.0	25	96	0	93	60	3	17	17	1.50
32380399--32380582	59	3.1	59	93	0	314	33	3	31	32	1.74
32380399--32380560	30	5.5	31	73	14	162	33	3	29	33	1.75
32380358--32380582	118	1.9	118	87	1	335	32	5	32	29	1.81
32380423--32380579	30	5.3	29	73	17	144	32	3	33	31	1.74
32382471--32382554	5	15.6	5	75	18	71	55	2	1	40	1.20
32382454--32382552	11	8.9	11	76	17	89	56	3	1	39	1.21
32382497--32382566	17	4.3	15	78	10	68	57	1	1	40	1.17
32382959--32383086	38	3.4	38	70	20	113	31	18	14	35	1.92
32382915--32383667	76	10.0	76	90	4	1163	32	18	15	33	1.92
32382915--32383667	222	3.4	222	92	1	1220	32	18	15	33	1.92
32389911--32390432	30	17.5	29	80	6	485	35	2	22	38	1.69
32389922--32390432	90	5.7	90	85	4	617	36	2	22	38	1.69
32392326--32392386	17	3.4	17	79	6	68	47	3	1	47	1.28
32392326--32392400	6	12.5	6	69	10	55	48	5	1	45	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32392735--32393306	38	15.3	37	66	17	254	33	17	14	34	1.90
32392686--32393306	76	8.3	76	87	5	890	33	17	14	34	1.90
32392686--32393306	224	2.8	222	92	2	1012	33	17	14	34	1.90
32393257--32393355	49	2.0	49	96	0	180	32	16	13	38	1.87
32393306--32393416	38	2.9	36	74	12	107	35	15	15	34	1.89
32395206--32395260	10	5.8	10	75	18	55	1	16	0	81	0.77
32395205--32395273	18	3.9	17	78	14	68	2	14	1	81	0.88
32395205--32395283	28	2.7	30	82	9	92	3	15	2	78	1.00
32395211--32395264	16	3.2	16	84	7	54	3	14	0	81	0.82
32395202--32395250	10	4.8	10	84	2	62	2	14	0	83	0.73
32396088--32396128	22	1.9	21	85	5	55	2	19	0	78	0.87
32400349--32400859	30	17.0	30	81	6	518	35	3	22	37	1.73
32400349--32400859	90	5.7	91	84	5	594	35	3	22	37	1.73
32402721--32402814	6	15.8	6	72	10	77	50	4	1	44	1.28
32402721--32402797	11	7.1	11	70	15	54	49	2	1	46	1.23
32402721--32402814	17	5.6	17	79	11	97	50	4	1	44	1.28
32409126--32409202	29	2.6	29	75	17	79	33	2	29	33	1.72
32409126--32409232	29	3.7	30	72	17	66	33	3	27	35	1.75
32410447--32410521	3	24.3	3	74	5	60	36	2	4	57	1.32
32411210--32411276	11	6.0	11	83	10	75	56	2	0	40	1.14
32411210--32411278	5	12.6	5	78	17	66	55	2	0	42	1.15
32411217--32411283	17	4.0	16	84	7	71	55	4	0	40	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32411210--32411276	28	2.4	28	92	0	107	56	2	0	40	1.14
32413976--32414015	3	13.3	3	100	0	80	35	0	0	65	0.93
32424844--32424908	30	2.2	30	91	0	103	60	12	4	23	1.51
32427022--32427061	20	2.0	20	100	0	80	25	25	30	20	1.99
32448654--32448823	90	1.9	90	98	0	331	18	31	5	44	1.72
32449337--32449435	50	2.0	50	100	0	198	34	27	8	30	1.86
32455405--32455438	2	17.0	2	100	0	68	0	50	0	50	1.00
32458827--32459047	68	3.3	67	77	5	187	35	10	25	28	1.89
32458868--32459059	67	2.8	67	76	3	188	37	10	25	26	1.89
32460509--32460687	52	3.5	52	89	2	272	25	15	24	34	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143