genome.fa.s11.2.7.7.80.10.50.1000.63.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032255.1 Gossypioides kirkii chromosome KI_13
Parameters: 2 7 7 80 10 50 1000
Length:  42971368

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   

This is table  63  of  143  ( 17057 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20411150--20411212	24	2.6	24	87	0	90	49	11	14	25	1.76
20416683--20416741	19	3.1	19	85	0	64	38	23	20	16	1.92
20432626--20432662	18	1.9	18	89	10	56	43	0	0	56	0.99
20432631--20432672	15	2.7	16	77	7	50	50	0	0	50	1.00
20432865--20432903	17	2.4	17	95	4	71	33	0	53	12	1.39
20433103--20433136	17	2.0	17	94	0	59	44	0	2	52	1.16
20433259--20433342	27	3.3	27	68	17	79	42	2	2	52	1.27
20433704--20433754	26	2.1	25	82	17	63	43	1	1	52	1.23
20433790--20433847	31	1.9	29	89	6	89	50	5	0	44	1.24
20435446--20435472	6	4.5	6	100	0	54	14	37	33	14	1.88
20436000--20436084	26	3.2	26	77	3	71	54	10	1	34	1.43
20436034--20436074	22	1.9	21	85	5	55	51	14	0	34	1.43
20440284--20440364	27	3.0	27	92	0	126	19	30	32	17	1.95
20449222--20449276	21	2.6	21	85	0	74	23	12	27	36	1.91
20450485--20450568	29	2.9	29	90	0	132	22	26	29	21	1.99
20455474--20455547	28	2.5	30	82	6	98	18	21	16	43	1.88
20455474--20455555	31	2.8	29	78	9	87	19	21	18	40	1.92
20457328--20457363	16	2.2	16	90	0	54	19	0	36	44	1.51
20460464--20460729	132	2.0	132	100	0	532	37	20	9	31	1.85
20462030--20462065	16	2.2	16	95	0	63	19	0	38	41	1.52
20463489--20463589	30	3.4	30	84	0	94	38	19	19	21	1.93
20463768--20463869	30	3.5	30	73	14	95	42	26	11	19	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20463996--20464136	55	2.6	55	84	4	160	24	26	17	31	1.97
20467872--20467909	17	2.2	18	86	13	53	42	0	2	55	1.14
20472375--20472426	22	2.4	22	90	0	77	19	21	9	50	1.76
20473390--20473459	18	3.7	20	76	19	62	40	1	1	57	1.17
20473404--20473462	20	3.1	18	76	16	57	38	1	0	59	1.08
20478278--20478450	91	1.9	90	91	1	283	35	27	15	21	1.94
20483210--20483345	69	2.0	69	88	5	204	50	5	4	39	1.47
20486937--20486981	17	2.6	17	85	0	63	51	11	17	20	1.75
20496467--20496505	16	2.4	17	91	4	62	23	7	15	53	1.67
20497036--20497068	14	2.3	15	94	5	59	81	0	18	0	0.68
20497033--20497070	14	2.8	14	81	18	53	81	0	18	0	0.69
20501457--20501516	31	1.9	31	86	6	86	38	18	6	36	1.77
20504198--20504257	21	2.8	22	87	5	88	31	11	18	38	1.87
20508920--20509334	209	2.0	209	96	0	758	32	15	23	28	1.95
20510072--20510096	8	3.1	8	100	0	50	64	0	0	36	0.94
20511880--20511970	25	3.6	25	87	0	119	25	18	26	29	1.98
20521236--20521333	25	3.9	25	87	1	124	26	17	23	32	1.96
20521236--20521353	25	4.7	26	87	3	82	27	16	23	32	1.96
20525989--20526135	58	2.6	57	78	8	174	55	9	9	25	1.62
20528466--20528500	16	2.2	16	89	0	52	80	0	5	14	0.89
20530394--20531016	42	15.6	42	76	10	524	26	16	26	30	1.96
20530411--20531009	38	15.1	38	74	10	400	26	16	26	30	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20530394--20530980	157	3.7	155	80	8	585	26	16	26	30	1.96
20530394--20531005	80	7.7	81	78	10	568	26	16	26	30	1.96
20531144--20531454	49	6.4	49	77	3	241	21	25	16	37	1.93
20531168--20531423	97	2.6	98	75	7	259	20	26	14	37	1.92
20531144--20531448	146	2.1	147	79	4	330	20	25	16	37	1.93
20544178--20544281	52	2.0	52	98	0	199	37	21	20	21	1.94
20544936--20544981	10	4.3	11	86	8	60	78	0	21	0	0.76
20550242--20550287	10	4.3	11	91	8	69	0	19	0	80	0.71
20571812--20571855	23	2.0	22	86	4	61	38	0	15	45	1.47
20572057--20572368	159	2.0	159	99	0	615	34	23	11	30	1.90
20574044--20574220	28	6.3	28	73	5	97	35	20	15	28	1.94
20574317--20574395	28	2.8	28	88	0	104	39	27	11	21	1.88
20576671--20576772	40	2.5	41	87	7	156	12	31	26	29	1.93
20576671--20576773	20	5.2	20	80	0	134	12	31	26	30	1.93
