genome.fa.s11.2.7.7.80.10.50.1000.122.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032255.1 Gossypioides kirkii chromosome KI_13
Parameters: 2 7 7 80 10 50 1000
Length:  42971368

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   

This is table  122  of  143  ( 17057 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36306996--36307050	24	2.3	25	82	17	64	9	25	7	58	1.55
36321969--36322015	23	2.1	23	84	4	60	65	0	10	23	1.23
36328064--36328113	25	2.0	25	84	7	66	48	8	2	42	1.44
36333333--36333361	3	9.7	3	100	0	58	68	0	31	0	0.89
36336392--36336429	17	2.2	17	86	9	51	60	2	0	36	1.11
36337829--36337868	22	1.9	20	90	10	62	32	2	0	65	1.06
36337959--36338046	46	1.9	46	88	0	131	40	20	9	29	1.83
36339758--36339791	17	2.0	17	94	0	59	50	5	5	38	1.51
36350936--36350969	6	5.8	6	89	3	52	64	0	2	32	1.08
36353715--36353799	38	2.5	32	76	20	98	34	14	17	34	1.90
36372230--36372362	58	2.3	59	80	7	148	34	3	24	37	1.73
36372307--36372490	30	6.2	29	71	13	92	34	3	26	35	1.75
36372266--36372427	30	5.5	30	71	17	108	33	3	24	37	1.73
36372264--36372446	59	3.1	55	79	11	188	33	3	25	37	1.72
36372264--36372472	59	3.6	57	72	19	162	34	3	25	35	1.73
36373549--36373625	18	4.2	19	80	11	90	42	2	0	54	1.14
36373560--36373631	37	1.9	37	88	5	110	44	4	0	51	1.20
36374416--36374465	17	2.8	17	84	6	55	64	4	0	32	1.12
36387509--36387594	43	2.0	43	97	0	163	31	6	26	34	1.83
36391913--36391941	13	2.1	14	93	6	51	27	0	0	72	0.85
36400893--36401005	60	1.9	60	94	3	203	53	17	11	17	1.73
36405452--36405506	16	3.4	16	78	9	67	14	25	0	60	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36406539--36406570	3	10.7	3	100	0	64	68	0	0	31	0.90
36411324--36411348	1	25.0	1	100	0	50	0	0	0	100	0.00
36421205--36421240	18	2.0	18	88	0	54	44	0	5	50	1.25
36424685--36424738	20	2.8	19	80	8	56	29	1	7	61	1.34
36424711--36424802	20	4.4	19	75	16	67	41	0	2	56	1.11
36424744--36424801	19	3.1	19	87	5	73	41	0	1	56	1.09
36426614--36426655	21	2.0	21	85	0	57	52	11	9	26	1.68
36428172--36428232	32	1.9	32	100	0	122	45	3	3	47	1.35
36432122--36432164	23	1.9	22	85	4	59	18	0	9	72	1.11
36432844--36432885	20	2.2	19	95	4	75	54	9	0	35	1.33
36433874--36433957	43	2.0	43	81	9	100	28	11	10	48	1.73
36434526--36434614	45	2.0	45	93	0	151	34	25	17	21	1.96
36438167--36438209	20	2.2	20	95	0	77	39	16	11	32	1.84
36439105--36439161	4	14.2	4	78	7	53	1	29	1	66	1.12
36439105--36439144	17	2.5	15	88	8	53	2	32	2	62	1.22
36442583--36442629	23	2.0	23	95	0	85	31	19	21	27	1.97
36446720--36446763	13	3.4	13	87	0	61	79	4	11	4	1.02
36446822--36446933	54	2.1	53	81	5	127	59	10	18	10	1.59
36448690--36449412	49	14.8	49	72	9	535	38	17	24	18	1.93
36448702--36449484	98	8.1	98	87	1	1003	38	17	24	18	1.92
36452192--36452217	2	13.0	2	100	0	52	50	0	0	50	1.00
36454479--36454526	15	3.1	16	85	5	55	14	8	0	77	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36454486--36454535	16	3.2	15	82	5	64	10	10	2	78	1.06
36454485--36454535	15	3.4	14	79	15	57	11	9	1	76	1.10
36459872--36459948	29	2.6	28	80	8	91	37	5	2	54	1.37
36460129--36460188	31	2.0	31	83	9	79	45	3	18	33	1.66
36462852--36462893	17	2.4	18	80	4	50	69	14	14	2	1.30
36463595--36463648	24	2.2	25	93	3	92	44	11	12	31	1.78
36464077--36464143	6	11.3	6	75	9	66	38	2	1	56	1.24
36464068--36464143	17	4.3	18	88	8	111	39	2	1	56	1.21
36464068--36464143	36	2.1	35	92	2	125	39	2	1	56	1.21
36469486--36469577	31	3.0	31	82	6	114	42	13	6	38	1.70
36471288--36471363	18	4.4	17	81	5	80	43	3	1	51	1.28
36471278--36471355	41	1.9	41	86	5	113	44	5	0	50	1.24
36471285--36471379	23	4.1	23	76	11	88	46	3	1	49	1.24
36471283--36471355	6	12.5	6	76	11	71	46	4	0	49	1.21