20579165--20579214	25	2.0	25	96	0	91	28	12	26	34	1.92
20582435--20582724	79	3.7	79	85	2	404	20	19	26	33	1.97
20587518--20587609	20	4.7	20	82	8	100	17	29	21	31	1.96
20591611--20591652	22	2.0	21	86	13	59	42	11	9	35	1.74
20596460--20596521	28	2.2	28	85	5	81	43	12	12	30	1.81
20609625--20609739	21	5.5	21	94	0	194	32	13	24	29	1.94
20611440--20611495	28	2.0	28	100	0	112	32	21	7	39	1.80
20617360--20617824	238	2.0	238	89	0	725	41	15	7	35	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20618259--20618312	16	3.3	16	75	12	56	64	0	9	25	1.23
20618273--20618331	26	2.3	26	82	5	66	64	0	5	30	1.15
20618830--20619373	151	3.7	147	84	7	697	42	10	3	43	1.55
20619066--20619100	18	1.9	18	88	0	52	48	8	0	42	1.33
20618916--20619120	49	4.1	49	66	19	113	43	11	2	42	1.55
20619223--20619490	127	2.1	129	85	3	380	44	8	2	44	1.47
20620380--20620967	42	14.0	42	84	3	722	37	23	17	21	1.94
20622419--20622578	29	5.5	29	68	24	113	35	1	28	33	1.68
20622389--20622578	59	3.2	59	85	9	246	36	2	27	33	1.69
20622471--20622651	29	6.1	28	71	17	91	34	2	27	35	1.69
20622553--20622651	29	3.4	28	81	8	92	33	3	24	39	1.71
20624547--20624622	17	4.5	17	73	5	73	51	5	1	42	1.33
20624547--20624622	34	2.2	35	79	6	84	51	5	1	42	1.33
20624952--20625993	200	5.2	200	89	0	1548	21	22	19	36	1.95
20637529--20637854	59	5.6	59	82	6	389	35	2	27	33	1.72
20638238--20638291	28	1.9	28	100	0	108	46	31	7	14	1.73
20639657--20639715	28	2.1	28	81	6	66	45	6	1	45	1.40
20639852--20639892	21	2.0	21	85	0	55	2	9	4	82	0.89
20649674--20649743	7	10.9	7	71	17	53	34	27	22	15	1.95
20649681--20649727	11	4.0	11	82	15	58	29	25	25	19	1.98
20649674--20649729	25	2.2	25	90	0	94	30	26	25	17	1.97
20649754--20649816	11	5.7	11	72	7	56	28	28	23	19	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20656912--20657615	152	4.7	151	87	3	929	42	10	3	43	1.55
20656946--20657615	302	2.2	302	88	3	985	43	10	3	43	1.55
20669742--20669773	14	2.1	16	88	11	50	28	12	12	46	1.78
20672730--20672794	32	2.0	32	90	0	103	40	18	7	33	1.79
20676230--20676269	14	3.0	14	82	14	57	50	0	0	50	1.00
20680764--20680794	14	2.2	14	94	0	53	51	0	0	48	1.00
20682900--20683248	177	2.0	177	96	0	644	34	13	23	28	1.93
20686351--20686497	58	2.5	60	84	6	192	22	14	11	51	1.74
20686351--20686508	60	2.6	62	83	7	209	22	13	11	52	1.72
20687235--20687302	3	22.7	3	100	0	136	0	32	0	67	0.91
20687939--20687995	24	2.4	24	100	0	114	56	3	24	15	1.56
20690305--20690338	16	2.1	17	88	5	52	20	20	0	58	1.39
20693547--20693617	32	2.2	32	87	7	101	33	18	15	32	1.92
20698661--20698715	24	2.3	24	83	0	65	30	23	20	25	1.98
20698672--20698730	24	2.5	24	91	0	91	32	23	22	22	1.98
20698712--20698788	27	2.8	27	90	2	109	35	24	16	23	1.95
20700112--20700173	3	20.7	3	100	0	124	67	0	0	32	0.91
20704368--20704460	28	3.0	29	80	20	116	24	29	13	32	1.94
20708705--20709248	49	10.9	49	73	7	303	43	17	20	19	1.89
20709280--20709844	45	12.8	45	83	1	545	33	26	14	25	1.95
20709280--20709567	129	2.2	133	84	3	377	35	27	13	23	1.92
20710288--20710339	28	1.9	26	84	7	68	38	13	7	40	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20727991--20728048	30	1.9	30	83	13	75	43	6	12	37	1.69
20729496--20729537	12	3.5	12	90	0	66	38	2	28	30	1.70
20729917--20729950	3	11.7	3	93	6	61	29	0	0	70	0.87
20731146--20731383	51	4.6	51	81	8	261	29	23	15	31	1.95
20735184--20735239	16	3.5	16	82	4	69	41	5	21	32	1.76
20735397--20735567	59	2.9	60	81	11	208	54	2	1	41	1.23
20746225--20746270	19	2.4	19	100	0	92	39	19	21	19	1.93
20777080--20777123	21	2.0	22	86	8	63	45	2	9	43	1.48
20777327--20777389	18	3.4	18	82	2	81	31	15	23	28	1.96
20783030--20783128	40	2.5	40	93	0	171	23	20	17	39	1.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143