36472162--36472195	3	11.0	3	87	6	50	64	0	2	32	1.08
36472489--36472531	22	2.0	22	90	0	68	62	0	11	25	1.29
36473289--36473556	29	9.1	30	75	9	187	33	23	4	37	1.76
36473308--36473536	59	3.9	59	78	5	232	34	23	5	36	1.78
36475166--36475230	13	4.9	13	90	1	94	41	23	20	15	1.89
36475224--36475272	21	2.3	21	89	0	71	28	30	24	16	1.96
36475158--36475237	7	11.9	7	73	7	76	38	23	22	15	1.92
36475309--36475338	15	2.0	15	93	0	51	20	3	33	43	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36475322--36475389	21	3.2	21	91	2	109	22	1	32	44	1.62
36475760--36475834	11	6.5	11	71	14	53	68	0	25	6	1.14
36482655--36482791	58	2.3	58	86	4	195	35	3	28	32	1.75
36482655--36482794	59	2.4	59	87	3	203	35	3	29	32	1.75
36482795--36482987	30	6.4	30	93	0	314	36	3	24	35	1.73
36482773--36483000	90	2.5	87	87	6	316	35	3	25	35	1.72
36483075--36483420	161	2.1	162	84	5	443	44	13	16	25	1.84
36483142--36483504	161	2.3	161	78	9	368	47	13	16	22	1.82
36485039--36485115	6	13.2	6	76	15	81	55	1	1	41	1.16
36485042--36485115	17	4.6	16	83	11	98	56	1	1	40	1.16
36485079--36485134	28	2.0	27	86	3	76	55	5	0	39	1.23
36485793--36485831	20	2.0	20	100	0	78	33	25	25	15	1.95
36485789--36485831	7	6.3	7	89	5	70	34	25	25	13	1.93
36485906--36485973	21	3.2	21	91	2	109	22	1	32	44	1.62
36486343--36486417	11	6.5	11	73	14	62	69	0	25	5	1.09
36486343--36486415	23	3.1	23	75	11	67	69	0	24	5	1.09
36488929--36489005	29	2.7	28	76	9	84	36	7	2	53	1.44
36489186--36489245	31	2.0	31	83	9	79	46	5	16	31	1.69
36491687--36491732	7	6.0	7	81	18	56	41	0	0	58	0.98
36491687--36491732	15	3.0	14	87	12	56	41	0	0	58	0.98
36495454--36495517	30	2.2	30	88	2	94	37	10	7	43	1.69
36498293--36498403	31	3.7	30	80	6	100	41	12	10	35	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36498340--36498407	29	2.4	27	81	13	82	39	13	8	38	1.75
36504267--36504346	39	2.0	40	92	2	135	31	22	17	28	1.97
36504271--36504363	39	2.4	38	83	7	107	31	23	17	27	1.97
36507866--36508088	30	7.5	29	76	12	168	38	3	21	36	1.71
36507866--36508088	61	3.7	58	78	8	218	38	3	21	36	1.71
36509315--36509410	6	16.8	6	69	14	60	56	3	3	37	1.31
36509315--36509411	17	5.7	17	85	0	131	56	3	3	37	1.31
36510211--36510404	72	2.7	71	83	3	226	35	21	10	32	1.88
36517714--36517761	23	2.1	23	88	0	69	43	4	0	52	1.20
36518254--36518341	38	2.2	40	86	4	117	53	4	2	39	1.34
36528487--36528565	39	2.0	39	90	4	124	31	21	17	29	1.96
36528491--36528582	39	2.4	38	82	8	98	31	22	17	28	1.97
36532078--36532300	30	7.5	29	76	12	168	38	3	21	36	1.71
36532078--36532300	61	3.7	58	78	8	218	38	3	21	36	1.71
36533520--36533615	6	16.8	6	69	14	60	56	3	3	37	1.31
36533520--36533616	17	5.7	17	85	0	131	56	3	3	37	1.31
36534414--36534607	72	2.7	71	83	3	226	35	21	10	32	1.88
36541896--36541943	23	2.1	23	88	0	69	43	4	0	52	1.20
36547796--36548214	59	7.4	57	83	8	498	37	5	25	31	1.78
36547862--36548074	30	7.3	29	62	11	76	37	6	24	31	1.80
36548180--36548418	29	8.2	28	81	7	198	35	2	23	38	1.67
36548180--36548417	59	4.1	56	83	9	223	35	2	23	39	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36548187--36548417	88	2.6	87	82	9	290	35	2	24	38	1.68
36553367--36553640	29	9.3	30	66	11	131	34	5	28	31	1.81
36553308--36553738	59	7.4	59	88	1	609	36	5	26	31	1.79
36553308--36553738	117	3.7	118	89	1	654	36	5	26	31	1.79
36553308--36553738	176	2.4	176	91	1	697	36	5	26	31	1.79
36553315--36553650	29	11.4	29	65	22	123	36	5	26	32	1.79
36553310--36553797	235	2.1	234	86	5	664	36	4	26	32	1.78
36553720--36553947	30	7.6	30	91	1	352	35	2	24	38	1.68
36555704--36555741	12	2.9	14	84	11	53	15	18	28	36	1.92
36555819--36555926	6	18.0	6	75	14	89	47	1	0	50	1.18

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143